mRNA_E-siliculosus-1a_F_contig1183.1177.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1183.1177.1
Unique NamemRNA_E-siliculosus-1a_F_contig1183.1177.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: D7FXU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU8_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 1.390e-111
Identity = 169/190 (88.95%), Postives = 179/190 (94.21%), Query Frame = 3 
Query:  927 MVYATSIDGSVVHATATGTPPGDLEDQTIDPVSLTRRSLLQANPRCMSKVEELRAEVMEERDGAEKAAIEGRSLKKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV 1496
            MVYATSIDGSVVHATATGTPPGDLED+TIDPVSLTRR+LL+A PRCMSKVE LRAE+MEER+ AEK A+EGR L KSKMVTVLGFLPFGKHGFRRRRAREHAAAH+GE TLSVTN G+LEVSVDG +VLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGG+Y WGIQAREPLAQVVPTTICF DKYPDV
Sbjct:    1 MVYATSIDGSVVHATATGTPPGDLEDRTIDPVSLTRRTLLEAIPRCMSKVEGLRAEIMEEREEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHAAAHLGEATLSVTNTGDLEVSVDGFLVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGEYAWGIQAREPLAQVVPTTICFSDKYPDV 190
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 9.010e-103
Identity = 163/193 (84.46%), Postives = 178/193 (92.23%), Query Frame = 3 
Query:  918 KTAMVYATSIDGSVVHATATGTPPGDLEDQTIDPVSLTRRSLLQANPRCMSKVEELRAEVMEERDGAEKAAIEGRSLKKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV 1496
            +TAMVYATSIDGSVVHATATGTPPGDLED++IDPVS TRR+LL+ANP+ MS VE LRAE++ E + AEKAA+EG+ LK+SKMVTVLGFLPFGKHGFRRRRARE AAAH+GE  LSVTNKG+LEVSVDGSIVLRKSGPSWFGFR+KDSTYEVRVTEDGV VSRGGKYDWGIQAREPLAQVVP T CFCD YPDV
Sbjct:  310 ETAMVYATSIDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRKSGPSWFGFRKKDSTYEVRVTEDGVVVSRGGKYDWGIQAREPLAQVVPATTCFCDMYPDV 502
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: A0A6H5K6E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E6_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 3.300e-82
Identity = 146/198 (73.74%), Postives = 155/198 (78.28%), Query Frame = 3 
Query:  903 LPNPAKTAMVYATSIDGSVVHATATGTPPGDLEDQTIDPVSLTRRSLLQANPRCMSKVEELRAEVMEERDGAEKAAIEGRSLKKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV 1496
            LPN AKTAMVYATSIDGSVVHATATG P GDLED+TI+ VS T              VE                AIEGR LKKS MVTVLGFLPFGKHGFRRR AR+HAAAH+GE TLSVTN+G+LEVSVDG IVLRK GPSWFGFRQK STYEVRVT+DGVAVS+GGKYD GIQAREPLAQVVPTTICFCDKYPD+
Sbjct:  219 LPNAAKTAMVYATSIDGSVVHATATGRPSGDLEDRTIETVSPTH-------------VE----------------AIEGRILKKSNMVTVLGFLPFGKHGFRRRPARKHAAAHIGEATLSVTNEGDLEVSVDGFIVLRKPGPSWFGFRQKYSTYEVRVTKDGVAVSQGGKYDLGIQAREPLAQVVPTTICFCDKYPDL 387
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: A0A6H5JQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ9_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 2.410e-80
Identity = 139/179 (77.65%), Postives = 153/179 (85.47%), Query Frame = 3 
Query:  903 LPNPAKTAMVYATSIDGSVVHATATGTPPGDLEDQTIDPVSLTRRSLLQANPRCMSKVEELRAEVMEERDGAEKAAIEGRSLKKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQARE 1439
            LPN AKTAMVYATSID  VV ATATGTPPGDLED+T+DP S TRR+LL+AN + MS VE L+AE+M E   AEK  +EGR LKKSKMV VLGFLPFGKHGFRRRR REHAAAH+GE TLSVTNKG+LEVSVDGSIVL KSGPSWFGFR+KD TYEVRVTE  V VS+GG +DWGIQAR+
Sbjct:  132 LPNLAKTAMVYATSIDCFVVRATATGTPPGDLEDRTVDPASQTRRTLLEANTQRMSIVEGLQAEIMAETAEAEKETVEGRGLKKSKMVAVLGFLPFGKHGFRRRRPREHAAAHLGEATLSVTNKGDLEVSVDGSIVLGKSGPSWFGFRKKDFTYEVRVTEGVVMVSQGG-HDWGIQARK 309
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 7.540e-76
Identity = 120/133 (90.23%), Postives = 125/133 (93.98%), Query Frame = 3 
Query: 1098 MEERDGAEKAAIEGRSLKKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDKYPDV 1496
            M+ERD AEK A+EGR L KSKMVTVLGFLPFGKHGFRRRRAREH AAH+GE TLSVTNKG+LEVSVDGSIVLRKS PSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICF DKYP+V
Sbjct:    1 MDERDEAEKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRKSRPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFFDKYPNV 133
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: A0A6H5LDV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDV1_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 2.670e-59
Identity = 105/180 (58.33%), Postives = 132/180 (73.33%), Query Frame = 3 
Query:  909 NPAKTAMVYATSIDGSVVHATATGTPPGDLEDQTIDPVSLTRRSLLQANPRCMSKVEELRAEVMEERDGAEKAAIEGRSL-KKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPL 1445
            NPAKT+M+YA+ IDGSV+HATA G  P D +D     V   +  LL+AN R M     LR+E+ E      KAA+EGR L K+ K+ T++GFLPFGK+GFR RRAREHA AHMGE TLS+T KG LEV+VDG  VLRKSGPSWFGFR+ DS+YE+R TE+G+ +SR GK+DW ++A + L
Sbjct:    6 NPAKTSMLYASPIDGSVIHATANGKAPHDKDDDMTGQVPHGKHVLLKANSRKMLNALGLRSEIFEANLEKRKAALEGRELPKEGKVDTLMGFLPFGKNGFRGRRAREHAEAHMGEATLSLTKKGNLEVAVDGMTVLRKSGPSWFGFRKSDSSYELRATEEGIVISRQGKFDWSVKAGDIL 185
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: A0A6H5L4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D4_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 2.360e-56
Identity = 103/178 (57.87%), Postives = 132/178 (74.16%), Query Frame = 3 
Query:  909 NPAKTAMVYATSIDGSVVHATATGTPPGDLEDQTIDPVSLTRRSLLQANPRCMSKVEELRAEVMEERDGAEKAAIEGRSLKKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREP 1442
            NPA+T+M YA+  DGSV+ ATA G  P D +  T  PV+   R+LL ANPR MSKV  LR+E +      ++ A EGR+L++ K+ T++GF+PFGKHGF RRRAREH  A+MGE TLS+TNKG L VSVDG +VLRKSGP  FGFR+ D +YE+RVTE GV +SR G YDWG++A++P
Sbjct:  243 NPARTSMAYASPTDGSVILATAIGNAPRDADGNTTGPVTQNNRTLLTANPRKMSKVRALRSENIVAGLEKKRVAREGRTLREGKLATLMGFMPFGKHGFLRRRAREHVEAYMGEATLSITNKGGLGVSVDGIVVLRKSGPYCFGFRRTDRSYELRVTEAGVVISRRGMYDWGLKAQDP 420
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: D7G0T1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T1_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 8.930e-56
Identity = 107/160 (66.88%), Postives = 124/160 (77.50%), Query Frame = 1 
Query:  220 MGLTLIVHPGGHLTVRAPTVSMSRTEASALEREEAMRDHPVLLVLGSIDFKVTTWLQQPLDGTV---------------LDERGVVWVGDQGLVLSGNNEVAYTAKAVVVSAA-KHVADPTVSFKEPSFHKSDPSPSSTAADPNDGDGDKNVPAHDAVST 651
            M LTLI+HPG HLTVRAPTVS++ TE      E AMRDHPVLLVLGSIDF+VT+WL+ PLDGTV               LDE  +VWVGDQ  V+S ++ +A+TA++VVVS+A KHVADP VSFKEPSFHKSDP+P+STAADPN GDGDKNVPAHDAV T
Sbjct:    1 MALTLIMHPGAHLTVRAPTVSVAWTE------ERAMRDHPVLLVLGSIDFQVTSWLEHPLDGTVVTSTYSESHASTKFSLDEHNIVWVGDQASVVS-DHSIAFTARSVVVSSADKHVADPAVSFKEPSFHKSDPAPTSTAADPNAGDGDKNVPAHDAVPT 153
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: A0A6H5LGE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE1_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.520e-53
Identity = 110/194 (56.70%), Postives = 114/194 (58.76%), Query Frame = 3 
Query:  903 LPNPAKTAMVYATSIDGSVVHATATGTPPGDLEDQTIDPVSLTRRSLLQANPRCMSKVEELRAEVMEERDGAEKAAIEGRSLKKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREPLAQVVPTTICFCDK 1484
            LPNPAKTAMVYATSIDGSVVH TATG P GDLED+TI+P SLTRR+LL+ANPRCMSK                                                                      EV VDGSIVLRKSGPSWFGF QKD TYEVRVTEDGVAVSRGGKYDWGIQAR PLAQV PTTICF DK
Sbjct:  197 LPNPAKTAMVYATSIDGSVVHVTATGRPSGDLEDRTIEPASLTRRTLLEANPRCMSK----------------------------------------------------------------------EVLVDGSIVLRKSGPSWFGFLQKDFTYEVRVTEDGVAVSRGGKYDWGIQARGPLAQVFPTTICFRDK 320
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.810e-52
Identity = 96/152 (63.16%), Postives = 119/152 (78.29%), Query Frame = 3 
Query:  987 PGDLEDQTIDPVSLTRRSLLQANPRCMSKVEELRAEVMEERDGAEKAAIEGRSLKKSKMVTVLGFLPFGKHGFRRRRAREHAAAHMGETTLSVTNKGELEVSVDGSIVLRKSGPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQAREP 1442
            P D +  T  PV    R+LL ANPR MSKV  LR+E +  R   ++AA+EGR+L++ K+ T++GFLPFGKHGF RRRAREHA AHMGE TLS+T KG LEVSVDG +VLRKSGPSWFGFR+ D +YE+RVTE+GV +SR G YDWGI+A++P
Sbjct:  339 PRDADGNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRKSGPSWFGFRRTDRSYELRVTEEGVVISRRGMYDWGIKAQDP 490
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1183.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FXU8_ECTSI1.390e-11188.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMM4_ECTSI9.010e-10384.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6E6_9PHAE3.300e-8273.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQZ9_9PHAE2.410e-8077.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T0_ECTSI7.540e-7690.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LDV1_9PHAE2.670e-5958.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4D4_9PHAE2.360e-5657.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T1_ECTSI8.930e-5666.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGE1_9PHAE1.520e-5356.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9B0_ECTSI1.810e-5263.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1183contigE-siliculosus-1a_F_contig1183:29516..34691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size855
Model size1496
Exons9
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927701.7553754-UTR-E-siliculosus-1a_F_contig1183:29515..297281622927701.7553754-UTR-E-siliculosus-1a_F_contig1183:29515..29728Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 29516..29728 -
1696318644.7656806-UTR-E-siliculosus-1a_F_contig1183:29515..297281696318644.7656806-UTR-E-siliculosus-1a_F_contig1183:29515..29728Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 29516..29728 -
1622927701.7682736-UTR-E-siliculosus-1a_F_contig1183:30099..303531622927701.7682736-UTR-E-siliculosus-1a_F_contig1183:30099..30353Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 30100..30353 -
1696318644.775148-UTR-E-siliculosus-1a_F_contig1183:30099..303531696318644.775148-UTR-E-siliculosus-1a_F_contig1183:30099..30353Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 30100..30353 -
1622927701.8876746-UTR-E-siliculosus-1a_F_contig1183:33150..331621622927701.8876746-UTR-E-siliculosus-1a_F_contig1183:33150..33162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 33151..33162 -
1696318644.8454733-UTR-E-siliculosus-1a_F_contig1183:33150..331621696318644.8454733-UTR-E-siliculosus-1a_F_contig1183:33150..33162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 33151..33162 -
1622927701.8997943-UTR-E-siliculosus-1a_F_contig1183:34035..341451622927701.8997943-UTR-E-siliculosus-1a_F_contig1183:34035..34145Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 34036..34145 -
1696318644.8562365-UTR-E-siliculosus-1a_F_contig1183:34035..341451696318644.8562365-UTR-E-siliculosus-1a_F_contig1183:34035..34145Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 34036..34145 -
1622927701.9139962-UTR-E-siliculosus-1a_F_contig1183:34639..346911622927701.9139962-UTR-E-siliculosus-1a_F_contig1183:34639..34691Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 34640..34691 -
1696318644.8672392-UTR-E-siliculosus-1a_F_contig1183:34639..346911696318644.8672392-UTR-E-siliculosus-1a_F_contig1183:34639..34691Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1183 34640..34691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927701.7819827-CDS-E-siliculosus-1a_F_contig1183:30353..304811622927701.7819827-CDS-E-siliculosus-1a_F_contig1183:30353..30481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 30354..30481 -
1696318644.7850816-CDS-E-siliculosus-1a_F_contig1183:30353..304811696318644.7850816-CDS-E-siliculosus-1a_F_contig1183:30353..30481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 30354..30481 -
1622927701.801137-CDS-E-siliculosus-1a_F_contig1183:30550..307941622927701.801137-CDS-E-siliculosus-1a_F_contig1183:30550..30794Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 30551..30794 -
1696318644.7971482-CDS-E-siliculosus-1a_F_contig1183:30550..307941696318644.7971482-CDS-E-siliculosus-1a_F_contig1183:30550..30794Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 30551..30794 -
1622927701.8176277-CDS-E-siliculosus-1a_F_contig1183:30945..310861622927701.8176277-CDS-E-siliculosus-1a_F_contig1183:30945..31086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 30946..31086 -
1696318644.805858-CDS-E-siliculosus-1a_F_contig1183:30945..310861696318644.805858-CDS-E-siliculosus-1a_F_contig1183:30945..31086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 30946..31086 -
1622927701.8364146-CDS-E-siliculosus-1a_F_contig1183:32120..322251622927701.8364146-CDS-E-siliculosus-1a_F_contig1183:32120..32225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 32121..32225 -
1696318644.8140934-CDS-E-siliculosus-1a_F_contig1183:32120..322251696318644.8140934-CDS-E-siliculosus-1a_F_contig1183:32120..32225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 32121..32225 -
1622927701.8612108-CDS-E-siliculosus-1a_F_contig1183:32550..326401622927701.8612108-CDS-E-siliculosus-1a_F_contig1183:32550..32640Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 32551..32640 -
1696318644.8222008-CDS-E-siliculosus-1a_F_contig1183:32550..326401696318644.8222008-CDS-E-siliculosus-1a_F_contig1183:32550..32640Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 32551..32640 -
1622927701.8746634-CDS-E-siliculosus-1a_F_contig1183:33003..331501622927701.8746634-CDS-E-siliculosus-1a_F_contig1183:33003..33150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 33004..33150 -
1696318644.8307097-CDS-E-siliculosus-1a_F_contig1183:33003..331501696318644.8307097-CDS-E-siliculosus-1a_F_contig1183:33003..33150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1183 33004..33150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1183.1177.1prot_E-siliculosus-1a_F_contig1183.1177.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1183 30354..33150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1183.1177.1

>prot_E-siliculosus-1a_F_contig1183.1177.1 ID=prot_E-siliculosus-1a_F_contig1183.1177.1|Name=mRNA_E-siliculosus-1a_F_contig1183.1177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=285bp
MSGDTEIRSPTPITTMGLTLIVHPGGHLTVRAPTVSMSRTEASALEREEA
MRDHPVLLVLGSIDFKVTTWLQQPLDGTVLDERGVVWVGDQGLVLSGNNE
VAYTAKAVVVSAAKHVADPTVSFKEPSFHKSDPSPSSTAADPNDGDGDKN
VPAHDAVSTSTTTATLTPAATAAATPTATPTATTAAATTETAPATTATAT
TAAAAATATATATATATTAAATTATATATATAAATATTRKDLHSRTPPRR
PWCTPRQSTAPSCTPRPPERRRGTSRTRPLTRCR*
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mRNA from alignment at E-siliculosus-1a_F_contig1183:29516..34691-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1183.1177.1 ID=mRNA_E-siliculosus-1a_F_contig1183.1177.1|Name=mRNA_E-siliculosus-1a_F_contig1183.1177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5176bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1183:29516..34691- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCACGTCGCCACCAGCAGCTGGTAGCAAACCTGATGTGAGATCGCCTAC
AAGTACGTGTGAGAAAAAATTCAGCGCAACAACAATCTGGGTTGGTTATA
ATATATAATAATATTATTAGACTATTTGTTGGGAGTCCGCAGCGGTTAAA
AGGGAGGAGACCACACCGCCGTGTCTCTCCGAACCAGGAACGTCAGGACC
AGGATTAACCCGTCAAATGGTTTTCATCCGTCGAGAGCAGACGTGATCGG
ACGCGGATTTCTAGCTCTTTCCTCTAGCCCTGCTCGCTACGGGCACTGTC
GATCAACATCTATCTGCATCATATCTCCTCCACCCGCCCGAACCACACAA
CATCTGCCCCACCCAGACAAGAGCACAGCTACCTGCGCTCTTGAGTGAGA
CTGATCTTGCCGAAGAACAGAACAACGCGCGACAAGCGAACGGTCCTGCA
CATACGCAAGAAGAATGTATCTCTCGAAGGTGCTGCTCGGTGGCTTGCTT
GCCTTGCTCGCCCTTTGCGCGATGCCGTTCGTCCAAGCTAGGACAGACGA
TACGACCGTCATCCGCAACTGCGATGACATCCCCTCCAAGGCTACCGTGC
ACGCCGGCGGGGCTCTGACGTTCCTCGGGGACATTGACTGCGGCAAGACG
TCGAAGGTGAGATCTTTTGAATCCCGGCCAGATCAACTCTTCTCTCAGCA
GCTATTGCTTGTAGTGTAGGAGATGCGGGGGCGTAGAGACAGAAAATAAG
CAAGCGTGTGTTTGCAGGCTGCTGTAGCAGTTTAGACTCGTTACTGTTGA
ACTGGAAACAAACGGGTATCGCTACACAGGCTGCCGATCGATGCCTACCA
GCCAGATGGCTATAGCTCCGTTGCAAAAAGCCCGCAAGCCAAGATCCCGC
ATGCTACCCAAGTGCTACCCAAGTACAGGCAGGATCGATCGTGTTTCTTT
TTTTTTTAAGCTCATCCCGGTCGCTGCTGCTGTAGCTTCGCTTCGAAAAA
CTGAGACCACACTGACTGATTGATGCTGTGTAGTCCGAGAGCTCGCTTCA
GCCAACTTTCTCATATGATCCGCGCAGACAGCTCGTCCGCGTGTATAGTC
TAACCATGATGGATTTATCCCTATCCTCAAGTGGCGTGAGGTGTGTGTGT
GTGTGTGTGTGAGCACCTTGCATGCAGCCGAGGGTTTGGCGCCACCCTGA
TCGCTCTCCAGCATTGATAGTTGGTCGCCTCTTTATCCACCTCCTTTTCT
CGTGAACAACGCGCTTTTCTTTGCCTGCTGTATGAATACGTGTAGGGTTA
TTTTTTTCTGGCAAGAAATGACAGAATCCCCTCGGGATTGCTTCAATCAC
GCGAATATCCGGGGTTCGCCATGGGCAAGATGAACACGATGGGCATGGGA
AAATCGAACCTGTGATGCTACCATACATCAATGGTGCAGTAGAAAAATAA
ATATTGCTTTTGTCTCCAGAATGCCTCAAAACCTCAATGTTTCCCGTCAA
TTTTTGTCGTCATCGATTTACGTACACAGACGATCGAGTTCATGAGCGGG
GACACGGAAATCCGCTCGCCCACCCCCATCACCACGATGGGGCTCACGCT
GATCGTGCACCCAGGGGGCCACCTGACGGTCCGAGCCCCAACGGTATCCA
TGTCAAGGACTGAGGCAAGTGCACTTGAGCGTGAAGAAGTCCACTGTTGG
TTGCAATGGTACGGGAAGATTCAGATACATACCCGTGCCATCGGATTGAT
GCTACAGCAGGAGTAGATAGATTTGAGTCTACCGGTTTTTCCGTATGATC
ATGGCTTCTTAAATTTCGCTCTAAATAACCGGTCCTTGTTGGTGTATGAA
CATGTTTTAGGAGTGGGCGTGAAAATCTCCCTCTTTTTTTTTTTGTGCAT
CGACCTACAGTACCGACCGAAAGATCAATGAAAACACGTCAGTAGTCTCA
GTTCGGCTGTCTCCCCCCTCTCCTCTCAGCAGTTACTGGAATACGAAACA
ATAATCGCCCGCGCCCCGTTTGCTCAAACAAATACGAACCTCCTTCGACA
GGCTATGCGGGACCACCCCGTGCTATTGGTGCTGGGCTCGATCGACTTTA
AGGTCACGACCTGGCTTCAGCAGCCGCTCGATGGCACTGTGGTGAGCGCA
CAGGGCGAATCGTACGCCTCGACCAAGTTTTCGGCGTCATGTATTCCGTT
CCTCCCTCCGCGTAAGATTATGTTCTTTAATGTTGAGTAGGCATGAAGAC
TGGGATTAAACCCCATGTAGCCCGCTGGGCCGGATGGAATTGGCCCCGTG
AGGTTGTGCTAATATAATGCGAAAGGAACTGGACGTTTTGTCATCGAGAC
ACACAACGTTTTATTCGGCTTCGGTTCTCTTACACGACAAACATCAACAA
TGCTAGTGTCACTGACGTCTGCTGCTGCTGCTGCTGCTGCTTCGGTGTTC
TCACATACATGCACAGCTGGACGAGCGCGGTGTTGTGTGGGTTGGTGATC
AGGGCCTCGTCTTGTCGGGCAACAACGAGGTTGCCTACACTGCGAAGGCC
GTCGTTGTGTCTGCTGCGAAGGTACATTGCACATAATTTTCCTAAGTTTT
CTAATGGTGAGACGCACATGTCGGGTTTGTTTCGGGAGTGTAGCCAATGT
GGCTCGCTGGGCCGACTGGAATTGGCGCCGTGAGGTTTGTCTATTTTTAT
TGAGAAGTGCGCTGGACGGTTAGACTACATGGTTATTGAGACACACAACG
TGTTAGAAAAATCCGCTTGGGTTCCTTTACGTGACGAACATCAACGACAA
TGTCGCCGACGCCTGCTGATGCTGATGCTGATGCTGATGCTGCAGTGGGT
GTGGTGTTCTCACATGCAGAGATGGACAAACGCGGTGCCGGGTGGTTTGA
AACCCAAGGCTCAGTCATTTCGGGCAACAACAAGATCGCATACATGGCCA
AGCCCGTTGTTGTGTCAGCTGATAAGATACATGCACAAATATGCATGTAT
CTTATCAGCTGACACAACAACGGACTTGGCGGTGTAAGCGACCTCGTTGT
TGCTCGACAGGATTAGGCCCTGGTCTCCGACCCACACGACATCGTGTTAG
TCCATCTGTGCATGTGAGAACCCAAAGCCACAGCAGCTGCAACAGCAGCA
GGAGCTGCAGCAGCAGACGTCAGCGACATGGTGAGACGCACATATCTGTC
GTTGGTGTTTCGGGAGTAGTAGCCCATTTCTCAGGCGCAAGCGCATAGAG
GCAGATCAGGTCTTGGTGTTGCAAGCACGCCGTAGTGCATGAGGACTGTT
TTTCATCTAATTTTCTCTCCTGAAACGATTCAAGCCATTTGAGCGTCGAG
AGGAAGCTCGACTTTCTCATTGGCACTGTAATATTTGTGCACGAACATAC
GTGCTGGCGAATATTGGGTGCGGGATGATAGCGGGTGGTCACGCGGCCTT
GAGTTTCGTGTTCTATTTGAATCCTACCCACGTTTCAACGCCGCTTGTTG
TGGGAATGTTATTGACAATACAGTGCACTGACTGGCCTCCCCATGTCCCC
TCTCTCGCTGCCGCGGTCTCCCGCCCACGTTCCGCGCGCACCCAAACAAC
AACAGCACGTGGCCGACCCCACTGTTTCGTTCAAAGAACCCTCCTTCCAC
AAGTCCGACCCTTCCCCGTCCTCCACTGCTGCCGACCCCAATGATGGTGA
TGGCGACAAGAACGTCCCGGCTCATGATGCCGTCTCCACCTCTACGGTGC
ACAACGGCGGCAAGATCGAGGACAATCACGCGGGAAAGGATGCTTCGCCC
ATTCCCGAATCTATCTCGGGGGCCGCGGCAGAGAACCAAGCGCCGAAGCA
GCAGGAGGATCAACAAGACGAGCCCGGGACCATGAGCGACAGAACAGACG
ACGGCAACATTAACACCAGCAGCAACGGCAGCGGCAACGCCAACGGCAAC
GCCTACGGCTACGACGGCAGCAGCTACAACAGAAACGGCACCAGCCACAA
CAGCAACAGCCACAACAGCAGCAGCAGCAGCAACAGCAACGGCAACGGCA
ACGGCAACGGCAACGACGGCAGCAGCCACAACAGCAACAGCAACAGCAAC
AGCAACAGCAGCGGCAACAGCAACGACAAGAAAGGACCTACGTACTCACC
CGACGCGTTCGAATTTTACCCGGACTTCGTCCTGCGTGTCGGAGACTTCC
TGCACGGGAGACTCCCGAACCCCGCCAAGACGGCCATGGTGTACGCCACG
TCAATCGACGGCTCCGTCGTGCACGCCACGGCCACCGGAACGCCGCCGGG
GGACCTCGAGGACCAGACCATTGACCCGGTGTCGCTGACGAGGCGGAGCC
TGCTACAGGCCAACCCGCGATGCATGTCGAAGGTGGAGGAGCTCCGAGCT
GAGGTAATGGAAGAGAGAGACGGTGCGGAGAAGGCGGCGATCGAGGGCCG
GAGTCTTAAGAAGTCGAAGATGGTCACCGTCTTGGGCTTTCTGCCCTTCG
GAAAGCACGGCTTTCGCCGGCGACGAGCGAGGGAGCACGCGGCTGCGCAC
ATGGGGGAGACAACCCTCTCCGTGACGAACAAGGGAGAGCTGGTACGTTG
GGCGGCGGCAAGACTTGTAGCTGTAGTAGCAGGATGCGAATCGTGCGAGA
TGGTGCTTGCTGGCATTGTTCCTCAGGTCGTATTATGACTAGATGCAAAC
GGGCGGTTTCTCTCGATGCATCCGGCAAACATTTTCCCATCCGCCGGCCC
CTGCCTCGCTGTAACCTGGCGTGTACCCCTTCCCTTCGTCGGTGCGCTCC
CCCTCACTATTGTTTTTTTTCGGTAGAAGTCATACATAGTGGGAGAAGAA
TCGCAGGCACACTGAATCTCCCCACTTGACATCTACAGAAAGCCATGTTC
CCCAACGTCACCCCCCCTCTTTTTCGCGCAACCGCTGCATGCAATGTATG
TGCACCTGCGCAGGAGGTCTCGGTGGACGGATCCATCGTCCTTCGGAAGT
CCGGGCCTTCCTGGTTCGGGTTTCGCCAGAAGGACTCCACGTACGAGGTC
CGTGTCACGGAGGACGGGGTTGCCGTGTCGCGAGGGGGCAAGTACGACTG
GGGCATCCAGGCCCGGGAACCTCTAGCGCAAGTCGTCCCAACCACCATTT
GTTTTTGCGACAAGTACCCAGACGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1183:29516..34691-

>mRNA_E-siliculosus-1a_F_contig1183.1177.1 ID=mRNA_E-siliculosus-1a_F_contig1183.1177.1|Name=mRNA_E-siliculosus-1a_F_contig1183.1177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1183:29516..34691- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGGGGACACGGAAATCCGCTCGCCCACCCCCATCACCACGATGGG
GCTCACGCTGATCGTGCACCCAGGGGGCCACCTGACGGTCCGAGCCCCAA
CGGTATCCATGTCAAGGACTGAGGCAAGTGCACTTGAGCGTGAAGAAATG
AGCGGGGACACGGAAATCCGCTCGCCCACCCCCATCACCACGATGGGGCT
CACGCTGATCGTGCACCCAGGGGGCCACCTGACGGTCCGAGCCCCAACGG
TATCCATGTCAAGGACTGAGGCAAGTGCACTTGAGCGTGAAGAAGCTATG
CGGGACCACCCCGTGCTATTGGTGCTGGGCTCGATCGACTTTAAGGTCAC
GACCTGGCTTCAGCAGCCGCTCGATGGCACTGTGGCTATGCGGGACCACC
CCGTGCTATTGGTGCTGGGCTCGATCGACTTTAAGGTCACGACCTGGCTT
CAGCAGCCGCTCGATGGCACTGTGCTGGACGAGCGCGGTGTTGTGTGGGT
TGGTGATCAGGGCCTCGTCTTGTCGGGCAACAACGAGGTTGCCTACACTG
CGAAGGCCGTCGTTGTGTCTGCTGCGAAGCTGGACGAGCGCGGTGTTGTG
TGGGTTGGTGATCAGGGCCTCGTCTTGTCGGGCAACAACGAGGTTGCCTA
CACTGCGAAGGCCGTCGTTGTGTCTGCTGCGAAGCACGTGGCCGACCCCA
CTGTTTCGTTCAAAGAACCCTCCTTCCACAAGTCCGACCCTTCCCCGTCC
TCCACTGCTGCCGACCCCAATGATGGTGATGGCGACAAGAACGTCCCGGC
TCATGATGCCGTCTCCACCTCTACGCACGTGGCCGACCCCACTGTTTCGT
TCAAAGAACCCTCCTTCCACAAGTCCGACCCTTCCCCGTCCTCCACTGCT
GCCGACCCCAATGATGGTGATGGCGACAAGAACGTCCCGGCTCATGATGC
CGTCTCCACCTCTACGACGACGGCAACATTAACACCAGCAGCAACGGCAG
CGGCAACGCCAACGGCAACGCCTACGGCTACGACGGCAGCAGCTACAACA
GAAACGGCACCAGCCACAACAGCAACAGCCACAACAGCAGCAGCAGCAGC
AACAGCAACGGCAACGGCAACGGCAACGGCAACGACGGCAGCAGCCACAA
CAGCAACAGCAACAGCAACAGCAACAGCAGCGGCAACAGCAACGACAAGA
AAGGACCTACACGACGGCAACATTAACACCAGCAGCAACGGCAGCGGCAA
CGCCAACGGCAACGCCTACGGCTACGACGGCAGCAGCTACAACAGAAACG
GCACCAGCCACAACAGCAACAGCCACAACAGCAGCAGCAGCAGCAACAGC
AACGGCAACGGCAACGGCAACGGCAACGACGGCAGCAGCCACAACAGCAA
CAGCAACAGCAACAGCAACAGCAGCGGCAACAGCAACGACAAGAAAGGAC
CTACACTCCCGAACCCCGCCAAGACGGCCATGGTGTACGCCACGTCAATC
GACGGCTCCGTCGTGCACGCCACGGCCACCGGAACGCCGCCGGGGGACCT
CGAGGACCAGACCATTGACCCGGTGTCGCTGAACTCCCGAACCCCGCCAA
GACGGCCATGGTGTACGCCACGTCAATCGACGGCTCCGTCGTGCACGCCA
CGGCCACCGGAACGCCGCCGGGGGACCTCGAGGACCAGACCATTGACCCG
GTGTCGCTGA
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