mRNA_E-siliculosus-1a_F_contig11849.1185.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11849.1185.1
Unique NamemRNA_E-siliculosus-1a_F_contig11849.1185.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11849.1185.1 vs. uniprot
Match: A0A392RNR9_9FABA (LRR receptor-like serine/threonine-protein kinase GSO1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392RNR9_9FABA)

HSP 1 Score: 48.5 bits (114), Expect = 2.990e-5
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 GPIPEELGKLTAVTELYLSRNKLSGKISKFVGSEEHESPRGVHSLFYSPRPLAGHIPPELGALSELQYL 207
            GPIP E+GKL+ + EL LSRN  +G++   +G  ++   + +  L Y+   L+G IPP LG +S+L+ L
Sbjct:    1 GPIPPEVGKLSKLYELQLSRNSFNGEMPIEIGKLQNL--QTILDLSYN--NLSGGIPPSLGTMSKLETL 65
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BLAST of mRNA_E-siliculosus-1a_F_contig11849.1185.1 vs. uniprot
Match: A0A6I9UK16_SESIN (LRR receptor-like serine/threonine-protein kinase FLS2 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9UK16_SESIN)

HSP 1 Score: 49.7 bits (117), Expect = 4.770e-5
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    1 GPIPEELGKLTAVTELYLSRNKLSGKISK-FVGSEEHESPRGVHSLFYSPRPLAGHIPPELGALSELQ 201
            G +PE LGKL  + E+YLSRN+ SG I + F G       R +  L+      +G IP  LG LS+LQ
Sbjct:  122 GMLPESLGKLCRLEEIYLSRNRFSGDIQQAFTGCIS----RSLPFLYLGSNKFSGQIPKNLGELSKLQ 185
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11849.1185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A392RNR9_9FABA2.990e-540.58LRR receptor-like serine/threonine-protein kinase ... [more]
A0A6I9UK16_SESIN4.770e-542.65LRR receptor-like serine/threonine-protein kinase ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11849contigE-siliculosus-1a_F_contig11849:787..1329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size240
Model size240
Exons2
Ec32 orthologEc-13_000550.1
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927702.5692768-CDS-E-siliculosus-1a_F_contig11849:786..9181622927702.5692768-CDS-E-siliculosus-1a_F_contig11849:786..918Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11849 787..918 +
1696318645.1672215-CDS-E-siliculosus-1a_F_contig11849:786..9181696318645.1672215-CDS-E-siliculosus-1a_F_contig11849:786..918Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11849 787..918 +
1622927702.5839257-CDS-E-siliculosus-1a_F_contig11849:1221..13291622927702.5839257-CDS-E-siliculosus-1a_F_contig11849:1221..1329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11849 1222..1329 +
1696318645.1796098-CDS-E-siliculosus-1a_F_contig11849:1221..13291696318645.1796098-CDS-E-siliculosus-1a_F_contig11849:1221..1329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11849 1222..1329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11849.1185.1prot_E-siliculosus-1a_F_contig11849.1185.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11849 787..1329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11849.1185.1

>prot_E-siliculosus-1a_F_contig11849.1185.1 ID=prot_E-siliculosus-1a_F_contig11849.1185.1|Name=mRNA_E-siliculosus-1a_F_contig11849.1185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=80bp
GPIPEELGKLTAVTELYLSRNKLSGKISKFVGSEEHESPRGVHSLFYSPR
PLAGHIPPELGALSELQYLWLNSNKLTGTI
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mRNA from alignment at E-siliculosus-1a_F_contig11849:787..1329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11849.1185.1 ID=mRNA_E-siliculosus-1a_F_contig11849.1185.1|Name=mRNA_E-siliculosus-1a_F_contig11849.1185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=543bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11849:787..1329+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGACCGATACCGGAGGAGCTAGGGAAGCTTACTGCGGTGACGGAGCTATA
TCTGAGCAGAAACAAGCTCTCAGGTAAGATTTCGAAGTTCGTTGGAAGCG
AAGAGCATGAATCCCCCAGGGGCGTCCACAGCGTAGACGCCAAGAAACAT
TGACCCGCTTTGAACTTGTACATCTGTCCTGCCCCTGAAATTTCGACGGC
AGGCCGCATCCCACCGGAGCTGGGAAAGCTCGTAGCACTGGAGAAGCTCT
CTCTTGGAGATAATCGACTCTCTGGTGAGGCATCGGTAATTTTTCAGAAT
GTATTCCGCCCACGTAGACGCCAAGAAAGATTGACCCGCCTCTCTATTTT
CAAGAGGACGCCAACTAGTTGGCGTCCACGAGCAGCTGACATGTGTTCTA
GAGAACGGGGAGTTATTTTGTTTTGGCCCGCTCAGCTTTTCTATTCCCCC
CGTCCGCTTGCAGGCCACATCCCACCGGAGCTAGGAGCTCTCAGCGAGCT
GCAATACCTGTGGCTCAACAGCAACAAGCTTACAGGTACAATT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11849:787..1329+

>mRNA_E-siliculosus-1a_F_contig11849.1185.1 ID=mRNA_E-siliculosus-1a_F_contig11849.1185.1|Name=mRNA_E-siliculosus-1a_F_contig11849.1185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11849:787..1329+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGACCGATACCGGAGGAGCTAGGGAAGCTTACTGCGGTGACGGAGCTATA
TCTGAGCAGAAACAAGCTCTCAGGTAAGATTTCGAAGTTCGTTGGAAGCG
AAGAGCATGAATCCCCCAGGGGCGTCCACAGCGGACCGATACCGGAGGAG
CTAGGGAAGCTTACTGCGGTGACGGAGCTATATCTGAGCAGAAACAAGCT
CTCAGGTAAGATTTCGAAGTTCGTTGGAAGCGAAGAGCATGAATCCCCCA
GGGGCGTCCACAGCCTTTTCTATTCCCCCCGTCCGCTTGCAGGCCACATC
CCACCGGAGCTAGGAGCTCTCAGCGAGCTGCAATACCTGTGGCTCAACAG
CAACAAGCTTACAGGTACAATTCTTTTCTATTCCCCCCGTCCGCTTGCAG
GCCACATCCCACCGGAGCTAGGAGCTCTCAGCGAGCTGCAATACCTGTGG
CTCAACAGCAACAAGCTTACAGGTACAATT
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