mRNA_E-siliculosus-1a_F_contig1182.1173.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1182.1173.1
Unique NamemRNA_E-siliculosus-1a_F_contig1182.1173.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1182.1173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1182contigE-siliculosus-1a_F_contig1182:19167..26218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size210
Model size212
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927700.9226182-CDS-E-siliculosus-1a_F_contig1182:19166..193111622927700.9226182-CDS-E-siliculosus-1a_F_contig1182:19166..19311Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1182 19167..19311 -
1696318644.300971-CDS-E-siliculosus-1a_F_contig1182:19166..193111696318644.300971-CDS-E-siliculosus-1a_F_contig1182:19166..19311Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1182 19167..19311 -
1622927700.9359875-CDS-E-siliculosus-1a_F_contig1182:26153..262181622927700.9359875-CDS-E-siliculosus-1a_F_contig1182:26153..26218Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1182 26154..26218 -
1696318644.310266-CDS-E-siliculosus-1a_F_contig1182:26153..262181696318644.310266-CDS-E-siliculosus-1a_F_contig1182:26153..26218Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1182 26154..26218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1182.1173.1prot_E-siliculosus-1a_F_contig1182.1173.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1182 19167..26218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1182.1173.1

>prot_E-siliculosus-1a_F_contig1182.1173.1 ID=prot_E-siliculosus-1a_F_contig1182.1173.1|Name=mRNA_E-siliculosus-1a_F_contig1182.1173.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=70bp
MQCGSRLLSTWTAPRRPRCLSRRFPTSRRAIGTSVPLGREVTRSSTGHGA
QRDALDPLRSRVKFPPPVAE
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mRNA from alignment at E-siliculosus-1a_F_contig1182:19167..26218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1182.1173.1 ID=mRNA_E-siliculosus-1a_F_contig1182.1173.1|Name=mRNA_E-siliculosus-1a_F_contig1182.1173.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7052bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1182:19167..26218- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAATGTGGGTCCCGCCTGTTGTCGACATGGACAGCTCCTCGGCGCCC
GCGGTGCTTGTCAAGGTATGATGACACACAACCTATCGGCGCATGATATG
TGCGGTTACTGCTGTAGACTGATGCTGAAATAGACTTGCCGGGAAAATCC
CCACAACAATCGTCTTGTGCTGCTGTGTGCGCACAGGAATGACATGCAGC
AGGGCTACATTTAGACACACCAGCAGTTGGCAACGTGCCCACCCACCCAC
AGACTGGACGCTGTCGGCGCTGTCGGAAAAATGGAATGTCAACACCTCCG
TGCTGTACAATAGCTCGAACCTCGACCAGCTCCCCCCGAACCCAAGATCA
AGAAAAAAAAAAAAGTGCCAAACAATGACGTCCCCACGACAACATGCAAC
ACCGGTATCTGTCCCAAAAATATTCGATGCACCCAGGGGGGCGCACACAA
GCCATGCACCCACACTTGGCAGTCCCGCCTATAATGCATGCCCAAATCTG
AAAATTGAAAAATGGACGAGAGTATTTAGACGAGAGTATTGAATACGAAA
AAGTACACTGAAAAGTGTAGAGTGAGGGTCCCGGTTTAGCGACCCCTACA
GTTAGTGCCACGACGAAATATGGTCGCTGTTCAGGGCATCTCGCTAAACC
CGGTTGAGGTCGCTAAACCGGAAGCCTCAATAGCGACTAGCGGTCGCTAA
ACCGGGAAAAGGGGCCATTTCGTTAGACTAAAGGCCGTGTTGCACAAATC
TTCTTGACCGGGTCATGTATGCGTCGTATTGCAGCAGTCAAATGAAGGTA
GAGGAAAGAAGAAGCACCTTAGGGTGGACAACCGGGGAGTAGTTCCTACA
CGGTATGCGTTCCAATCTACCAGCAAGCTTGTTGTACCCTCCGAAGTTAG
TAGGAAATGTCTCAACAACAAGTGTACCGAGGGTGCCCTGTGTCTTTCTA
TTTTCCCTCATGATGAACAATCTGTCCTTACGTGTACCAACACAAAAAAA
CATGTCGAAGTCCGATCTGCGAACAATACAAAAACAAAGGCGGGAAAGGC
GGAAAAATTATGGCTACGTCCCCAAAAAACTGAAATAAGAGCCCCCACAT
GGCACGGAGAGAGTTCGTGAACGCCCAAGCGGACACGTCCCCAAAAAAGT
GAAATAAGAGCCCCCACATGGCACGGAGAGAGTTCGTGAACGCCCAAGCG
GACAAGAACCTCGCGCTGCTAATTGGTGACTTCATTCTGCTACAATCGCG
TGTACCGATCATGTTTAACTAAACATATCTGTGATGTGGGTCTGTCGCGC
TGGTTTCGCGGAATATGCTTCGATGAACGGCATCTTTGCCTCTCCGTCAC
ATCGCTCCATGAGTTCATAGCAGCAACAGATAACGTTTGTTCACGGCAGC
CGCAGGTACTGGCCTTGTGTGGTCGTACTCGGGATGACGGCATGCTTCCC
TCCTCCACTGCCGAGACTGCGTTTGTGCTTGCGTATCGCCCGGTGTCTGC
TGACCCCCTGTGGTGCTTTCGGATTTGACTCCGTTCCACACAAGTTGGCG
AGCCTTTTCTGTGCACCGTTTGGGTGTGCGTCATGCCGTTCATTTTCCTT
CTGTTCTTCGTGAAAACTTGACTCTTTTCTTCGGGCCATCTTTCCCCCTT
GAAAGCAGCTGACTTGGAGAAACATCTTCTACACAAACCGAGGGGTGCGT
ACAAACGCACACCTAGACGGATCGTACATGAGCGACTTGCGGCATTGCGC
ACCTTTTGGTCGGATATTTTGGCCGGATATTTTGATGTCCCGGTCCGACA
CGGGTTCTTTTGCGCTAAATAAAAAGGTGTACGGCGAAGGTCCCGACGGG
TCTTTGTGCAAATGTCCTCCTACCTGCAAGAAAGTGGCATCGAGAAATTC
TAAAGCGACACGATTCGTGGTTTGAGCGTCGACGAGAGCAGCTCGAACCC
GTTTGTGCAGCAGAGGGGACCATCCATTGGCCCACTTTGGAGAGTCAAAG
CTCTGTTGGCGCTTGACATCAGTTTTGCCAAGAATTTCGGCGACAACTCC
TCGGCAGCTGGAAGAAAAACGGGAAAACTCGTCCGGATTCAAACCAAGCG
ACAAGCCATTAGCACTGTCCAAATGTTCAGACTTCGTGTTGTCCATCTTG
TTTTGAATGCGAATGAGATCTGCGTCGGCTGTTTCAGCTGCAGCGGCGTC
CAAAGCCTCCTGGGGCTCCCTCGCTCCTGTGGCCGACAAAGGCAGAGCAG
CGTCATCCGGTAGCGAAACCCTCGGCGAAACATCCTCCTGGGACTGCGCA
TCGGAGTCCCCTGTCACACAGCCTGCACCTGTCAAAACGGACACCCGCTA
AGAGACAAAAGTCTGCTTCAACGGAGGTCTTGACACCGAAGGTCGCCCAG
AAAGTTCCTACCGCAAAGGGCTCGTGTCCAGTGCAATCGAAGGCGCCGGC
GAAGGTGCACGTGAAGCTTGAGCGTGAGGCGAAGCGGGAAATATGGAGGC
ACTAAAGGCCAGATCTTGTGACAGTTGAGGATGGTGCGGTGGCTCGTACA
TAGCCTCTTGTTCAGAGACAGAAGCAGTGACAGGTTGGCTGTACGAGAAG
AAATGGGTGCTGTACGCTCGGCTGATGGGATCTCAAACGGGCATCCATAC
CCGCTGCGCGGCTCGGCAACTGTGAACGTGAAGCTTCGACAATGCGCTCG
TCGGCGCTGTGTACAGATTCTCGCGAAACGGCAACAGCATTCTCGCCACC
ACGGTGCGGTGGCTGTGACGATCGCTCCAAAGATCCGGGTCTGTTTCCAA
ATGGAGCTTGATGTCAGGCTTGAGCAAGGAGGTGGCGTTCACAAAACCTC
GCGTGCAGAGTTTGAAAAATGGTCCTCGCCCGACTAATTGAGGCTTTTGC
CCTTGCACAGCTGAAGACCATCTCGCCGAGCTTCGCCAGCAACCAACGGG
GTGAATCAAGCCACCGGGTTAGTACCGAACGAGATACACATGGGACGAAT
TCCGCGACTACCGCTTTCGGTGTACGATCACCCTGCGGTAGGCGGTCATC
AGAATGCAACTTGGCTCTGGACCGTCAACATCGGGCGTACGATCTCGTCC
GGGAGGACAACCCGCTCAAAGGTTCGCTTGTCGAGCGTCGCAACTCCTCT
CCTCTTGACGCCTTCAACAAGCTCTCTACGATTACCGCTGGTGGTTGGGC
TTGGATGTACAACACGGCCGCAACCATTGGGCAAGGGGCCAAGAAGGACA
AGGATCAACGGGTGCCAAAGTTTTCGCTTTCTTGGACAGGGCCCTACAAA
GTTCTTGCTGTGGGTCCCGCCTCTGCTGAAGATATTCCAGATGGCCGAGC
TTTGCGCACAAACTGCTGTACTGGATCTTCCTTTGGATAATTCTGGTCCG
GATGCTCGCGCCCTTGTCTCGGTCCTACGATGCACACCCTGTCGTAATCA
GTATGACACGGACGGTATCGCCGCAGTCTCTGCCTGCTGATCTTTGGCGG
TTTCTTTTGCATCCTTTTGTGGACAATTGCCCGCCGTTCCGTGTCACCGA
GGATGACGTATCTGCGCCCGTAGGTCGTCTTGAAGTGGAACTCACATCTC
GGGGACATCAATTGGTTCGGCATCGTAACGGCATCCTCGCGGTGTTGTAC
CAGACTCACTGGATCGGCCTCACCACTCCGTCTTGGGAACGAGAATCCGA
TCTGGATAAGTTTCGTCGGCGCATTCTTTCGTATTGGTCCAAAGCGCAAG
CAGAACAACCGCAGTATTCGCGTGACTCGTACTCGCGTAGCACACCGCGA
GATTGCAAGGTCTCGAGGAGAACGATACATGCCTCCAGGATTTAGTCTTG
TGTCTCACGAGACTTTGCTTCGTCGCTTTGGTGCCTCTCTTCTGCCGGTC
GGCGCAAGGTTGTGGTACAAAGCATGCGATGGCCTGAGGTGGAATGGTCA
AATTGGGGCTCATCAGGACGGATCGTGCGTCGTTCGGCTTTTCGATGACC
CGGGTCCCAGGATTCTCCCTTTGCCCACGGTATTGTACTCTACCGCTTTG
GACGCGGCGTGCGGATCGTGGTGTTTGGAGAAACGTCGTTCGCGCCCTAT
GGGCGACACCAATGTCTGGACACCGCTTCGTGCTGACTCATTACCGTAGC
TTCTCACGATTTCTTCTTGGCGTTGTTTGTTGGGGAGCGTGTTTTCCTAA
TTTGGTTTCCTGCATTACACATTGATTTTGTGTGTCTTCACATATTTCAG
ATTTCTCTTTGTATATGTGATTTTCTGTTTTGGTTTCTTGTACTTTGTAT
TTTGGACGACAGGACACGAAAAGGAAAGAAAAGAAAAGAAACGAAGAAAC
GCCAAGCCTAACAAGAGTCCCGTGTCCAACTTTGTCGTTTCTTCGTCAAC
CGTTGTAGCTGACTGGAATTGAACGAGTGCCTCCCTCTCTGAGCAGGTTT
TGGCGGGGTGATATCTTCATGGACCGTGACAGATGTCTTTTTCCTCGTTG
GATGTGTGTTCATCCACCAGTGGACTACCGCGACCTGGATGTGTGTCATT
ATCTTGTGTTTTGGGTTGTGGGTTGTTCCTTTGACGCTTGTCCGCGCTTG
TAGCCGTCTTCAATATGTCACATCATCGAAGTTCAGAGCAGTCGAGGCAT
GGGTGGGTTCGTTTTTTTACCAGATGTAGTTTTGGGGGTGCCATTTGGCG
TTTCCCCACTTGTTCGTCGGTGTCTTTTACCTCCGAACACTTGGAAAAAG
AGTTCCCCAGGTTTCATCGTCCACATTGCAACTGATGTCTGTTTTCTTTG
CTTCGTCATGACGGAGGTGTGCTAAATGCACTCACTCCATCCTTCGGGAT
TCCATGCAGTTGCGTTGCCTTCTCCTGCGGCATTCGTCGACGCTCATCAT
CACCCACTTCATCGAACTTCTTCTCCGCCATTGTCACCTTCTAGCGAAGA
CTTCATCGCCGTAGAGAGTGTGAGTTTCAGTGTTGTGTGTGTTTATGTGT
TGTGTGTTTGTGTGTTCAATATCGCCAGCTTGCGCGAGATATGGGGCGAT
TAGTATCGTCCCTTTTTCCGGCCTTGATCATCTGTACATCGGGCCATCTG
TTTCACCTAGGTTTAGACTCTAACGTTCCTTCTGCGATTTGGTTTGACTG
GCAAAATGGGAACCATTTCAAGTGTTTCGTGCCTATCATCCATTTGGTCA
TGGACGTTTTCATGCTGCGCTTCATTTTCCTCTTCGTCGCGTCCATCGTT
TCGACGGCCGTATCTGTTTGGGCACCTTTAGTTACTTGCGTGTAGGTTTT
GTCTCTGGTCTAGGGCATTGTCGGCCGTGTTGATGATTCAACCTGTGTGG
CCATGCTTTCCTTGATCAGCGAAGTCAGCTCTATCACCCTGTCATTGAGT
ACCCGCAATGTCTTCTCATGGCTCCTACTTCGTTGGATCTTGAGTTTTTG
CTGTTGGCGTTATTCTGGACTCTCTCTTCCCACGTTCCTCCAGTAGTGAT
ATGCGCCCGTGCGCGTTAAAGGGTGGTGTGTGTCGTTTTGGATTTTGGTT
TCGTTTCTGTCATTCAGAGTAATGTGCTTTGCAGCATATTACCTAGCTAT
ATCCCTTCATCGGCACGAGCATTGTCATTGAGCCGCAGTTGTGTTGTCAA
GTTGTCGTACGCAAGCTTTGTCTCAATGGTGGCGTGGGGGGTAGATTCGG
GATATTTCTACAGCTCCCCTTCCTTTGGATGCTATTGTGAAGAGTCAGCT
CTTTCGATTCATGATCATGAATCATCAGCTAATACTGAGCTTCTAGGATT
TGAGTATAGAATCTGCATAGGTGATGTTCAGGGTAGGCTATGCTAAGGAG
CGTTGCTGTAGGGCATAGAAATGGTACATGTTGGTCTAGAATAGGATGTG
GAATGGCCGGGAGGTATACATCTGAGGGACCATACCACATCAGGACACAG
CTAGCTGCGTGACCCCTGGTTTCGAGGTGGATCCCCACCTCAACCAGACC
TTTCTCTCTCTCATCAATTCAAGCAACATCCCATTTCTACACAGTCGTGG
AGGCAAGGCATCAAGCGACCGTACCTCTTTCTTTATCCTAGGACCCAGCT
GCTTCCAACAGCTGGGTCCCCTTCATATATGCCCAATCAATATCCACCTG
GGCTACGCCAACACCATCAGAACTTAGGAAATTGTACACACACAACAGCA
ACGGGTGCTCGTGAGAACATTCAGCCATGGGTACCACAAATAATACCCGC
CGCCCAACATCTCCCAACATACTCCTCTACACCTCCCCAGCATCACATAC
AGCCAATCAGATACACGAGATAGCCACCTGACTGTCTTGTCGAGCCTGTT
GCCCACAGGGGAGATATCGCCATATGCTGCTGCTCTGGGAACCGTACAAA
TACGGACTCACATCTGTGGAAGGGATGGATTTGTTGTGTTTTTGGCAAGA
AAAAATCAAGCCGTATGCACGTAGTAGAGCAGTCTCAATAACTAATAGAG
TTATAGAAACAAACGCACCCTGCATGTTGTATGTACAAGGCGGATGACAC
GGCCACTAAAGTAGGGGGGGGGGTGCCAGAGACACCAGGCTGTCGAACGT
GCGTCAAGTGGACGGCAAGTATCGAGCCCTCCATTCGAGAACAGCGGGAG
GGCCCAGAGACACCGCCCCACACCTCAATCAATTGCCAGCAGCATTTTTT
TTAGACCCGAATGTATGCGTATTTACTGCACAATACGACACCGTTTTTGC
CGTTCACCGACAGATCTGCTGCTGAACCACACTCATACGATCCAACCCCT
CATATTGCCACCATCATGGTGCTGTGTGCATTTACATGTACCTGACTCGG
TGCTCCCGGTTCGAATTCGTGACATTGGGCCCGGCGGCCCGGTTGGATCT
TCCCCAGAAGGTTTCCAACATCTAGGCGTGCTATTGGAACAAGCGTCCCC
CTGGGAAGAGAAGTGACGAGGAGTTCGACAGGACACGGGGCTCAGAGGGA
CGCGTTGGATCCGTTACGCAGCAGAGTAAAATTTCCGCCCCCTGTCGCTG
AA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1182:19167..26218-

>mRNA_E-siliculosus-1a_F_contig1182.1173.1 ID=mRNA_E-siliculosus-1a_F_contig1182.1173.1|Name=mRNA_E-siliculosus-1a_F_contig1182.1173.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=420bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1182:19167..26218- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAATGTGGGTCCCGCCTGTTGTCGACATGGACAGCTCCTCGGCGCCC
GCGGTGCTTGTCAAGATGCAATGTGGGTCCCGCCTGTTGTCGACATGGAC
AGCTCCTCGGCGCCCGCGGTGCTTGTCAAGAAGGTTTCCAACATCTAGGC
GTGCTATTGGAACAAGCGTCCCCCTGGGAAGAGAAGTGACGAGGAGTTCG
ACAGGACACGGGGCTCAGAGGGACGCGTTGGATCCGTTACGCAGCAGAGT
AAAATTTCCGCCCCCTGTCGCTGAAAAGGTTTCCAACATCTAGGCGTGCT
ATTGGAACAAGCGTCCCCCTGGGAAGAGAAGTGACGAGGAGTTCGACAGG
ACACGGGGCTCAGAGGGACGCGTTGGATCCGTTACGCAGCAGAGTAAAAT
TTCCGCCCCCTGTCGCTGAA
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