mRNA_E-siliculosus-1a_F_contig11842.1183.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11842.1183.1
Unique NamemRNA_E-siliculosus-1a_F_contig11842.1183.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11842.1183.1 vs. uniprot
Match: D7FKR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR9_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.480e-36
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:  109 MCKEEPECEGKIPRSTISATYLERHHCSGDVPQRVSGQGIST-STAVLATSSRADRGTEATGNTDDSINQGSREKETAAEART 354
            MCKEEP+ EGKIPRSTISATYLERHHCSGDV +RVSGQGIST STAVLATSSRADRGTE TGNTDDSINQG REKETAAEART
Sbjct:    1 MCKEEPDGEGKIPRSTISATYLERHHCSGDVHRRVSGQGISTTSTAVLATSSRADRGTETTGNTDDSINQGFREKETAAEART 83
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11842.1183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKR9_ECTSI1.480e-3691.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11842contigE-siliculosus-1a_F_contig11842:124..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size354
Model size356
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsKOG0752@1,KOG0752@2759
EggNOG free text desc.mitochondrial transport
KEGG TC2.A.29.12.2
KEGG koko:K15085
Seed eggNOG ortholog2880.D7FKR9
Seed ortholog evalue8.1e-31
Seed ortholog score139.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927702.4773676-CDS-E-siliculosus-1a_F_contig11842:123..4771622927702.4773676-CDS-E-siliculosus-1a_F_contig11842:123..477Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11842 124..477 +
1696318645.1111548-CDS-E-siliculosus-1a_F_contig11842:123..4771696318645.1111548-CDS-E-siliculosus-1a_F_contig11842:123..477Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11842 124..477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11842.1183.1prot_E-siliculosus-1a_F_contig11842.1183.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11842 124..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11842.1183.1

>prot_E-siliculosus-1a_F_contig11842.1183.1 ID=prot_E-siliculosus-1a_F_contig11842.1183.1|Name=mRNA_E-siliculosus-1a_F_contig11842.1183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
AHFWTSAACYLLPQELLCTCATTAVADIPRLDLKAAMCKEEPECEGKIPR
STISATYLERHHCSGDVPQRVSGQGISTSTAVLATSSRADRGTEATGNTD
DSINQGSREKETAAEART
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mRNA from alignment at E-siliculosus-1a_F_contig11842:124..477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11842.1183.1 ID=mRNA_E-siliculosus-1a_F_contig11842.1183.1|Name=mRNA_E-siliculosus-1a_F_contig11842.1183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11842:124..477+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCACTTTTGGACTTCCGCTGCGTGCTACCTTCTTCCCCAGGAGCTGCT
GTGTACTTGTGCCACCACTGCTGTTGCAGACATTCCGAGGCTAGATTTGA
AGGCTGCTATGTGCAAGGAGGAACCTGAATGCGAAGGGAAGATACCGCGG
TCGACGATCAGTGCAACGTACTTGGAGAGACATCACTGCAGCGGAGATGT
GCCCCAGCGGGTTTCTGGGCAAGGGATCTCAACTAGCACTGCTGTGTTGG
CAACTAGCAGCAGGGCTGACCGAGGGACTGAGGCTACTGGAAATACCGAT
GATAGCATCAACCAGGGATCTAGGGAGAAGGAGACGGCAGCCGAAGCAAG
AACT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11842:124..477+

>mRNA_E-siliculosus-1a_F_contig11842.1183.1 ID=mRNA_E-siliculosus-1a_F_contig11842.1183.1|Name=mRNA_E-siliculosus-1a_F_contig11842.1183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11842:124..477+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCACTTTTGGACTTCCGCTGCGTGCTACCTTCTTCCCCAGGAGCTGCT
GTGTACTTGTGCCACCACTGCTGTTGCAGACATTCCGAGGCTAGATTTGA
AGGCTGCTATGTGCAAGGAGGAACCTGAATGCGAAGGGAAGATACCGCGG
TCGACGATCAGTGCAACGTACTTGGAGAGACATCACTGCAGCGGAGATGT
GCCCCAGCGGGTTTCTGGGCAAGGGATCTCAACTAGCACTGCTGTGTTGG
CAACTAGCAGCAGGGCTGACCGAGGGACTGAGGCTACTGGAAATACCGAT
GATAGCATCAACCAGGGATCTAGGGAGAAGGAGACGGCAGCCGAAGCAAG
AACTGCTCACTTTTGGACTTCCGCTGCGTGCTACCTTCTTCCCCAGGAGC
TGCTGTGTACTTGTGCCACCACTGCTGTTGCAGACATTCCGAGGCTAGAT
TTGAAGGCTGCTATGTGCAAGGAGGAACCTGAATGCGAAGGGAAGATACC
GCGGTCGACGATCAGTGCAACGTACTTGGAGAGACATCACTGCAGCGGAG
ATGTGCCCCAGCGGGTTTCTGGGCAAGGGATCTCAACTAGCACTGCTGTG
TTGGCAACTAGCAGCAGGGCTGACCGAGGGACTGAGGCTACTGGAAATAC
CGATGATAGCATCAACCAGGGATCTAGGGAGAAGGAGACGGCAGCCGAAG
CAAGAACT
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