mRNA_E-siliculosus-1a_F_contig118.1161.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig118.1161.1
Unique NamemRNA_E-siliculosus-1a_F_contig118.1161.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig118.1161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig118contigE-siliculosus-1a_F_contig118:66714..69757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1596
Model size1624
Exons6
Ec32 orthologEc-17_001620.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.850826-UTR-E-siliculosus-1a_F_contig118:66713..667411622927699.850826-UTR-E-siliculosus-1a_F_contig118:66713..66741Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 66714..66741 -
1696318643.755815-UTR-E-siliculosus-1a_F_contig118:66713..667411696318643.755815-UTR-E-siliculosus-1a_F_contig118:66713..66741Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 66714..66741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.8670754-CDS-E-siliculosus-1a_F_contig118:66741..669451622927699.8670754-CDS-E-siliculosus-1a_F_contig118:66741..66945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 66742..66945 -
1696318643.7633126-CDS-E-siliculosus-1a_F_contig118:66741..669451696318643.7633126-CDS-E-siliculosus-1a_F_contig118:66741..66945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 66742..66945 -
1622927699.8796096-CDS-E-siliculosus-1a_F_contig118:67151..675771622927699.8796096-CDS-E-siliculosus-1a_F_contig118:67151..67577Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 67152..67577 -
1696318643.7705104-CDS-E-siliculosus-1a_F_contig118:67151..675771696318643.7705104-CDS-E-siliculosus-1a_F_contig118:67151..67577Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 67152..67577 -
1622927699.8900578-CDS-E-siliculosus-1a_F_contig118:67690..679301622927699.8900578-CDS-E-siliculosus-1a_F_contig118:67690..67930Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 67691..67930 -
1696318643.7776196-CDS-E-siliculosus-1a_F_contig118:67690..679301696318643.7776196-CDS-E-siliculosus-1a_F_contig118:67690..67930Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 67691..67930 -
1622927699.9003782-CDS-E-siliculosus-1a_F_contig118:68213..683601622927699.9003782-CDS-E-siliculosus-1a_F_contig118:68213..68360Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 68214..68360 -
1696318643.7847893-CDS-E-siliculosus-1a_F_contig118:68213..683601696318643.7847893-CDS-E-siliculosus-1a_F_contig118:68213..68360Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 68214..68360 -
1622927699.9123616-CDS-E-siliculosus-1a_F_contig118:68962..691061622927699.9123616-CDS-E-siliculosus-1a_F_contig118:68962..69106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 68963..69106 -
1696318643.7937255-CDS-E-siliculosus-1a_F_contig118:68962..691061696318643.7937255-CDS-E-siliculosus-1a_F_contig118:68962..69106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 68963..69106 -
1622927699.9293153-CDS-E-siliculosus-1a_F_contig118:69322..697571622927699.9293153-CDS-E-siliculosus-1a_F_contig118:69322..69757Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 69323..69757 -
1696318643.8078985-CDS-E-siliculosus-1a_F_contig118:69322..697571696318643.8078985-CDS-E-siliculosus-1a_F_contig118:69322..69757Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 69323..69757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig118.1161.1prot_E-siliculosus-1a_F_contig118.1161.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig118 66742..69757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig118.1161.1

>prot_E-siliculosus-1a_F_contig118.1161.1 ID=prot_E-siliculosus-1a_F_contig118.1161.1|Name=mRNA_E-siliculosus-1a_F_contig118.1161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=532bp
MMRPGSAGIGNPRDHTTDEGNIEQELLLKIGLLAKHHARNVQALNRLRST
TSAPPTTAWEGVAVSQPSGRPNPVQLRRRATPKGDPELKSACPQRHSFSP
PDRVFTRVVDSSSTRKKLEPTMVKPFRGMETHVTAWTRKMRAYEELELQT
KKDEEEAKARDRERLITAINDGREFSGVIARSNEMMARRRQKETEAEEKD
DEARRRHEFKARPLHIADEDWQTIKDRQSLRRKQRIQTRMDLMSSLSYLP
RRMAMHALKRKAAASTTAEFPEKGDSPSETEARTRYKSVPPGEIREVLAR
RQRLWDQQLAAARRKKKPVVPQVLPMEERENVYRQRAKERARREQDKSLQ
EEIRQRPRRKKVPLAATVPVVPRSTNSFSLKTAHVRARLEKEKSDLKRQK
QEELARRTRQQAMSKTISEVMRRVDSQQTRLARRPTAAKARQTARESQER
YHVCLKENRQKLEQATRDAPTLWERHDAEVRKEAAKRIALSTIAERVFGA
GSVKAERENWRGSGVDKIFDEEERALLCCAN*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig118:66714..69757-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig118.1161.1 ID=mRNA_E-siliculosus-1a_F_contig118.1161.1|Name=mRNA_E-siliculosus-1a_F_contig118.1161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:66714..69757- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGCGTCCTGGATCCGCGGGAATAGGAAACCCACGAGACCATACCAC
TGATGAAGGCAACATTGAACAAGAATTACTCCTCAAAATTGGTCTACTTG
CCAAGCATCATGCTAGAAACGTCCAAGCTCTCAACAGGTTAAGGAGCACC
ACCAGCGCACCTCCGACAACGGCATGGGAAGGTGTCGCCGTTTCACAACC
GAGCGGACGCCCCAATCCTGTCCAACTCAGAAGAAGAGCAACACCAAAGG
GCGATCCCGAGCTGAAAAGTGCATGTCCACAACGTCATTCATTCTCGCCA
CCCGACCGCGTCTTCACTAGAGTTGTCGATTCTTCGTCGACCAGGAAGAA
GCTGGAGCCCACAATGGTTAAGCCGTTCCGCGGCATGGAGACTCATGTAA
CCGCCTGGACCAGGAAGATGAGGGCCTATGAGGAGGTGAGCTACTTTCTG
CGGTGAGGAAATTAGGCTCGAGTTGACATGAAGCACCAGAGACGATGTGG
GCTGGGACTGGAACGTTGCCCCTGATGATGCACAACACAACCAACACTCG
ACTGATCCAGTTGACTGTGACCATTGCGTCAGTACAACTCTAATAGGTGA
ATACTGTTCCTCAATCTTTGTCGCCTACGACCTCAAACGATCTACCTATA
GCTTGAACTTCAAACGAAGAAGGATGAGGAGGAAGCGAAAGCCAGAGATC
GCGAGCGCCTCATCACGGCCATCAATGACGGAAGGGAATTTTCCGGCGTC
ATTGCTCGATCAAATGAAATGATGGCGCGACGCCGACAAAAGGAGGTAAG
CCACAAGATCCCGACGTTCCACGGCACCTTTGTGGTGGCGAGCAGTATCC
AGCGTTCATTAACCGTGGGAACATCAGTGGGTTAACACAAGAACCCTCTG
GACCCTCCCAAGTTGTGCTCCACACATTTCCATACAGATGTGTCACAATC
TTTGTTCGGGTTGCTGCGGTGGGCGAGTTGACTACTCTTTCGTTGATGTA
TTGCTGGTGTTTTGAGACCTATTGGCCTTGACGTAGAGTGGTGCTGAGCG
ATGGCAAATGAAAATGCATGTTGTACGTTGTTATGGCGACAATTGAGGTG
CACTTTACGATGCGGTGGGCACGGAAAAATGTTTTGTGCTTTGATGAGGC
AAAGATATCGTTCCCGGACACAAAGGCACGGTCCAGATGCCTTCATAGGA
AGGGGCCATTCATACGAAGAAGTTAGAGAGGCACGTGTGTAGCTTTGTAG
AATTCTCTCCTAAAGTTCTTATTAGTTGCACTCTTGTAGCTGACGTACAT
GGTGACGAAGATGCTGCATTTTTTATCTATTGATGCGAACGAATCCACTG
GGTGTAGCCAGAAAATTTCTCACGGCGGGGCTCGTTTCACGAACCAGACA
GAAGCCGAGGAAAAGGATGACGAAGCAAGGCGAAGGCATGAATTCAAGGC
TCGGCCTCTTCACATCGCCGATGAGGACTGGCAAACAATCAAGGATAGAC
AAAGTTTAAGGCGGAAGCAAAGGATCCAGACGCGGATGGACTTGGTGAGT
GAGACCGTCAGTCTCGTGTGGCACCGTCAGCCCTGCCCCACCATCGTCCC
CTCCTCAGCCGACTAGCGACCGACAAGAAAGCAGTGTGTTTGGGACGAAC
TAGAGTAAAAGGAGTGGAACTACATGACATCTTTCCCCCGATGTGGAACT
GCTGTGAACAGCTTCCCGTCCTAAAAATCGGCACCGGTCCTACGCTTTGT
AGCGCTCCAGCTTTCGGGCAGTTTTTATAGCAAGAATCGTGTCTGCTGCA
ACTCCAACTTTGGTCGAACTTTGGCAGATGTCGTCTCTCTCCTATCTCCC
AAGGCGTATGGCTATGCATGCGCTGAAACGCAAGGCTGCGGCTTCTACCA
CCGCTGAATTTCCTGAGAAGGGGGATAGCCCAAGTGAGACTGAAGCTCGC
ACGAGATATAAATCGGTTCCACCCGGGGAGATCCGAGAAGTGTTGGCGAG
AAGGCAGCGCCTATGGGATCAGCAGCTTGCTGCAGCTAGACGGAAAAAGA
AACCGGTGGTACCTCAGGTGTGTTGTCTCATTCTCTTGTTTATTACCTGG
TCGAGGCTGCACTCGTTGCAGCTCAAACCTCAAATTCCGCCGTTACAACC
CTGTTCAACATTCGCCTGCTGTACCTATAGGTTCTACCCATGGAAGAGAG
GGAAAATGTATACCGACAAAGAGCAAAAGAGCGTGCTCGACGGGAGCAAG
ACAAATCTCTTCAGGAGGAAATCAGACAGCGTCCTCGGAGGAAGAAAGTG
CCTTTAGCAGCTACTGTGCCCGTGGTACCTCGCAGCACAAACAGCTTCTC
TCTTAAGACGGCACACGTACGGGCCAGACTAGAGAAAGAGAAGAGCGATC
TCAAACGACAAAAACAGGAGGAGTTGGCGAGGCGTACCAGGCAGCAAGCA
ATGAGCAAGACTATCTCTGAAGTAATGAGGCGGGTGGATTCTCAGCAAAC
GAGACTAGCTCGTCGACCGACAGCCGCCAAGGCTCGTCAAACGGCCCGGG
AATCTCAAGAAAGATATCATGTCTGTCTGAAAGAGAACAGGCAAAAGCTG
GAACAGGTGCGTGCTGATGGGCCGGCAGTGTCGCGTAAGGACTGCAGGTT
GTGCCGAGCTTGCTTTCTTCGAGTACACGCTGGGGGTTTACGACAACACA
AAACTCAGTGCGGACTAAAACAACATGGTCGGCTGTAGATGAGGAAATGT
GCACCAACGAGAACTTCACACCACAACAACCTGGTATGCACCGTCCATAC
TTCGCTGCGCAGGCCACTCGCGATGCCCCTACACTGTGGGAGAGGCACGA
TGCTGAGGTTCGCAAGGAGGCAGCAAAACGTATCGCGTTGTCGACTATCG
CAGAAAGAGTATTCGGAGCCGGATCGGTGAAGGCGGAGCGTGAAAACTGG
AGGGGGTCTGGTGTTGACAAAATTTTTGATGAAGAAGAGCGTGCACTGTT
GTGTTGTGCGAATTAGTTCGTCGTTAGTCAAAAAGCCACCTTGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig118:66714..69757-

>mRNA_E-siliculosus-1a_F_contig118.1161.1 ID=mRNA_E-siliculosus-1a_F_contig118.1161.1|Name=mRNA_E-siliculosus-1a_F_contig118.1161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3192bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:66714..69757- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGCGTCCTGGATCCGCGGGAATAGGAAACCCACGAGACCATACCAC
TGATGAAGGCAACATTGAACAAGAATTACTCCTCAAAATTGGTCTACTTG
CCAAGCATCATGCTAGAAACGTCCAAGCTCTCAACAGGTTAAGGAGCACC
ACCAGCGCACCTCCGACAACGGCATGGGAAGGTGTCGCCGTTTCACAACC
GAGCGGACGCCCCAATCCTGTCCAACTCAGAAGAAGAGCAACACCAAAGG
GCGATCCCGAGCTGAAAAGTGCATGTCCACAACGTCATTCATTCTCGCCA
CCCGACCGCGTCTTCACTAGAGTTGTCGATTCTTCGTCGACCAGGAAGAA
GCTGGAGCCCACAATGGTTAAGCCGTTCCGCGGCATGGAGACTCATGTAA
CCGCCTGGACCAGGAAGATGAGGGCCTATGAGGAGATGATGCGTCCTGGA
TCCGCGGGAATAGGAAACCCACGAGACCATACCACTGATGAAGGCAACAT
TGAACAAGAATTACTCCTCAAAATTGGTCTACTTGCCAAGCATCATGCTA
GAAACGTCCAAGCTCTCAACAGGTTAAGGAGCACCACCAGCGCACCTCCG
ACAACGGCATGGGAAGGTGTCGCCGTTTCACAACCGAGCGGACGCCCCAA
TCCTGTCCAACTCAGAAGAAGAGCAACACCAAAGGGCGATCCCGAGCTGA
AAAGTGCATGTCCACAACGTCATTCATTCTCGCCACCCGACCGCGTCTTC
ACTAGAGTTGTCGATTCTTCGTCGACCAGGAAGAAGCTGGAGCCCACAAT
GGTTAAGCCGTTCCGCGGCATGGAGACTCATGTAACCGCCTGGACCAGGA
AGATGAGGGCCTATGAGGAGCTTGAACTTCAAACGAAGAAGGATGAGGAG
GAAGCGAAAGCCAGAGATCGCGAGCGCCTCATCACGGCCATCAATGACGG
AAGGGAATTTTCCGGCGTCATTGCTCGATCAAATGAAATGATGGCGCGAC
GCCGACAAAAGGAGCTTGAACTTCAAACGAAGAAGGATGAGGAGGAAGCG
AAAGCCAGAGATCGCGAGCGCCTCATCACGGCCATCAATGACGGAAGGGA
ATTTTCCGGCGTCATTGCTCGATCAAATGAAATGATGGCGCGACGCCGAC
AAAAGGAGACAGAAGCCGAGGAAAAGGATGACGAAGCAAGGCGAAGGCAT
GAATTCAAGGCTCGGCCTCTTCACATCGCCGATGAGGACTGGCAAACAAT
CAAGGATAGACAAAGTTTAAGGCGGAAGCAAAGGATCCAGACGCGGATGG
ACTTGACAGAAGCCGAGGAAAAGGATGACGAAGCAAGGCGAAGGCATGAA
TTCAAGGCTCGGCCTCTTCACATCGCCGATGAGGACTGGCAAACAATCAA
GGATAGACAAAGTTTAAGGCGGAAGCAAAGGATCCAGACGCGGATGGACT
TGATGTCGTCTCTCTCCTATCTCCCAAGGCGTATGGCTATGCATGCGCTG
AAACGCAAGGCTGCGGCTTCTACCACCGCTGAATTTCCTGAGAAGGGGGA
TAGCCCAAGTGAGACTGAAGCTCGCACGAGATATAAATCGGTTCCACCCG
GGGAGATCCGAGAAGTGTTGGCGAGAAGGCAGCGCCTATGGGATCAGCAG
CTTGCTGCAGCTAGACGGAAAAAGAAACCGGTGGTACCTCAGATGTCGTC
TCTCTCCTATCTCCCAAGGCGTATGGCTATGCATGCGCTGAAACGCAAGG
CTGCGGCTTCTACCACCGCTGAATTTCCTGAGAAGGGGGATAGCCCAAGT
GAGACTGAAGCTCGCACGAGATATAAATCGGTTCCACCCGGGGAGATCCG
AGAAGTGTTGGCGAGAAGGCAGCGCCTATGGGATCAGCAGCTTGCTGCAG
CTAGACGGAAAAAGAAACCGGTGGTACCTCAGGTTCTACCCATGGAAGAG
AGGGAAAATGTATACCGACAAAGAGCAAAAGAGCGTGCTCGACGGGAGCA
AGACAAATCTCTTCAGGAGGAAATCAGACAGCGTCCTCGGAGGAAGAAAG
TGCCTTTAGCAGCTACTGTGCCCGTGGTACCTCGCAGCACAAACAGCTTC
TCTCTTAAGACGGCACACGTACGGGCCAGACTAGAGAAAGAGAAGAGCGA
TCTCAAACGACAAAAACAGGAGGAGTTGGCGAGGCGTACCAGGCAGCAAG
CAATGAGCAAGACTATCTCTGAAGTAATGAGGCGGGTGGATTCTCAGCAA
ACGAGACTAGCTCGTCGACCGACAGCCGCCAAGGCTCGTCAAACGGCCCG
GGAATCTCAAGAAAGATATCATGTCTGTCTGAAAGAGAACAGGCAAAAGC
TGGAACAGGTTCTACCCATGGAAGAGAGGGAAAATGTATACCGACAAAGA
GCAAAAGAGCGTGCTCGACGGGAGCAAGACAAATCTCTTCAGGAGGAAAT
CAGACAGCGTCCTCGGAGGAAGAAAGTGCCTTTAGCAGCTACTGTGCCCG
TGGTACCTCGCAGCACAAACAGCTTCTCTCTTAAGACGGCACACGTACGG
GCCAGACTAGAGAAAGAGAAGAGCGATCTCAAACGACAAAAACAGGAGGA
GTTGGCGAGGCGTACCAGGCAGCAAGCAATGAGCAAGACTATCTCTGAAG
TAATGAGGCGGGTGGATTCTCAGCAAACGAGACTAGCTCGTCGACCGACA
GCCGCCAAGGCTCGTCAAACGGCCCGGGAATCTCAAGAAAGATATCATGT
CTGTCTGAAAGAGAACAGGCAAAAGCTGGAACAGGCCACTCGCGATGCCC
CTACACTGTGGGAGAGGCACGATGCTGAGGTTCGCAAGGAGGCAGCAAAA
CGTATCGCGTTGTCGACTATCGCAGAAAGAGTATTCGGAGCCGGATCGGT
GAAGGCGGAGCGTGAAAACTGGAGGGGGTCTGGTGTTGACAAAATTTTTG
ATGAAGAAGAGCGTGCACTGTTGTGTTGTGCGAATTAGGCCACTCGCGAT
GCCCCTACACTGTGGGAGAGGCACGATGCTGAGGTTCGCAAGGAGGCAGC
AAAACGTATCGCGTTGTCGACTATCGCAGAAAGAGTATTCGGAGCCGGAT
CGGTGAAGGCGGAGCGTGAAAACTGGAGGGGGTCTGGTGTTGACAAAATT
TTTGATGAAGAAGAGCGTGCACTGTTGTGTTGTGCGAATTAG
back to top