mRNA_E-siliculosus-1a_F_contig118.1162.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A6H5KAY1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAY1_9PHAE) HSP 1 Score: 537 bits (1384), Expect = 1.990e-186 Identity = 282/303 (93.07%), Postives = 283/303 (93.40%), Query Frame = 2
Query: 17 MTRRMVARRRSLSGPRLSGVGEGAVAILCLLMCFATREALASGASSRGRAGGTSTAGGSGGRISGNSKDAGGGAFSFVSGTVPKVTLDETVDSEEQDIREEQRRGRWSFGQDHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
M RRMVARRRSLSGPRLSG GEGAVAILCLL+CFA REALASGAS RGRAGGTSTAG GG FSFVSGTVPKVTLDETVDSEEQDIREEQRRGRWSFG DHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY
Sbjct: 1 MARRMVARRRSLSGPRLSGAGEGAVAILCLLVCFAAREALASGAS-RGRAGGTSTAGXXXXXXXXXXXXXXGGGFSFVSGTVPKVTLDETVDSEEQDIREEQRRGRWSFGHDHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 302
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A835Z0G9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G9_9STRA) HSP 1 Score: 346 bits (888), Expect = 2.780e-112 Identity = 161/223 (72.20%), Postives = 202/223 (90.58%), Query Frame = 2
Query: 260 VPKVTLDET-VDSEEQDIREEQRRGRWSFGQDHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
VPKVT+DET V+S+++D R+ QR+GRW+F D DPVVS I+S+KDLFP+V +S +PTT+LKLRK PLKTV+TLGADYNT IG+WQFRS+WEDSIIGGRIS+AGRE+ML+KSWL+KVMDSEDVATRLKF+AA+NT+DWTAYAKFG RTERI+PLN+++GF L ++ PLDGN GHAKLEV+++++LPEPEL+FST+GDTS GVV GMGD+++GI+E NLLLEY
Sbjct: 33 VPKVTVDETAVESDDEDHRDAQRKGRWTFVDDADPVVSVIKSVKDLFPHVSLSCEPTTTLKLRKIFTPLKTVVTLGADYNTNIGIWQFRSSWEDSIIGGRISVAGRELMLSKSWLIKVMDSEDVATRLKFKAAVNTKDWTAYAKFGLRTERIAPLNVREGFTLCRRLPLDGNRGHAKLEVLARVSLPEPELRFSTDGDTSHGVVAGMGDIHIGIDELNLLLEY 255
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A4D9CS25_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS25_9STRA) HSP 1 Score: 235 bits (600), Expect = 5.770e-69 Identity = 107/179 (59.78%), Postives = 139/179 (77.65%), Query Frame = 2
Query: 389 DLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
DL P RV ++P T+LKLRKR YP KTV+ LGADYNTQIGVWQF+S+WED IIGGR+++ GRE+ +K+WL+ + D +D+ATRLKFRA I+T W +YA+ GFRTERI PLN+KDG L ++ PLDG GHAKLEV + L LPEPE+++ST+ K +++G GD+ L I+E NL LEY
Sbjct: 115 DLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTD---KKRLIMGTGDILLSIDELNLCLEY 290
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A7S1BGQ1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGQ1_9STRA) HSP 1 Score: 232 bits (592), Expect = 4.310e-68 Identity = 107/184 (58.15%), Postives = 143/184 (77.72%), Query Frame = 2
Query: 374 IQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
I +D FP ++V DP T+LKLRKR PLKTVLTLGAD+ TQ+GVWQF+S+WEDS+IGGR+++ GRE+ ++K+WLL V ED+ TRL+ RAA++ AYA+FGFRTER+SP+N+ +GF L K FPLDG+NGHAK+EV + A PEPE+++ST+ S ++GMGDV + IEE NL+LEY
Sbjct: 88 IDGHRDKFPGLKVRTDPRTTLKLRKRFRPLKTVLTLGADFETQLGVWQFKSSWEDSLIGGRLTLNGRELQMSKTWLLSVGAVEDLVTRLRLRAAVDLATGKAYARFGFRTERLSPINVVEGFTLKKMFPLDGSNGHAKMEVRANFAFPEPEIEYSTDNKKS---LVGMGDVEVAIEELNLVLEY 268
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: W7U3J5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3J5_9STRA) HSP 1 Score: 235 bits (600), Expect = 4.270e-67 Identity = 107/179 (59.78%), Postives = 139/179 (77.65%), Query Frame = 2
Query: 389 DLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
DL P RV ++P T+LKLRKR YP KTV+ LGADYNTQIGVWQF+S+WED IIGGR+++ GRE+ +K+WL+ + D +D+ATRLKFRA I+T W +YA+ GFRTERI PLN+KDG L ++ PLDG GHAKLEV + L LPEPE+++ST+ K +++G GD+ L I+E NL LEY
Sbjct: 264 DLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTD---KKRLIMGTGDILLSIDELNLCLEY 439
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: B7G885_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G885_PHATC) HSP 1 Score: 228 bits (580), Expect = 2.690e-65 Identity = 102/177 (57.63%), Postives = 141/177 (79.66%), Query Frame = 2
Query: 395 FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
+P ++ ++PTT+LK+RK PLKTV+ LGAD+NTQ+GVWQFRS+WED+IIGG++++AGRE+ L+KSW L V ED+ TRL+FRAA++ + W AYA+ GFRTER+SP+N+ +GF L K+ PLDGN+GH KLEV + ALPEPE+++ST S +IGMGD+ + IEE NL+L+Y
Sbjct: 174 WPKIQCRVEPTTTLKIRKTFRPLKTVVQLGADFNTQLGVWQFRSSWEDAIIGGKLTLAGRELQLSKSWQLSVGAVEDLVTRLRFRAAVDLQTWKAYARVGFRTERLSPINVMEGFTLLKQLPLDGNHGHVKLEVKANFALPEPEIEYSTETQRS---LIGMGDIEVNIEELNLVLDY 347
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A7S1GJA6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJA6_CYCTE) HSP 1 Score: 223 bits (569), Expect = 6.460e-65 Identity = 102/203 (50.25%), Postives = 151/203 (74.38%), Query Frame = 2
Query: 338 SFGQDHDPVVSAIQSMKDL-------FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
+F + P + +QS+++ FP ++ +DPTT+LK++K PLKT++ LGA++NTQ+GVWQF+S+WED+IIGG++++AGRE+ LTKSW L + ED+ TRL+FRAA++ + AYA+ GFRTER+SP+N+ +GF L + PLDG NGH KL V +KLALPEPE+++ST + S ++GMGD+ + +EE NLLL+Y
Sbjct: 55 AFNSKNQPQPTFVQSVQEWWSSNLPNFPKLQCRIDPTTTLKIQKTFRPLKTIVRLGAEFNTQLGVWQFKSSWEDAIIGGKLTLAGRELQLTKSWQLSMGPMEDLVTRLRFRAAVDLQTMKAYARVGFRTERLSPINMMEGFTLQHQIPLDGQNGHIKLGVKAKLALPEPEIEYSTENNRS---LVGMGDIEINVEELNLLLDY 254
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A7S1TRT3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRT3_9STRA) HSP 1 Score: 225 bits (573), Expect = 1.040e-64 Identity = 98/183 (53.55%), Postives = 139/183 (75.96%), Query Frame = 2
Query: 377 QSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
+S D FP VR +P+T+LKLRKR YPLKT LTLGADYNTQ+G+WQF S+WED IIGGR+S GRE+ L+K W+LK+ ++ D+ +L FRAA++T YAKFG+R E++ P+N+++G +K PLDG +GH KLEV +K ALPEP++++S+ D+ +++GMGDV + ++E NLL+EY
Sbjct: 131 RSWLDYFPRVRCHFEPSTTLKLRKRFYPLKTRLTLGADYNTQLGIWQFISSWEDQIIGGRLSFRGRELQLSKKWMLKIDEASDLIAKLTFRAALDTSTGATYAKFGWRFEKLEPINVREGIPWRQKLPLDGPDGHVKLEVRAKFALPEPDIEYSSTKDSEGSMIVGMGDVEVRVQELNLLMEY 313
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A7S2S8R8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S8R8_9STRA) HSP 1 Score: 218 bits (555), Expect = 3.730e-62 Identity = 97/177 (54.80%), Postives = 136/177 (76.84%), Query Frame = 2
Query: 395 FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
FP ++ ++P T+LK+RK PLKTV+ LGAD+NTQ+GVWQF+S+WEDS+IGG++++AGRE+ L+K+WLL V ED+ TRL+FRAA++ AYA+ GFRTER+SP+N+ +GF L K+ PLDG GH KLEV + A PEPE+++ST + S +GMGD+ + I+E NLLL+Y
Sbjct: 135 FPKLQCRVEPNTTLKVRKTFRPLKTVIRLGADFNTQLGVWQFKSSWEDSLIGGKLTLAGREIQLSKTWLLSVGAVEDLVTRLRFRAAVDLGTMKAYARLGFRTERLSPINVVEGFTLMKQLPLDGTQGHVKLEVKANFAFPEPEIEYSTENNRS---FVGMGDIEVNIDELNLLLDY 308
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A1Z5JVG8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVG8_FISSO) HSP 1 Score: 214 bits (546), Expect = 8.300e-61 Identity = 104/209 (49.76%), Postives = 144/209 (68.90%), Query Frame = 2
Query: 332 RWSFGQDHDPVVSAIQSMKDLF-----------PNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
R+S + P S +Q + D + P + ++PTT+LKLRK PL T++ LGA++NTQ+ VWQF+S WED+IIGG++++AGRE+ LTKSW L V ED+ TRL+FRAA++ W AYA+ GFRTER+SP+NI +GF K+ PLDG +GH KL+V + ALPEPE+++ST S +IGMGD+ + IEE NLLL+Y
Sbjct: 106 RYSSSYNRPPKRSLLQPLTDWWSANISPSVKSWPKIVCRVEPTTTLKLRKTFRPLGTIIRLGANFNTQLQVWQFKSDWEDAIIGGKLTLAGRELQLTKSWQLSVGAVEDLVTRLRFRAAVDLSTWKAYARVGFRTERLSPINIMEGFTFQKEVPLDGPSGHVKLQVKANFALPEPEIEYSTETQRS---LIGMGDIQVSIEELNLLLDY 311 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig118.1162.1 >prot_E-siliculosus-1a_F_contig118.1162.1 ID=prot_E-siliculosus-1a_F_contig118.1162.1|Name=mRNA_E-siliculosus-1a_F_contig118.1162.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=304bp MTRRMVARRRSLSGPRLSGVGEGAVAILCLLMCFATREALASGASSRGRAback to top mRNA from alignment at E-siliculosus-1a_F_contig118:70314..73101+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig118.1162.1 ID=mRNA_E-siliculosus-1a_F_contig118.1162.1|Name=mRNA_E-siliculosus-1a_F_contig118.1162.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2788bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:70314..73101+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig118:70314..73101+ >mRNA_E-siliculosus-1a_F_contig118.1162.1 ID=mRNA_E-siliculosus-1a_F_contig118.1162.1|Name=mRNA_E-siliculosus-1a_F_contig118.1162.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1824bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:70314..73101+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |