mRNA_E-siliculosus-1a_F_contig1180.1166.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1180.1166.1
Unique NamemRNA_E-siliculosus-1a_F_contig1180.1166.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.220e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFKEYPPPPPDGDMWRG 222
            VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFKEYPPPPPDGDMWRG
Sbjct: 1059 VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFKEYPPPPPDGDMWRG 1132
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 3.230e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFKEYPPPPPDGDMWRG 222
            VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFKEYPPPPPDGDMWRG
Sbjct: 2115 VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFKEYPPPPPDGDMWRG 2188
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: UPI000C1D174A (probable protein phosphatase 2C 49 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D174A)

HSP 1 Score: 84.7 bits (208), Expect = 8.770e-18
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    4 GDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFK 180
            GDCRAVLCR+G AID++ DHRP+   ER RV+E GG+I RD LNG+L VTRA GD   K
Sbjct:  168 GDCRAVLCRKGEAIDMSQDHRPNYASERKRVEELGGFIDRDYLNGVLAVTRALGDWDMK 226
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: A0A835YK53_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK53_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.100e-18
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFKEYPP 192
            VGDCR V+ R G A+ LTSDH+P+R DE  RV+ AGGY+SR  +NG+L VTR+FGDI  K +PP
Sbjct:  232 VGDCRCVVGRGGRAVALTSDHKPARKDEAQRVEAAGGYVSRGCVNGVLRVTRSFGDIHCKVFPP 295
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: A0A7C9EMU0_OPUST (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EMU0_OPUST)

HSP 1 Score: 79.3 bits (194), Expect = 1.270e-17
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 GDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFK 180
            GDCRAVLCR+G AID++ DHRP+   E+ RV+E GG+I    LNG+L VTRA GD   K
Sbjct:   32 GDCRAVLCRKGEAIDMSEDHRPTHPSEKRRVEELGGFIDDGYLNGVLSVTRALGDWDLK 90
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: A0A5B6YIR9_DAVIN (Putative Phosphatase 2C 49 n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YIR9_DAVIN)

HSP 1 Score: 80.5 bits (197), Expect = 1.990e-17
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 GDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFK 180
            GDCRAVLCR+G AID++ DHRP    ER RV+E GGYI    LNG+L VTRA GD   K
Sbjct:   92 GDCRAVLCRKGEAIDMSQDHRPKYASERRRVEELGGYIDDGYLNGVLSVTRALGDWDMK 150
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: A0A6A6MG04_HEVBR (Protein-serine/threonine phosphatase n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MG04_HEVBR)

HSP 1 Score: 83.2 bits (204), Expect = 2.600e-17
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    4 GDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFK 180
            GDCRAVLCR+GVA+D++ DHRPS   ER RV+E GGYI  + LNG L VTRA GD   K
Sbjct:  147 GDCRAVLCRKGVAVDMSQDHRPSNLPERKRVEELGGYIEDEYLNGYLSVTRALGDWDLK 205
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: Q4DGJ6_TRYCC (Protein phosphatase 2C, putative n=7 Tax=Trypanosoma cruzi TaxID=5693 RepID=Q4DGJ6_TRYCC)

HSP 1 Score: 83.2 bits (204), Expect = 2.830e-17
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFKEYPPPP 198
            VGD RAVLCR G AI L+ DH+P+   ER RV  AGGYI   R+NG+L ++RAFGD AFK+   PP
Sbjct:  163 VGDSRAVLCRDGTAIPLSEDHKPNLPRERERVLRAGGYIHNGRVNGVLSLSRAFGDFAFKDSDLPP 228
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BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: UPI0007EF5E8D (probable protein phosphatase 2C 49 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF5E8D)

HSP 1 Score: 80.5 bits (197), Expect = 3.670e-17
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 GDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFK 180
            GDCRAVLCR+G AID++ DHRPS   ER RV+E GG+I    LNG+L VTRA GD   K
Sbjct:   10 GDCRAVLCRKGEAIDMSQDHRPSYASERKRVEELGGFIDDGYLNGVLSVTRALGDWDLK 68
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Match: A0A7C9EZJ3_OPUST (PPM-type phosphatase domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EZJ3_OPUST)

HSP 1 Score: 80.5 bits (197), Expect = 5.250e-17
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 GDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGVTRAFGDIAFK 180
            GDCRAVLCR+G AID++ DHRP+   ER RV+E GG+I    LNG+L VTRA GD   K
Sbjct:   32 GDCRAVLCRKGEAIDMSEDHRPTHPSERRRVEELGGFIDDGYLNGVLSVTRALGDWDLK 90
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1180.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L844_9PHAE3.220e-44100.00PPM-type phosphatase domain-containing protein n=1... [more]
D8LIK7_ECTSI3.230e-44100.00cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
UPI000C1D174A8.770e-1864.41probable protein phosphatase 2C 49 n=1 Tax=Olea eu... [more]
A0A835YK53_9STRA9.100e-1860.94Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A7C9EMU0_OPUST1.270e-1759.32PPM-type phosphatase domain-containing protein (Fr... [more]
A0A5B6YIR9_DAVIN1.990e-1762.71Putative Phosphatase 2C 49 n=1 Tax=Davidia involuc... [more]
A0A6A6MG04_HEVBR2.600e-1764.41Protein-serine/threonine phosphatase n=2 Tax=Hevea... [more]
Q4DGJ6_TRYCC2.830e-1759.09Protein phosphatase 2C, putative n=7 Tax=Trypanoso... [more]
UPI0007EF5E8D3.670e-1762.71probable protein phosphatase 2C 49 n=1 Tax=Daucus ... [more]
A0A7C9EZJ3_OPUST5.250e-1761.02PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1180contigE-siliculosus-1a_F_contig1180:25221..26096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size222
Model size222
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.T
EC2.7.11.17,3.1.3.16
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EggNOG free text desc.peptidyl-threonine phosphorylation
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
Preferred namespnA
Seed eggNOG ortholog2880.D8LIK7
Seed ortholog evalue1.6e-37
Seed ortholog score161.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927700.6701245-CDS-E-siliculosus-1a_F_contig1180:25220..253331622927700.6701245-CDS-E-siliculosus-1a_F_contig1180:25220..25333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 25221..25333 -
1696318644.170645-CDS-E-siliculosus-1a_F_contig1180:25220..253331696318644.170645-CDS-E-siliculosus-1a_F_contig1180:25220..25333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 25221..25333 -
1622927700.6836474-CDS-E-siliculosus-1a_F_contig1180:25987..260961622927700.6836474-CDS-E-siliculosus-1a_F_contig1180:25987..26096Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 25988..26096 -
1696318644.183309-CDS-E-siliculosus-1a_F_contig1180:25987..260961696318644.183309-CDS-E-siliculosus-1a_F_contig1180:25987..26096Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1180 25988..26096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1180.1166.1prot_E-siliculosus-1a_F_contig1180.1166.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1180 25221..26096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1180.1166.1

>prot_E-siliculosus-1a_F_contig1180.1166.1 ID=prot_E-siliculosus-1a_F_contig1180.1166.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1166.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=74bp
VGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGILGV
TRAFGDIAFKEYPPPPPDGDMWRG
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mRNA from alignment at E-siliculosus-1a_F_contig1180:25221..26096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1180.1166.1 ID=mRNA_E-siliculosus-1a_F_contig1180.1166.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1166.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1180:25221..26096- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGGCGACTGCCGAGCGGTCTTATGCCGAAGGGGCGTGGCTATCGACCT
GACCTCCGACCACCGCCCTTCGAGAGACGACGAGAGGGCGAGGGTTAAGG
AAGCGGGCGGTGAGAGCATGTTCAGCTTTTTTCTTTTTTTCTTTTTTTTC
TTCTTTTTTTCTTTTAGGTGGGCGCCCTTCGGCAGACAGGATGATGAGAC
GTTTAATCCACCACAAAGCCTCTGTCCATGCCTGTGCTGCTGTATCGATT
AGGGCGTTGGTAATTGTCTCGATTTATGTACCTGCTGCCAGAAACCATGT
TCTCCTTATAATTGAAAGGCCATGCGACTGTTTAATTTTTTTTTCTTTTG
CGTGGAGTTGGTGTTGTTGTGGGGATTCCCGAGTTTTTCGGGAGGGGAAG
AATAAGTGAACGGACGGTAATCTTGAGTCAGCTTCTGGTCATTCTCGTGG
TGGCGGCCATCGTGACCATCGTTGCTGTCGGTTAGGCCTAATACCCGTGC
ACGCCTGGAGAAGCACTTTTGGTGTGCGCTGAACACGAATGCAAGACGTA
GTTTCGCGAGCAGCTTCGAACCGGTGTTGGCCGAAAGTAAAGCAAGGATT
TGTTAGATACATACTGCAGCAGTGTGGAGTGTGCTCTACAACGGCCCCAA
GCAGTGTTTGGAATTTCCTGGCATGATGCCTGTACACCATAACCGCGTGT
TGACTTTACTTTGTGTCTCTTCGTGCGGCGTCTGTTCATCTGCCTCCTGC
TCTTCGTTTGTAGGGTACATCTCGCGTGACCGGCTTAACGGTATCCTAGG
AGTGACCCGCGCGTTCGGGGACATCGCGTTCAAGGAGTACCCACCGCCCC
CTCCGGACGGCGACATGTGGCGAGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1180:25221..26096-

>mRNA_E-siliculosus-1a_F_contig1180.1166.1 ID=mRNA_E-siliculosus-1a_F_contig1180.1166.1|Name=mRNA_E-siliculosus-1a_F_contig1180.1166.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1180:25221..26096- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGGCGACTGCCGAGCGGTCTTATGCCGAAGGGGCGTGGCTATCGACCT
GACCTCCGACCACCGCCCTTCGAGAGACGACGAGAGGGCGAGGGTTAAGG
AAGCGGGCGGTCGGCGACTGCCGAGCGGTCTTATGCCGAAGGGGCGTGGC
TATCGACCTGACCTCCGACCACCGCCCTTCGAGAGACGACGAGAGGGCGA
GGGTTAAGGAAGCGGGCGGGTACATCTCGCGTGACCGGCTTAACGGTATC
CTAGGAGTGACCCGCGCGTTCGGGGACATCGCGTTCAAGGAGTACCCACC
GCCCCCTCCGGACGGCGACATGTGGCGAGGGGGTACATCTCGCGTGACCG
GCTTAACGGTATCCTAGGAGTGACCCGCGCGTTCGGGGACATCGCGTTCA
AGGAGTACCCACCGCCCCCTCCGGACGGCGACATGTGGCGAGGG
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