mRNA_E-siliculosus-1a_F_contig1180.1168.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1180.1168.1
Unique NamemRNA_E-siliculosus-1a_F_contig1180.1168.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1168.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.640e-51
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 ASSITEGLSFVGFEPLELEDVPQEAVQARTWGDQANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKADVTPSFRSRSEGFFPSSTILSRNSSSPSSSG 297
            ASSITEGLSFVGFEPLELEDVPQEAVQARTWGDQANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKAD TPSFRSRSEG+FPSSTILSRNSSSP S G
Sbjct: 1703 ASSITEGLSFVGFEPLELEDVPQEAVQARTWGDQANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKADATPSFRSRSEGYFPSSTILSRNSSSPGSGG 1801
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1168.1 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.080e-49
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 ASSITEGLSFVGFEPLELEDVPQEAVQARTWGDQANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKADVTPSFRSRSEGFFPSSTILSRNSSSPSSSG 297
            ASS+TEGLSFVGFEPLELED+PQEAVQARTWGDQANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKAD TPSFRSRSEGFFPSS ILSR++SSP SSG
Sbjct:  666 ASSMTEGLSFVGFEPLELEDIPQEAVQARTWGDQANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKADATPSFRSRSEGFFPSSIILSRSNSSPRSSG 764
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1168.1 vs. uniprot
Match: A0A835YL13_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL13_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.880e-5
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:   43 PLELEDVP----QEAVQARTWGDQA-----NLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKAD 207
            PL+ ED P       VQ   +  Q      NL +G+ +GH+AE G+RR MEDRT  +AD+F +D
Sbjct:   80 PLQPEDFPGVDVTAPVQVHHFNQQIPHAKMNLALGLCFGHAAETGNRRTMEDRTTVIADLFASD 143
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1168.1 vs. uniprot
Match: A0A835YK53_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK53_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.170e-5
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  100 QANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFK 201
            + NL +GVR+GH AE GSR  MEDRTVA+ADIF+
Sbjct:   11 KVNLKLGVRFGHFAEQGSRDSMEDRTVAIADIFQ 44
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LIK7_ECTSI2.640e-5195.96cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5L844_9PHAE1.080e-4992.93PPM-type phosphatase domain-containing protein n=1... [more]
A0A835YL13_9STRA6.880e-542.19Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A835YK53_9STRA9.170e-567.65Phosphatase 2C-like domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1180contigE-siliculosus-1a_F_contig1180:27959..30130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size297
Model size297
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.T
EC2.7.11.17,3.1.3.16
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EggNOG free text desc.peptidyl-threonine phosphorylation
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
Preferred namespnA
Seed eggNOG ortholog2880.D8LIK7
Seed ortholog evalue2.4e-44
Seed ortholog score184.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1180.1168.1prot_E-siliculosus-1a_F_contig1180.1168.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1180 27959..30130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927700.721085-CDS-E-siliculosus-1a_F_contig1180:27958..281531622927700.721085-CDS-E-siliculosus-1a_F_contig1180:27958..28153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 27959..28153 -
1696318644.1938791-CDS-E-siliculosus-1a_F_contig1180:27958..281531696318644.1938791-CDS-E-siliculosus-1a_F_contig1180:27958..28153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 27959..28153 -
1622927700.7320042-CDS-E-siliculosus-1a_F_contig1180:28764..288241622927700.7320042-CDS-E-siliculosus-1a_F_contig1180:28764..28824Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 28765..28824 -
1696318644.2190313-CDS-E-siliculosus-1a_F_contig1180:28764..288241696318644.2190313-CDS-E-siliculosus-1a_F_contig1180:28764..28824Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 28765..28824 -
1622927700.7450047-CDS-E-siliculosus-1a_F_contig1180:30088..301301622927700.7450047-CDS-E-siliculosus-1a_F_contig1180:30088..30130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 30089..30130 -
1696318644.229968-CDS-E-siliculosus-1a_F_contig1180:30088..301301696318644.229968-CDS-E-siliculosus-1a_F_contig1180:30088..30130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 30089..30130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1180.1168.1

>prot_E-siliculosus-1a_F_contig1180.1168.1 ID=prot_E-siliculosus-1a_F_contig1180.1168.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1168.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=99bp
ASSITEGLSFVGFEPLELEDVPQEAVQARTWGDQANLTVGVRYGHSAEIG
SRRVMEDRTVAVADIFKADVTPSFRSRSEGFFPSSTILSRNSSSPSSSG
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mRNA from alignment at E-siliculosus-1a_F_contig1180:27959..30130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1180.1168.1 ID=mRNA_E-siliculosus-1a_F_contig1180.1168.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1168.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2172bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1180:27959..30130- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCATCGAGCATTACCGAAGGCCTGAGCTTCGTCGGGTTTGAGGTGATGCA
ATGCAGTCTGGTTTTGCTGAACCCGGGTACCCGAAGGAAACGACCCTTCT
CTCCCCTCCCCCACTACCCCCTGGATGTCTATCCTGCCGTTGTATGCATA
TGTCGTTTTTCAACCTCAAACCTGCTTTTTCTCGGGGCGTCAGTCTTGTG
CCCGTATCCTGCTGGGTCTTCGCTGTACAATGATGCATCAGATTCATCCC
ATCGAAGCCGTTTGCTTTTTTTCCCGATCGCCCCCCCCTTCCCCGCCGGC
GGCGGACAGTTCATGCTTGCCGTTGTGATACTTTTTGTTCCGAGCCAAGT
CGAGTACATCTTTGCGGGCAGTCAGTGAGTGAGTGGCCTGCGTGTGTTTT
CCACGGAACCGGTGTATGTGCGCAGACGCAAGTCTTGTGGCGGCCAGGTC
AAAACAAGACCCCAGGAGGGTGCATACAACCAAGTCTCGGGGGTAGGACT
CGTTTCGTCCGAGTCTGCGCCGGCATGCTTTCAACACCAAGCCAGAAGTA
CACTTCTTCTGCCCCCCCTAAAGATCTGGATTTGTTTAGACTAAGCAAGC
GCTACATACACAGTGTGATTATTTTCAAAAGGCCGAAGAGATAAGTGCTT
GCTTTCCTTTTATCCCCTGTTTTTAGTATTTGGCGCCACTGTATTGAGCT
CGATGCTTTCCTTGGGGTCGCGGATGACCTCTGTTTTTGTTGTTCTGGTC
GGGGTGATGATGACGTCTTATTTTTGCTCGTGTTGAGAGGATCCCTTTTA
TAGATTGGATGGATCTTCAAAGTCGATCTTAGTCGTGTCAGGCCTTGACT
AGGGCTTTTGAAGACATGCTGCAGCGCAGCGCACAATACCAGAAAATTGG
CTGACCCTTCCTCTTGCGTGTGTGCAGTCATACAGTTTTTGGTAGATGCG
ATGAGCTTCTTTCGCAAAGAAATGTGAAAGGCATTGGGCCGCTTAAGGGA
TTGTCTTTTTTTTTTTTATTCATTGGCGTCGACCGCGCTAACCGGCTTGG
GTGTGTGGTCCGTGGCTGGTACGCACAACAAGCTCACCGAAAATGTTTTC
TAGAACAGGATATACGTATTATGTATCGAAGGAAAAAAAGAAAAGAAAAC
GTCTACAGAGACAACGCCTCCTCCATCATTGCTCGTTGTATGAGCGTGAG
CTCCCCAATTTGGGAGGCATCCAACGAATTGTAGTTTCGAGAACAAACGC
ACTTGAACCTTCTATCTTCCCGTTTTTTTTGTATTTTTGCTCTCTCCGGT
GCATAGCCGCTTGAACTGGAGGATGTCCCCCAGGAAGCCGTGCAGGCTAG
GACGTGGGGTGATCAGGTGTGGCGGGAGTTGGTTGTTGTGACGGCGTTTT
GTGGGCGAGCTATCTAAGTCTGTCTTGCTGACCTGTGGGAAAAGAAACGA
AGGCCTGTTCGTTCTCTGCGCCTACGCGGTGACTTGTCGTCGTCGACAGG
CTGACTGACGTTGCCCTACGGCCCGGCGGCGAAGAGGCTACGTTCTTGAC
ACTGCTGTAGCGCCAAATTGACGAATGCATGAACGGGGAAAGTGTGATGG
ACGGAGGACTTGCTACGTTTTTTGCAGCAATTCGTCGGAGGATGGACCTG
CATTAGCCGAAAACTGCTTGTGATGCTGATGCTATGTTCCAGAGAGTGTC
CAGCCTCAGTTGTCCAGCCCCTCTGTGATGTTAACTCGTGGTCGCTGCCC
GATTACACACACGCGCCGGAGTTCGTCGTCCCTTGAAGTTGAATATCTTC
CATTTTTCTGGCACAATCCTGTTTGTTTGGTTGATTCCCGAAAAGGTTCA
CCCCCCTGAGGAGTGCGAATAGAGTTTCTATAATAGTCCATAGACAAGGT
GAGTCCCGGTTGCGCTACCGTTCTCTTTCCATCGCTAACACGTACACGCA
TGCTTTTTTGTCGACACCAAAACGCAGGCAAACCTTACCGTGGGCGTCCG
CTACGGCCACTCGGCGGAAATCGGCAGCCGGCGGGTAATGGAAGACCGGA
CGGTGGCCGTGGCCGATATCTTCAAAGCCGACGTTACGCCGTCCTTCCGG
AGCCGCTCCGAGGGATTTTTCCCAAGCTCGACCATCCTTTCTCGCAACAG
CTCCTCTCCTAGCAGCAGCGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1180:27959..30130-

>mRNA_E-siliculosus-1a_F_contig1180.1168.1 ID=mRNA_E-siliculosus-1a_F_contig1180.1168.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1168.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1180:27959..30130- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCATCGAGCATTACCGAAGGCCTGAGCTTCGTCGGGTTTGAGGCATCGAG
CATTACCGAAGGCCTGAGCTTCGTCGGGTTTGAGCCGCTTGAACTGGAGG
ATGTCCCCCAGGAAGCCGTGCAGGCTAGGACGTGGGGTGATCAGCCGCTT
GAACTGGAGGATGTCCCCCAGGAAGCCGTGCAGGCTAGGACGTGGGGTGA
TCAGGCAAACCTTACCGTGGGCGTCCGCTACGGCCACTCGGCGGAAATCG
GCAGCCGGCGGGTAATGGAAGACCGGACGGTGGCCGTGGCCGATATCTTC
AAAGCCGACGTTACGCCGTCCTTCCGGAGCCGCTCCGAGGGATTTTTCCC
AAGCTCGACCATCCTTTCTCGCAACAGCTCCTCTCCTAGCAGCAGCGGCG
CAAACCTTACCGTGGGCGTCCGCTACGGCCACTCGGCGGAAATCGGCAGC
CGGCGGGTAATGGAAGACCGGACGGTGGCCGTGGCCGATATCTTCAAAGC
CGACGTTACGCCGTCCTTCCGGAGCCGCTCCGAGGGATTTTTCCCAAGCT
CGACCATCCTTTCTCGCAACAGCTCCTCTCCTAGCAGCAGCGGC
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