mRNA_E-siliculosus-1a_F_contig118.1162.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig118.1162.1
Unique NamemRNA_E-siliculosus-1a_F_contig118.1162.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A6H5KAY1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAY1_9PHAE)

HSP 1 Score: 537 bits (1384), Expect = 1.990e-186
Identity = 282/303 (93.07%), Postives = 283/303 (93.40%), Query Frame = 2
Query:   17 MTRRMVARRRSLSGPRLSGVGEGAVAILCLLMCFATREALASGASSRGRAGGTSTAGGSGGRISGNSKDAGGGAFSFVSGTVPKVTLDETVDSEEQDIREEQRRGRWSFGQDHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            M RRMVARRRSLSGPRLSG GEGAVAILCLL+CFA REALASGAS RGRAGGTSTAG              GG FSFVSGTVPKVTLDETVDSEEQDIREEQRRGRWSFG DHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY
Sbjct:    1 MARRMVARRRSLSGPRLSGAGEGAVAILCLLVCFAAREALASGAS-RGRAGGTSTAGXXXXXXXXXXXXXXGGGFSFVSGTVPKVTLDETVDSEEQDIREEQRRGRWSFGHDHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 302          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A835Z0G9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G9_9STRA)

HSP 1 Score: 346 bits (888), Expect = 2.780e-112
Identity = 161/223 (72.20%), Postives = 202/223 (90.58%), Query Frame = 2
Query:  260 VPKVTLDET-VDSEEQDIREEQRRGRWSFGQDHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            VPKVT+DET V+S+++D R+ QR+GRW+F  D DPVVS I+S+KDLFP+V +S +PTT+LKLRK   PLKTV+TLGADYNT IG+WQFRS+WEDSIIGGRIS+AGRE+ML+KSWL+KVMDSEDVATRLKF+AA+NT+DWTAYAKFG RTERI+PLN+++GF L ++ PLDGN GHAKLEV+++++LPEPEL+FST+GDTS GVV GMGD+++GI+E NLLLEY
Sbjct:   33 VPKVTVDETAVESDDEDHRDAQRKGRWTFVDDADPVVSVIKSVKDLFPHVSLSCEPTTTLKLRKIFTPLKTVVTLGADYNTNIGIWQFRSSWEDSIIGGRISVAGRELMLSKSWLIKVMDSEDVATRLKFKAAVNTKDWTAYAKFGLRTERIAPLNVREGFTLCRRLPLDGNRGHAKLEVLARVSLPEPELRFSTDGDTSHGVVAGMGDIHIGIDELNLLLEY 255          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A4D9CS25_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS25_9STRA)

HSP 1 Score: 235 bits (600), Expect = 5.770e-69
Identity = 107/179 (59.78%), Postives = 139/179 (77.65%), Query Frame = 2
Query:  389 DLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            DL P  RV ++P T+LKLRKR YP KTV+ LGADYNTQIGVWQF+S+WED IIGGR+++ GRE+  +K+WL+ + D +D+ATRLKFRA I+T  W +YA+ GFRTERI PLN+KDG  L ++ PLDG  GHAKLEV + L LPEPE+++ST+    K +++G GD+ L I+E NL LEY
Sbjct:  115 DLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTD---KKRLIMGTGDILLSIDELNLCLEY 290          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A7S1BGQ1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGQ1_9STRA)

HSP 1 Score: 232 bits (592), Expect = 4.310e-68
Identity = 107/184 (58.15%), Postives = 143/184 (77.72%), Query Frame = 2
Query:  374 IQSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            I   +D FP ++V  DP T+LKLRKR  PLKTVLTLGAD+ TQ+GVWQF+S+WEDS+IGGR+++ GRE+ ++K+WLL V   ED+ TRL+ RAA++     AYA+FGFRTER+SP+N+ +GF L K FPLDG+NGHAK+EV +  A PEPE+++ST+   S   ++GMGDV + IEE NL+LEY
Sbjct:   88 IDGHRDKFPGLKVRTDPRTTLKLRKRFRPLKTVLTLGADFETQLGVWQFKSSWEDSLIGGRLTLNGRELQMSKTWLLSVGAVEDLVTRLRLRAAVDLATGKAYARFGFRTERLSPINVVEGFTLKKMFPLDGSNGHAKMEVRANFAFPEPEIEYSTDNKKS---LVGMGDVEVAIEELNLVLEY 268          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: W7U3J5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3J5_9STRA)

HSP 1 Score: 235 bits (600), Expect = 4.270e-67
Identity = 107/179 (59.78%), Postives = 139/179 (77.65%), Query Frame = 2
Query:  389 DLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            DL P  RV ++P T+LKLRKR YP KTV+ LGADYNTQIGVWQF+S+WED IIGGR+++ GRE+  +K+WL+ + D +D+ATRLKFRA I+T  W +YA+ GFRTERI PLN+KDG  L ++ PLDG  GHAKLEV + L LPEPE+++ST+    K +++G GD+ L I+E NL LEY
Sbjct:  264 DLIPRFRVKVEPLTTLKLRKRFYPFKTVIELGADYNTQIGVWQFKSSWEDRIIGGRLTVKGRELQFSKTWLVTLGDQDDIATRLKFRAGIDTGTWRSYARLGFRTERIQPLNLKDGVTLRRRLPLDGTEGHAKLEVRANLCLPEPEIEYSTD---KKRLIMGTGDILLSIDELNLCLEY 439          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: B7G885_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G885_PHATC)

HSP 1 Score: 228 bits (580), Expect = 2.690e-65
Identity = 102/177 (57.63%), Postives = 141/177 (79.66%), Query Frame = 2
Query:  395 FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            +P ++  ++PTT+LK+RK   PLKTV+ LGAD+NTQ+GVWQFRS+WED+IIGG++++AGRE+ L+KSW L V   ED+ TRL+FRAA++ + W AYA+ GFRTER+SP+N+ +GF L K+ PLDGN+GH KLEV +  ALPEPE+++ST    S   +IGMGD+ + IEE NL+L+Y
Sbjct:  174 WPKIQCRVEPTTTLKIRKTFRPLKTVVQLGADFNTQLGVWQFRSSWEDAIIGGKLTLAGRELQLSKSWQLSVGAVEDLVTRLRFRAAVDLQTWKAYARVGFRTERLSPINVMEGFTLLKQLPLDGNHGHVKLEVKANFALPEPEIEYSTETQRS---LIGMGDIEVNIEELNLVLDY 347          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A7S1GJA6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJA6_CYCTE)

HSP 1 Score: 223 bits (569), Expect = 6.460e-65
Identity = 102/203 (50.25%), Postives = 151/203 (74.38%), Query Frame = 2
Query:  338 SFGQDHDPVVSAIQSMKDL-------FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            +F   + P  + +QS+++        FP ++  +DPTT+LK++K   PLKT++ LGA++NTQ+GVWQF+S+WED+IIGG++++AGRE+ LTKSW L +   ED+ TRL+FRAA++ +   AYA+ GFRTER+SP+N+ +GF L  + PLDG NGH KL V +KLALPEPE+++ST  + S   ++GMGD+ + +EE NLLL+Y
Sbjct:   55 AFNSKNQPQPTFVQSVQEWWSSNLPNFPKLQCRIDPTTTLKIQKTFRPLKTIVRLGAEFNTQLGVWQFKSSWEDAIIGGKLTLAGRELQLTKSWQLSMGPMEDLVTRLRFRAAVDLQTMKAYARVGFRTERLSPINMMEGFTLQHQIPLDGQNGHIKLGVKAKLALPEPEIEYSTENNRS---LVGMGDIEINVEELNLLLDY 254          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A7S1TRT3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRT3_9STRA)

HSP 1 Score: 225 bits (573), Expect = 1.040e-64
Identity = 98/183 (53.55%), Postives = 139/183 (75.96%), Query Frame = 2
Query:  377 QSMKDLFPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            +S  D FP VR   +P+T+LKLRKR YPLKT LTLGADYNTQ+G+WQF S+WED IIGGR+S  GRE+ L+K W+LK+ ++ D+  +L FRAA++T     YAKFG+R E++ P+N+++G    +K PLDG +GH KLEV +K ALPEP++++S+  D+   +++GMGDV + ++E NLL+EY
Sbjct:  131 RSWLDYFPRVRCHFEPSTTLKLRKRFYPLKTRLTLGADYNTQLGIWQFISSWEDQIIGGRLSFRGRELQLSKKWMLKIDEASDLIAKLTFRAALDTSTGATYAKFGWRFEKLEPINVREGIPWRQKLPLDGPDGHVKLEVRAKFALPEPDIEYSSTKDSEGSMIVGMGDVEVRVQELNLLMEY 313          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A7S2S8R8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S8R8_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.730e-62
Identity = 97/177 (54.80%), Postives = 136/177 (76.84%), Query Frame = 2
Query:  395 FPNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            FP ++  ++P T+LK+RK   PLKTV+ LGAD+NTQ+GVWQF+S+WEDS+IGG++++AGRE+ L+K+WLL V   ED+ TRL+FRAA++     AYA+ GFRTER+SP+N+ +GF L K+ PLDG  GH KLEV +  A PEPE+++ST  + S    +GMGD+ + I+E NLLL+Y
Sbjct:  135 FPKLQCRVEPNTTLKVRKTFRPLKTVIRLGADFNTQLGVWQFKSSWEDSLIGGKLTLAGREIQLSKTWLLSVGAVEDLVTRLRFRAAVDLGTMKAYARLGFRTERLSPINVVEGFTLMKQLPLDGTQGHVKLEVKANFAFPEPEIEYSTENNRS---FVGMGDIEVNIDELNLLLDY 308          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Match: A0A1Z5JVG8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVG8_FISSO)

HSP 1 Score: 214 bits (546), Expect = 8.300e-61
Identity = 104/209 (49.76%), Postives = 144/209 (68.90%), Query Frame = 2
Query:  332 RWSFGQDHDPVVSAIQSMKDLF-----------PNVRVSMDPTTSLKLRKRIYPLKTVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMDSEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLDGNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLLLEY 925
            R+S   +  P  S +Q + D +           P +   ++PTT+LKLRK   PL T++ LGA++NTQ+ VWQF+S WED+IIGG++++AGRE+ LTKSW L V   ED+ TRL+FRAA++   W AYA+ GFRTER+SP+NI +GF   K+ PLDG +GH KL+V +  ALPEPE+++ST    S   +IGMGD+ + IEE NLLL+Y
Sbjct:  106 RYSSSYNRPPKRSLLQPLTDWWSANISPSVKSWPKIVCRVEPTTTLKLRKTFRPLGTIIRLGANFNTQLQVWQFKSDWEDAIIGGKLTLAGRELQLTKSWQLSVGAVEDLVTRLRFRAAVDLSTWKAYARVGFRTERLSPINIMEGFTFQKEVPLDGPSGHVKLQVKANFALPEPEIEYSTETQRS---LIGMGDIQVSIEELNLLLDY 311          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig118.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAY1_9PHAE1.990e-18693.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0G9_9STRA2.780e-11272.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CS25_9STRA5.770e-6959.78Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1BGQ1_9STRA4.310e-6858.15Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
W7U3J5_9STRA4.270e-6759.78Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
B7G885_PHATC2.690e-6557.63Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1GJA6_CYCTE6.460e-6550.25Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1TRT3_9STRA1.040e-6453.55Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S8R8_9STRA3.730e-6254.80Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5JVG8_FISSO8.300e-6149.76Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig118contigE-siliculosus-1a_F_contig118:70314..73101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size912
Model size1937
Exons3
Ec32 orthologEc-17_001630.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2DZIP@1,2S72C@2759
Seed eggNOG ortholog2880.D7FKW6
Seed ortholog evalue1.2e-147
Seed ortholog score529.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig118.1162.1prot_E-siliculosus-1a_F_contig118.1162.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig118 70330..72092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.9725447-UTR-E-siliculosus-1a_F_contig118:70313..703291622927699.9725447-UTR-E-siliculosus-1a_F_contig118:70313..70329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 70314..70329 +
1696318643.8210514-UTR-E-siliculosus-1a_F_contig118:70313..703291696318643.8210514-UTR-E-siliculosus-1a_F_contig118:70313..70329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 70314..70329 +
1622927700.0192444-UTR-E-siliculosus-1a_F_contig118:72092..731011622927700.0192444-UTR-E-siliculosus-1a_F_contig118:72092..73101Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 72093..73101 +
1696318643.8799326-UTR-E-siliculosus-1a_F_contig118:72092..731011696318643.8799326-UTR-E-siliculosus-1a_F_contig118:72092..73101Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 72093..73101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.9865816-CDS-E-siliculosus-1a_F_contig118:70329..704981622927699.9865816-CDS-E-siliculosus-1a_F_contig118:70329..70498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 70330..70498 +
1696318643.845221-CDS-E-siliculosus-1a_F_contig118:70329..704981696318643.845221-CDS-E-siliculosus-1a_F_contig118:70329..70498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 70330..70498 +
1622927699.9978282-CDS-E-siliculosus-1a_F_contig118:70780..713711622927699.9978282-CDS-E-siliculosus-1a_F_contig118:70780..71371Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 70781..71371 +
1696318643.8620403-CDS-E-siliculosus-1a_F_contig118:70780..713711696318643.8620403-CDS-E-siliculosus-1a_F_contig118:70780..71371Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 70781..71371 +
1622927700.0084152-CDS-E-siliculosus-1a_F_contig118:71940..720921622927700.0084152-CDS-E-siliculosus-1a_F_contig118:71940..72092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 71941..72092 +
1696318643.8705146-CDS-E-siliculosus-1a_F_contig118:71940..720921696318643.8705146-CDS-E-siliculosus-1a_F_contig118:71940..72092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 71941..72092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig118.1162.1

>prot_E-siliculosus-1a_F_contig118.1162.1 ID=prot_E-siliculosus-1a_F_contig118.1162.1|Name=mRNA_E-siliculosus-1a_F_contig118.1162.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=304bp
MTRRMVARRRSLSGPRLSGVGEGAVAILCLLMCFATREALASGASSRGRA
GGTSTAGGSGGRISGNSKDAGGGAFSFVSGTVPKVTLDETVDSEEQDIRE
EQRRGRWSFGQDHDPVVSAIQSMKDLFPNVRVSMDPTTSLKLRKRIYPLK
TVLTLGADYNTQIGVWQFRSTWEDSIIGGRISIAGREVMLTKSWLLKVMD
SEDVATRLKFRAAINTRDWTAYAKFGFRTERISPLNIKDGFQLAKKFPLD
GNNGHAKLEVVSKLALPEPELQFSTNGDTSKGVVIGMGDVNLGIEEFNLL
LEY*
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mRNA from alignment at E-siliculosus-1a_F_contig118:70314..73101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig118.1162.1 ID=mRNA_E-siliculosus-1a_F_contig118.1162.1|Name=mRNA_E-siliculosus-1a_F_contig118.1162.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2788bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:70314..73101+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTCCCAGCAAGCATCATGACCCGTAGAATGGTAGCACGACGAAGGTCAT TGTCGGGGCCCAGATTGTCAGGTGTGGGTGAGGGTGCAGTTGCTATCCTG TGTCTACTGATGTGCTTTGCCACAAGAGAGGCGCTGGCTTCAGGAGCTTC TTCCCGAGGGAGGGCAGGGGGCACTTCAACAGCCGGTGCGTGTAGTTGTG TAGCCGGGTGGTATTTCACCCCTCTCAACCGGGTTAACTCATTTTCACGG CGTTGCCTGCACCTCATCGCTGTTTCAAGAATACAACACCAGCCCTGCCC TCGTCTGTATTTTGAATTTGCTTGACATGTAGAAATTTCTCTCGAGAGTA ACCAAGGCAGCAAATATGAGAGCCAAGTGGCAGCAAGAGAGTGTTGCATC AGTTCCGGTGTGTGTCTCATGAAGATATGTGGCACCTTGCTTTGGTCGGC GACTCGAAATGCTGCAGGTGGTTCTGGAGGGCGGATATCAGGGAACAGTA AGGACGCAGGGGGTGGAGCTTTTTCTTTTGTAAGTGGGACCGTACCAAAG GTCACACTGGACGAGACCGTCGACTCCGAGGAGCAGGACATCAGGGAAGA GCAGCGGCGCGGTCGCTGGAGCTTTGGGCAAGATCATGATCCTGTCGTTT CCGCCATCCAAAGCATGAAAGATCTGTTCCCCAATGTGCGTGTCTCAATG GACCCCACGACATCTCTCAAGCTGAGAAAGCGAATCTACCCGTTGAAAAC CGTTCTCACGCTCGGAGCCGATTACAACACCCAAATAGGGGTATGGCAAT TTCGCTCTACATGGGAAGATTCCATCATCGGGGGTAGAATCAGCATCGCA GGACGGGAAGTGATGCTGACGAAATCGTGGTTACTCAAGGTCATGGACTC GGAAGACGTTGCAACGCGGTTAAAGTTCCGAGCAGCCATCAACACACGAG ACTGGACGGCGTACGCCAAATTTGGTTTCCGAACAGAGCGCATATCGCCT CTGAACATCAAGGATGGCTTCCAGCTGGCGAAGAAGTTCCCGCTTGATGG AAATAATGGTGCGTACCACCGCTCCCTGCATTTATAGATGCTCTGCTGAA ACGGGACAAGCTGATCTTGAACAACTGTTTCGAAGTGCATGCAGTGTGTG TGAATACACGTAGTGCCCACGCTTAAGAACCTGTAGTTTTGCCCGAGACT GGGGTTTTTGATGCATTCCTCTTGCGGGCTAGAAACAGCCTTTATATAGG TCTTAGAGTTGGGGTTCTTAACCGGGCTCACAAATGGTGCTAAACTTTTT TGTGTTTGAGGTAGTGTTGAGCATGAAAATCTTGGTTACCAAGTTCTTTC AAGTGCGGGCGCTGTATGCCAAGAACCGCCCGTGTGAGGAGACCACCGGC CTTCGTTGTCTGTTGTACTCAACGACAAGGTGAGCACCTTTTTTTTTCGT CACAGGCCATGCACACTCGCAGCACAATCGAAATGGCAATCTCCCTGCCC AATCGCTCGGAAAACCCCAATATGCATGTTTTCTCCACCTGCCCACTTCG CAGGATAGCACCCAATGGACATTTTTCACCTATAACCATCGTCCTCGACC TTCGTGCAACTGCCTATCTGTTCTTAGGTCATGCCAAACTCGAGGTCGTG TCCAAGCTTGCACTACCGGAGCCGGAGCTCCAGTTTAGTACAAATGGCGA CACAAGCAAGGGGGTTGTGATCGGCATGGGAGATGTAAATCTTGGGATAG AGGAGTTCAACCTGTTGCTCGAGTACTGACGAAGTATTTCGCAGAGCAAG GAGCGTGTGTGACGGTGCGGTGTAAAGTGTCGAAAGATGGGACGGACCTG GCCGTCTGATTAATGTGGTGGTGTGGCAATGAGGAGGCTCGTAGTACTCA ACTCTCCTGGTCAGCAGCATCGGAAGTGGTGTTTTGTCTTTGTCTGGTTT CGGGCTACCGGTGTTGGGGCGGATGCAACACTGACGTATTGTCACGGCGT GCTTTTCAACGCAGTGGTCTAACCAAGGGGTCTCAAGGCACAGAACTACA AAAGTATGCCCGACAGTTCTGTTTCGTCGACATATATATGTACAAGGTCT GCGGAATGAAAACTTTTTAGCAGGCTTCCCCACTGCGAAGACTTCCAACA TATCCCTTCGACTGTGGTATATCTCGAACGGGTAGGTAGTCTTTCAGTGA TTGCATGTGAAATTCTGAGAATCGGAATGGTGTTGCACGGTTCGGTGCGC TACAGTAGCCCGCTATGGCTGGAAAGCGCATATTCAGCCATGAGCGCAGC TGGCCACGGCGCTATGCATTCCGGCATTTGTTGTGCGGGAAGACGTTCAC TGTCTTGGGTATTGACCTTGAGGTCACAACACGTTCTTAGGTGAATGAGG TTAGACCGGGATATGCAGGTCGTGTCGCCTGGAGCATGCTGAGTTTTTTT CTCCGTCCCGCCCAGCATTGCAGTAACGCAAGGGAAAGGTGCGGTAGGAG TACGTGAACTCCCACTGTGATGCTATTTATATCGTAGTTCCTTGGCTTCG TGTAAAACAAACAACAAGACCTTAGCTGTTCAAGGTGCGGTCATTCAGCC CGCTGCTAGCACCGTGTTTCACGTGCGGGGTTGATACAAGTGGACATGCG TAAAAGGCGGAGTGTAGGAAGTCATGAATGAATGTGAACTCGCTTTGTCT CTTGTCCGTCTATCGTAAGGGAAGCCGACGCGCCTTGACGGATATGTATG CTTGCGAAACCCACATTTTTTACGCATGTCGTCTGTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig118:70314..73101+

>mRNA_E-siliculosus-1a_F_contig118.1162.1 ID=mRNA_E-siliculosus-1a_F_contig118.1162.1|Name=mRNA_E-siliculosus-1a_F_contig118.1162.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1824bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:70314..73101+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCCGTAGAATGGTAGCACGACGAAGGTCATTGTCGGGGCCCAGATT
GTCAGGTGTGGGTGAGGGTGCAGTTGCTATCCTGTGTCTACTGATGTGCT
TTGCCACAAGAGAGGCGCTGGCTTCAGGAGCTTCTTCCCGAGGGAGGGCA
GGGGGCACTTCAACAGCCGATGACCCGTAGAATGGTAGCACGACGAAGGT
CATTGTCGGGGCCCAGATTGTCAGGTGTGGGTGAGGGTGCAGTTGCTATC
CTGTGTCTACTGATGTGCTTTGCCACAAGAGAGGCGCTGGCTTCAGGAGC
TTCTTCCCGAGGGAGGGCAGGGGGCACTTCAACAGCCGGTGGTTCTGGAG
GGCGGATATCAGGGAACAGTAAGGACGCAGGGGGTGGAGCTTTTTCTTTT
GTAAGTGGGACCGTACCAAAGGTCACACTGGACGAGACCGTCGACTCCGA
GGAGCAGGACATCAGGGAAGAGCAGCGGCGCGGTCGCTGGAGCTTTGGGC
AAGATCATGATCCTGTCGTTTCCGCCATCCAAAGCATGAAAGATCTGTTC
CCCAATGTGCGTGTCTCAATGGACCCCACGACATCTCTCAAGCTGAGAAA
GCGAATCTACCCGTTGAAAACCGTTCTCACGCTCGGAGCCGATTACAACA
CCCAAATAGGGGTATGGCAATTTCGCTCTACATGGGAAGATTCCATCATC
GGGGGTAGAATCAGCATCGCAGGACGGGAAGTGATGCTGACGAAATCGTG
GTTACTCAAGGTCATGGACTCGGAAGACGTTGCAACGCGGTTAAAGTTCC
GAGCAGCCATCAACACACGAGACTGGACGGCGTACGCCAAATTTGGTTTC
CGAACAGAGCGCATATCGCCTCTGAACATCAAGGATGGCTTCCAGCTGGC
GAAGAAGTTCCCGCTTGATGGAAATAATGGTGGTTCTGGAGGGCGGATAT
CAGGGAACAGTAAGGACGCAGGGGGTGGAGCTTTTTCTTTTGTAAGTGGG
ACCGTACCAAAGGTCACACTGGACGAGACCGTCGACTCCGAGGAGCAGGA
CATCAGGGAAGAGCAGCGGCGCGGTCGCTGGAGCTTTGGGCAAGATCATG
ATCCTGTCGTTTCCGCCATCCAAAGCATGAAAGATCTGTTCCCCAATGTG
CGTGTCTCAATGGACCCCACGACATCTCTCAAGCTGAGAAAGCGAATCTA
CCCGTTGAAAACCGTTCTCACGCTCGGAGCCGATTACAACACCCAAATAG
GGGTATGGCAATTTCGCTCTACATGGGAAGATTCCATCATCGGGGGTAGA
ATCAGCATCGCAGGACGGGAAGTGATGCTGACGAAATCGTGGTTACTCAA
GGTCATGGACTCGGAAGACGTTGCAACGCGGTTAAAGTTCCGAGCAGCCA
TCAACACACGAGACTGGACGGCGTACGCCAAATTTGGTTTCCGAACAGAG
CGCATATCGCCTCTGAACATCAAGGATGGCTTCCAGCTGGCGAAGAAGTT
CCCGCTTGATGGAAATAATGGTCATGCCAAACTCGAGGTCGTGTCCAAGC
TTGCACTACCGGAGCCGGAGCTCCAGTTTAGTACAAATGGCGACACAAGC
AAGGGGGTTGTGATCGGCATGGGAGATGTAAATCTTGGGATAGAGGAGTT
CAACCTGTTGCTCGAGTACTGAGTCATGCCAAACTCGAGGTCGTGTCCAA
GCTTGCACTACCGGAGCCGGAGCTCCAGTTTAGTACAAATGGCGACACAA
GCAAGGGGGTTGTGATCGGCATGGGAGATGTAAATCTTGGGATAGAGGAG
TTCAACCTGTTGCTCGAGTACTGA
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