mRNA_E-siliculosus-1a_F_contig1184.1182.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1184.1182.1 vs. uniprot
Match: UPI001899E24F (M64 family metallo-endopeptidase n=4 Tax=Odoribacter splanchnicus TaxID=28118 RepID=UPI001899E24F) HSP 1 Score: 67.8 bits (164), Expect = 1.100e-7 Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 2
Query: 989 EWEAGKEKLAMDNFFVSMGGENWEHSMKWTDGDADLRERFGLTLENGHITKISLAGNNLEGVLNDDIADLEHLRELVLHGN-KIYGAVPPRLQSL 1270
E E KE+ A+ F+ + G+ W+++ W D + E +GLT+ENG++T+++LA NNL G L + I +L+HL ++ L N + G +P L SL
Sbjct: 396 EEEIAKEREALIAFYHATNGDQWKNNTNWCS-DKPVSEWYGLTIENGYVTQLNLAENNLSGYLPECIGELQHLTDISLWENYNLGGKLPAGLFSL 489
BLAST of mRNA_E-siliculosus-1a_F_contig1184.1182.1 vs. uniprot
Match: UPI001F323F9C (PKD domain-containing protein n=1 Tax=Fulvivirga sp. SS9-22 TaxID=2904245 RepID=UPI001F323F9C) HSP 1 Score: 62.4 bits (150), Expect = 5.670e-6 Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 2
Query: 1007 EKLAMDNFFVSMGGENWEHSMKWTDGDA--DLRERFGLTLENGHITKISLAGNNLEGVLND--DIADLEHLRELVLHGNKIYGAVP 1252
E A+ + + + GG NW ++ W G D +G+T+ENG +TKI L GNNL G L+ A+L L+ L L+ N++ GAVP
Sbjct: 312 EYQALVDLYNATGGANWANNTNWLQGTTCTDFANWYGVTVENGDVTKIELHGNNLIGELSSISSFANLSKLQILKLYNNELGGAVP 397
BLAST of mRNA_E-siliculosus-1a_F_contig1184.1182.1 vs. uniprot
Match: UPI00143131AF (T9SS type A sorting domain-containing protein n=1 Tax=Maribellus sediminis TaxID=2696285 RepID=UPI00143131AF) HSP 1 Score: 58.5 bits (140), Expect = 7.650e-5 Identity = 30/90 (33.33%), Postives = 55/90 (61.11%), Query Frame = 2
Query: 1007 EKLAMDNFFVSMGGENWEHSMKWTDG-DADLRERFGLTLENGHITKISLAGNNLEGVLNDDIADLEHLRELVLHGNKIYGAVPPRLQSLI 1273
E A+++ + S G +W+++ W D + + + +G+T+ENGH+T++ L+GNNL+ + ++ L +L+ L L N I GA L SL+
Sbjct: 53 EYKALEDLYYSTVGSSWKNNSNWLDTINNSIDDWYGVTVENGHVTRLELSGNNLQEYIFENEVQLPYLQILDLSNNLIDGANFNSLDSLM 142 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1184.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1184.1182.1 >prot_E-siliculosus-1a_F_contig1184.1182.1 ID=prot_E-siliculosus-1a_F_contig1184.1182.1|Name=mRNA_E-siliculosus-1a_F_contig1184.1182.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=545bp MAEMVAIKATSWLTAMAVEHLSGYFAESVEEGIGRWSNKLQNIIASPEMKback to top mRNA from alignment at E-siliculosus-1a_F_contig1184:20287..32193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1184.1182.1 ID=mRNA_E-siliculosus-1a_F_contig1184.1182.1|Name=mRNA_E-siliculosus-1a_F_contig1184.1182.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11907bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1184:20287..32193- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1184:20287..32193- >mRNA_E-siliculosus-1a_F_contig1184.1182.1 ID=mRNA_E-siliculosus-1a_F_contig1184.1182.1|Name=mRNA_E-siliculosus-1a_F_contig1184.1182.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3270bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1184:20287..32193- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |