mRNA_E-siliculosus-1a_F_contig11825.1175.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11825.1175.1
Unique NamemRNA_E-siliculosus-1a_F_contig11825.1175.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11825.1175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11825contigE-siliculosus-1a_F_contig11825:930..1430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size342
Model size501
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11825.1175.1prot_E-siliculosus-1a_F_contig11825.1175.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11825 971..1312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927701.6004603-UTR-E-siliculosus-1a_F_contig11825:929..9701622927701.6004603-UTR-E-siliculosus-1a_F_contig11825:929..970Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11825 930..970 +
1696318644.7185354-UTR-E-siliculosus-1a_F_contig11825:929..9701696318644.7185354-UTR-E-siliculosus-1a_F_contig11825:929..970Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11825 930..970 +
1622927701.6374533-UTR-E-siliculosus-1a_F_contig11825:1312..14301622927701.6374533-UTR-E-siliculosus-1a_F_contig11825:1312..1430Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11825 1313..1430 +
1696318644.7376778-UTR-E-siliculosus-1a_F_contig11825:1312..14301696318644.7376778-UTR-E-siliculosus-1a_F_contig11825:1312..1430Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11825 1313..1430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927701.6196725-CDS-E-siliculosus-1a_F_contig11825:970..13121622927701.6196725-CDS-E-siliculosus-1a_F_contig11825:970..1312Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11825 971..1312 +
1696318644.728151-CDS-E-siliculosus-1a_F_contig11825:970..13121696318644.728151-CDS-E-siliculosus-1a_F_contig11825:970..1312Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11825 971..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11825.1175.1

>prot_E-siliculosus-1a_F_contig11825.1175.1 ID=prot_E-siliculosus-1a_F_contig11825.1175.1|Name=mRNA_E-siliculosus-1a_F_contig11825.1175.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=114bp
MVAECLPSLTTPPDTNTAYTKNKRKRPFRHSWPPTHPVTTSLRRDGTATH
KHRSISPRGGQPPPPRCTTVLATLKPKRIQRMIANRYHIRLLPATTTQLV
ATVQETTRSTAIR*
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mRNA from alignment at E-siliculosus-1a_F_contig11825:930..1430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11825.1175.1 ID=mRNA_E-siliculosus-1a_F_contig11825.1175.1|Name=mRNA_E-siliculosus-1a_F_contig11825.1175.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=501bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11825:930..1430+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACAAGAGCGCGAAACGCAAACAGGAAACGACTAAAAACTAATGGTTGCA
GAGTGTCTACCGTCGCTCACGACACCGCCAGACACCAACACCGCTTACAC
AAAAAACAAAAGAAAACGTCCGTTCCGTCACTCTTGGCCACCGACTCACC
CCGTCACAACCTCTCTCCGTAGGGATGGGACTGCAACACACAAACACCGC
AGTATTTCTCCCCGGGGCGGGCAACCCCCTCCTCCTCGGTGCACTACTGT
TTTAGCGACGCTCAAACCAAAGAGAATTCAGCGTATGATTGCCAACAGAT
ACCATATACGTCTACTACCTGCGACGACAACACAATTAGTTGCCACCGTA
CAGGAAACTACACGGAGCACAGCCATACGTTAGGGGGCAGAAATCTCCAC
CAACAACTGGTCGCGTACACACACAATGCAAAACTCAACACACACAACGT
ATACACTACGGCTGCATGAGCGCAGAGGCCTTCTAGAACGTACCGTACCA
C
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11825:930..1430+

>mRNA_E-siliculosus-1a_F_contig11825.1175.1 ID=mRNA_E-siliculosus-1a_F_contig11825.1175.1|Name=mRNA_E-siliculosus-1a_F_contig11825.1175.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11825:930..1430+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTGCAGAGTGTCTACCGTCGCTCACGACACCGCCAGACACCAACAC
CGCTTACACAAAAAACAAAAGAAAACGTCCGTTCCGTCACTCTTGGCCAC
CGACTCACCCCGTCACAACCTCTCTCCGTAGGGATGGGACTGCAACACAC
AAACACCGCAGTATTTCTCCCCGGGGCGGGCAACCCCCTCCTCCTCGGTG
CACTACTGTTTTAGCGACGCTCAAACCAAAGAGAATTCAGCGTATGATTG
CCAACAGATACCATATACGTCTACTACCTGCGACGACAACACAATTAGTT
GCCACCGTACAGGAAACTACACGGAGCACAGCCATACGTTAGATGGTTGC
AGAGTGTCTACCGTCGCTCACGACACCGCCAGACACCAACACCGCTTACA
CAAAAAACAAAAGAAAACGTCCGTTCCGTCACTCTTGGCCACCGACTCAC
CCCGTCACAACCTCTCTCCGTAGGGATGGGACTGCAACACACAAACACCG
CAGTATTTCTCCCCGGGGCGGGCAACCCCCTCCTCCTCGGTGCACTACTG
TTTTAGCGACGCTCAAACCAAAGAGAATTCAGCGTATGATTGCCAACAGA
TACCATATACGTCTACTACCTGCGACGACAACACAATTAGTTGCCACCGT
ACAGGAAACTACACGGAGCACAGCCATACGTTAG
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