mRNA_E-siliculosus-1a_F_contig1180.1167.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1180.1167.1
Unique NamemRNA_E-siliculosus-1a_F_contig1180.1167.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 7.700e-39
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 2
Query:    2 PSPSTPLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTDNISAAIEHGCYEMDIACLDAQFRVLGRERS 220
            PSPSTPLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQK FTD+ISAAIEHGCYEMD ACLDAQFRVLGR+RS
Sbjct: 1880 PSPSTPLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQKCFTDSISAAIEHGCYEMDTACLDAQFRVLGRDRS 1952          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.330e-35
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 2
Query:    2 PSPSTPLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTDNISAAIEHGCYEMDIACLDAQFRVLGRER 217
            PS STPLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQK FTD+ISAAIE GCYEMDIACL+AQFR+LGR+R
Sbjct:  844 PSLSTPLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQKCFTDSISAAIERGCYEMDIACLEAQFRMLGRDR 915          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A835YK53_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK53_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.040e-8
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 2
Query:   26 AAFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTDNISAAIEHGCYEMDIACLDAQF 196
            AA+FGVYDGH GD VAEALQ  LH+ I   + F ++ S AI    Y++D+ CL   +
Sbjct:  114 AAYFGVYDGHGGDSVAEALQAQLHRAIVTHQAFHEDRSRAILEATYDVDMQCLSKDY 170          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A836CA24_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA24_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.320e-8
Identity = 31/56 (55.36%), Postives = 34/56 (60.71%), Query Frame = 2
Query:   17 PLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTDNISAAIEHGCYEMDIACL 184
            P   AFFGVYDGH G  VAEALQ+ LH LI K      +   A+E  C EMD ACL
Sbjct:   52 PPPVAFFGVYDGHGGTAVAEALQQDLHHLIVKNG-LQGDPKQALEQACLEMDKACL 106          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A2D4CEH6_PYTIN (cGMP-dependent protein kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEH6_PYTIN)

HSP 1 Score: 56.2 bits (134), Expect = 1.830e-7
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 2
Query:   29 AFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTDNISAAIEHGCYEMDIACLDAQFRVLGRE 214
            AFFG+YDGH+GD  A  LQ+ LH+ I     F+ +  AAI   C  +D+  LD Q R +G E
Sbjct: 1282 AFFGIYDGHNGDATARLLQQRLHQDILSDAQFSGDPVAAIREVCERVDLEILDQQNRSVGDE 1343          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A2D4BVD0_PYTIN (cGMP-dependent protein kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVD0_PYTIN)

HSP 1 Score: 56.2 bits (134), Expect = 1.840e-7
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 2
Query:   29 AFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTDNISAAIEHGCYEMDIACLDAQFRVLGRE 214
            AFFG+YDGH+GD  A  LQ+ LH+ I     F+ +  AAI   C  +D+  LD Q R +G E
Sbjct: 1977 AFFGIYDGHNGDATARLLQQRLHQDILSDAQFSXDPVAAIREVCERVDLEILDQQNRSVGDE 2038          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A7S1CEN6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEN6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.620e-6
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 2
Query:   29 AFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTDNISAAIEHGCYEMDIACLDAQ 193
            AFFGVYDGHDGD  A  L K LH  IA+ + F  + +AA+  G    D  C++A+
Sbjct:  704 AFFGVYDGHDGDSTAIHLSKRLHYSIAESEAFATDPAAAMTDGYLRTDAECMEAE 758          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A5D6YEV9_9STRA (cGMP-dependent protein kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEV9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.640e-6
Identity = 28/57 (49.12%), Postives = 33/57 (57.89%), Query Frame = 2
Query:   29 AFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTDNISAAIEHGCYEMDIACLDAQFR 199
            AFFGVYDGH+G+  A  LQK LH  +     FTD   +AI   C  +D   LDAQ R
Sbjct: 1397 AFFGVYDGHNGEDTAVWLQKELHHRVLSHPQFTDEPKSAIFEACDTLDHEILDAQNR 1453          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A1C1CQ02_9EURO (PPM-type phosphatase domain-containing protein n=1 Tax=Cladophialophora carrionii TaxID=86049 RepID=A0A1C1CQ02_9EURO)

HSP 1 Score: 49.3 bits (116), Expect = 1.170e-5
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 2
Query:    2 PSPSTP-LCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTD-NISAAIEHGCYEMDIACLDAQFRV 202
            P P+ P    ++FGVYDGH G+ VA+   + +HK++AKQ  F   +I  A++ G    D A L+   RV
Sbjct:   55 PQPAAPDKRLSYFGVYDGHGGEKVAQFAGENIHKIVAKQDAFAKGDIEQALKDGFLATDRAILNGMHRV 123          
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Match: A0A6A5TRE2_9PLEO (PP2C-domain-containing protein n=1 Tax=Byssothecium circinans TaxID=147558 RepID=A0A6A5TRE2_9PLEO)

HSP 1 Score: 50.4 bits (119), Expect = 1.930e-5
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 2
Query:   29 AFFGVYDGHDGDVVAEALQKGLHKLIAKQK*FTD-NISAAIEHGCYEMDIACL 184
            AFFGVYDGH GD VA+   K LH++IAKQ+ F + +I  A++ G    D A L
Sbjct:   63 AFFGVYDGHGGDKVAQYTGKHLHEIIAKQEAFKEGDIKKALQDGFLATDRAIL 115          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LIK7_ECTSI7.700e-3994.52cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5L844_9PHAE1.330e-3590.28PPM-type phosphatase domain-containing protein n=1... [more]
A0A835YK53_9STRA1.040e-849.12Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A836CA24_9STRA1.320e-855.36Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A2D4CEH6_PYTIN1.830e-745.16cGMP-dependent protein kinase n=1 Tax=Pythium insi... [more]
A0A2D4BVD0_PYTIN1.840e-745.16cGMP-dependent protein kinase n=1 Tax=Pythium insi... [more]
A0A7S1CEN6_9STRA1.620e-647.27Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5D6YEV9_9STRA1.640e-649.12cGMP-dependent protein kinase n=1 Tax=Pythium bras... [more]
A0A1C1CQ02_9EURO1.170e-539.13PPM-type phosphatase domain-containing protein n=1... [more]
A0A6A5TRE2_9PLEO1.930e-550.94PP2C-domain-containing protein n=1 Tax=Byssotheciu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1180contigE-siliculosus-1a_F_contig1180:27066..27719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size222
Model size222
Exons2
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927700.106473-CDS-E-siliculosus-1a_F_contig1180:27065..271721622927700.106473-CDS-E-siliculosus-1a_F_contig1180:27065..27172Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 27066..27172 -
1696318643.8982391-CDS-E-siliculosus-1a_F_contig1180:27065..271721696318643.8982391-CDS-E-siliculosus-1a_F_contig1180:27065..27172Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 27066..27172 -
1622927700.1200912-CDS-E-siliculosus-1a_F_contig1180:27604..277191622927700.1200912-CDS-E-siliculosus-1a_F_contig1180:27604..27719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 27605..27719 -
1696318643.9068696-CDS-E-siliculosus-1a_F_contig1180:27604..277191696318643.9068696-CDS-E-siliculosus-1a_F_contig1180:27604..27719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 27605..27719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1180.1167.1prot_E-siliculosus-1a_F_contig1180.1167.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1180 27066..27719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1180.1167.1

>prot_E-siliculosus-1a_F_contig1180.1167.1 ID=prot_E-siliculosus-1a_F_contig1180.1167.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1167.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=74bp
AVAVYAAVRGVLRGVRRPRRGCRRGGPAEGAAQAHRQAEVIHGQHLRRHR
ARVLRDGHRVSRRSVPGAGARKV*
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mRNA from alignment at E-siliculosus-1a_F_contig1180:27066..27719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1180.1167.1 ID=mRNA_E-siliculosus-1a_F_contig1180.1167.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1167.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1180:27066..27719- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGTCGCCGTCTACGCCGCTGTGCGCGGCGTTCTTCGGGGTGTACGACG GCCACGACGGGGATGTCGTCGCGGAGGCCCTGCAGAAGGGGCTGCACAAG CTCATCGCCAAGCAGGTGGGGTGCGCGCGTGCGTAGTGTAGCGTATGCGT AGGGTTTCGTAGGTGGTCGCCTCATCAGTGAGGGCATCGCACCGCAAGAA AGCCCCCCCCTTCCCTGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACG ACCACGGCTCTAAGTACACACACACCGCCAGACAATCAACCCATGGCATA TCTGGTTTGGCACAGCAAATGCAAGGATGATGACCAGCTTCCGGTTCATC GTTCCTTGTGAAGAGTAGCCTAAGCCGGCGAAAAAACGGCTTATCGCTCC GCACCGGTGTTGTAGGGATGAGAGGTCAATGGTCTAATGACTACGGCATG CTTTTACGTGAGTACCCCCCCCCCCTTCATCACAAATCACTCGGCTATTG ATTCTCATGTTCTCCAACCGACCCCCCCCCCCAAACCGAAAAAATAGAAG TGATTCACGGACAACATCTCCGCCGCCATCGAGCACGGGTGCTACGAGAT GGACATCGCGTGTCTCGACGCTCAGTTCCGGGTGCTGGGGCGCGAAAGGT CTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1180:27066..27719-

>mRNA_E-siliculosus-1a_F_contig1180.1167.1 ID=mRNA_E-siliculosus-1a_F_contig1180.1167.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1167.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1180:27066..27719- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGTCGCCGTCTACGCCGCTGTGCGCGGCGTTCTTCGGGGTGTACGACG
GCCACGACGGGGATGTCGTCGCGGAGGCCCTGCAGAAGGGGCTGCACAAG
CTCATCGCCAAGCAGGCCGTCGCCGTCTACGCCGCTGTGCGCGGCGTTCT
TCGGGGTGTACGACGGCCACGACGGGGATGTCGTCGCGGAGGCCCTGCAG
AAGGGGCTGCACAAGCTCATCGCCAAGCAGAAGTGATTCACGGACAACAT
CTCCGCCGCCATCGAGCACGGGTGCTACGAGATGGACATCGCGTGTCTCG
ACGCTCAGTTCCGGGTGCTGGGGCGCGAAAGGTCTAGAAGTGATTCACGG
ACAACATCTCCGCCGCCATCGAGCACGGGTGCTACGAGATGGACATCGCG
TGTCTCGACGCTCAGTTCCGGGTGCTGGGGCGCGAAAGGTCTAG
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