mRNA_E-siliculosus-1a_F_contig1181.1170.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1181.1170.1
Unique NamemRNA_E-siliculosus-1a_F_contig1181.1170.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1181.1170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1181contigE-siliculosus-1a_F_contig1181:33267..33446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size180
Model size181
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927700.8865442-CDS-E-siliculosus-1a_F_contig1181:33266..334461622927700.8865442-CDS-E-siliculosus-1a_F_contig1181:33266..33446Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1181 33267..33446 +
1696318644.292206-CDS-E-siliculosus-1a_F_contig1181:33266..334461696318644.292206-CDS-E-siliculosus-1a_F_contig1181:33266..33446Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1181 33267..33446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1181.1170.1prot_E-siliculosus-1a_F_contig1181.1170.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1181 33267..33446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1181.1170.1

>prot_E-siliculosus-1a_F_contig1181.1170.1 ID=prot_E-siliculosus-1a_F_contig1181.1170.1|Name=mRNA_E-siliculosus-1a_F_contig1181.1170.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=60bp
CAWSCAFLRGNCCGVSRTHAESHPWTVLSVPTLHLAFGTAPGSAGCSSCN
ICIATTSHSE
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1181:33267..33446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1181.1170.1 ID=mRNA_E-siliculosus-1a_F_contig1181.1170.1|Name=mRNA_E-siliculosus-1a_F_contig1181.1170.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=180bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1181:33267..33446+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCGCTTGGTCATGCGCTTTCTTGCGGGGCAACTGCTGTGGTGTGAGTCG
CACACATGCCGAGAGTCACCCCTGGACGGTACTCTCAGTTCCGACACTCC
ATCTAGCCTTCGGTACGGCACCTGGGTCTGCCGGGTGCTCTTCTTGTAAC
ATCTGCATCGCTACCACCAGTCACAGTGAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1181:33267..33446+

>mRNA_E-siliculosus-1a_F_contig1181.1170.1 ID=mRNA_E-siliculosus-1a_F_contig1181.1170.1|Name=mRNA_E-siliculosus-1a_F_contig1181.1170.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1181:33267..33446+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCGCTTGGTCATGCGCTTTCTTGCGGGGCAACTGCTGTGGTGTGAGTCG
CACACATGCCGAGAGTCACCCCTGGACGGTACTCTCAGTTCCGACACTCC
ATCTAGCCTTCGGTACGGCACCTGGGTCTGCCGGGTGCTCTTCTTGTAAC
ATCTGCATCGCTACCACCAGTCACAGTGAGTGCGCTTGGTCATGCGCTTT
CTTGCGGGGCAACTGCTGTGGTGTGAGTCGCACACATGCCGAGAGTCACC
CCTGGACGGTACTCTCAGTTCCGACACTCCATCTAGCCTTCGGTACGGCA
CCTGGGTCTGCCGGGTGCTCTTCTTGTAACATCTGCATCGCTACCACCAG
TCACAGTGAG
back to top