mRNA_E-siliculosus-1a_F_contig118.1160.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig118.1160.1
Unique NamemRNA_E-siliculosus-1a_F_contig118.1160.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 7.230e-154
Identity = 232/240 (96.67%), Postives = 232/240 (96.67%), Query Frame = 2
Query:   65 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEEE 784
            MKATLATTALFCVG ANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAG       KVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEEE
Sbjct:    1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAG-------KVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEEE 233          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A835Z4H5_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA)

HSP 1 Score: 269 bits (688), Expect = 4.190e-84
Identity = 146/234 (62.39%), Postives = 170/234 (72.65%), Query Frame = 2
Query:   65 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 763
            M++ L   A   + A +  F  +AF GQ L A T   S   + ++MKIFDWKRRES+   L +  ++  TL P+PGSR R  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN   EGATV+FE+L        + G +TKT  RWHKVVG  EL   GLTVQAH FT SA EAIE  GGKCQLLSPTTNE++ M
Sbjct:    1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKAS---SSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLH-------EQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 224          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA)

HSP 1 Score: 257 bits (657), Expect = 1.870e-79
Identity = 138/222 (62.16%), Postives = 162/222 (72.97%), Query Frame = 2
Query:  101 VGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDG-LVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 763
            V  A+A+ A +AF GQ +   T   S     V+MKIFDWKRR+ +     +  ++  TL P+PGSR R  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN   EG+TV+FE+L        + G +TKT  +WHKVVG  EL    LTVQAH FT SA EAIE  GGKCQLLSPTTNE++ M
Sbjct:   14 VAVADAWVATSAFNGQAVGTHTCKASN---AVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLH-------EQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA)

HSP 1 Score: 236 bits (602), Expect = 2.960e-71
Identity = 127/197 (64.47%), Postives = 144/197 (73.10%), Query Frame = 2
Query:  182 TTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGM-ELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 757
            T TG TMK+FDWKRRE+++  + D       +D LKPAPGSR R KRKGRGIAAGQGA+CGFGMRGQKSRSG   RAGFEGGQQPLYRRLPK VG+PMGPGH+K  +NLIK D +NG  EG+TV+F SL        +AG VTK K+  HKVV G  E    G+TVQAH FT SA  AIE  GGKC+LLSPTT  VL
Sbjct:   33 TATGPTMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLF-------EAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVL 222          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA)

HSP 1 Score: 236 bits (601), Expect = 4.170e-71
Identity = 127/199 (63.82%), Postives = 146/199 (73.37%), Query Frame = 2
Query:  176 SRTTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGM-ELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 757
            S +T+ +TMK+FDWKRRE+++  + D       +D LKPAPGSR R KRKGRGIAAGQGA+CGFGMRGQKSRSG   RAGFEGGQQPLYRRLPK VG+PMGPGH+K  +NLIKLD LNG  EG+TVNF SL        ++G +TK+K   HKVV G  E    GL VQAH FT SA  AIE  GGKC+LLSPTT  VL
Sbjct:   31 STSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLF-------ESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVL 222          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S2K337_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K337_9STRA)

HSP 1 Score: 233 bits (595), Expect = 2.950e-70
Identity = 125/212 (58.96%), Postives = 149/212 (70.28%), Query Frame = 2
Query:  137 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 760
            F+G QL   TS  S     + MK++DWKRRE+++  + D       +D +KPAPGSR+R  RKGRGI+AGQGA+CGFGMRGQK+RSG   R GFEGGQQPLYRRLPK VGRP GPGH K  +N IKL  LNG  EG+TVNF+SL        +    TK+K+  HK+VGG EL   GLTVQAH FTKSA EAIEA GGKC+LL  TT EV++
Sbjct:   23 FSGNQLQCTTSNQSN----LNMKLYDWKRREADESAINDVENFEFTLDNIKPAPGSRKRFTRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHEKTIYNTIKLSELNGAAEGSTVNFDSLF-------ETKATTKSKYSIHKIVGGTELTAKGLTVQAHAFTKSAREAIEASGGKCELLKATTGEVIA 223          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S2V549_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V549_9STRA)

HSP 1 Score: 230 bits (587), Expect = 6.720e-69
Identity = 138/231 (59.74%), Postives = 167/231 (72.29%), Query Frame = 2
Query:   92 LFCVGAANAFFAPTAFTGQQLTA--GTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVD--TLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTK-----HRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 757
            L  +GAA AF +P++F GQQL    GTS     T  V+MKI+DWK R+ ++   +D V      L+PAPGS +RHKRKGRGIAAGQGASCGFGMRGQKSRSG  VR GFEGGQ PLYRR+PK+ GRPMGPGH K ++ L++ + L+G++EG+TVNFESLRAAG  +   GK TK K     H+  KVVGG +L T GLTVQAH FT SA +AIE  GGKC +LS TTN+ L
Sbjct:    9 LAILGAAVAF-SPSSFGGQQLARVQGTS-----TNTVSMKIYDWKNRQ-KNWKHIDEVEFTHTNLRPAPGSTKRHKRKGRGIAAGQGASCGFGMRGQKSRSGKSVRPGFEGGQTPLYRRIPKIRGRPMGPGHQKIEYALMQFNFLDGVEEGSTVNFESLRAAGK-MPKQGKRTKHKRNSGNHQLIKVVGGRDLNTKGLTVQAHAFTASAKKAIEEAGGKCVVLSKTTNKPL 231          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A448ZNF8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA)

HSP 1 Score: 228 bits (582), Expect = 2.520e-68
Identity = 124/213 (58.22%), Postives = 156/213 (73.24%), Query Frame = 2
Query:  137 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETT-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 760
            FTG +L A +++ + T   ++MK+ DWKRR +++  + D       +D+L+PAPGSR++  RKGRGI+AGQGA+CGFGMRGQKSRSG   R GFEGGQQPLYRRLPK  GRPMGPGHTKK++NLI+LDALNG+  G+T NFESL        ++  VTK+KH  HKVV G E  T   +TVQAH FTKSA  AIE  GGKC+LL P+T EV++
Sbjct:   21 FTGTRLAAVSTSSANT---LSMKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLF-------ESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVIA 223          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S0G633_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G633_9RHOD)

HSP 1 Score: 226 bits (575), Expect = 5.410e-67
Identity = 121/196 (61.73%), Postives = 143/196 (72.96%), Query Frame = 2
Query:  194 VTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGG-MELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEE 778
            V MKIFDWK+R     + +  ++  TLKPAPGS QR KRKGRG +AGQG SCGFGMRGQKSRSG   R GFEGGQ PLYRR+PK VGRPMGPGH+  ++ L+K++ LN  +EG  V  ESL+AAG+       VTK K +  KVVGG +EL    LTV+AH FT SAV AIEA GGKCQLL+PTTNE L MD++EE
Sbjct:   47 VHMKIFDWKKRGQSGEMEIGEMSFTTLKPAPGSNQRKKRKGRGHSAGQGGSCGFGMRGQKSRSGRPSRPGFEGGQNPLYRRVPKYVGRPMGPGHSYTKYGLLKIEDLNKAEEGTVVTQESLQAAGI-------VTKNKLKLTKVVGGNVELTVKNLTVKAHAFTTSAVAAIEAAGGKCQLLNPTTNEDLDMDDDEE 235          
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP)

HSP 1 Score: 225 bits (573), Expect = 5.820e-67
Identity = 125/230 (54.35%), Postives = 152/230 (66.09%), Query Frame = 2
Query:   89 ALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESE---DGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDE 769
            A F   + +AFFA        +     A  R     +MK+FDWK+R +E       +  ++V T+ PAPGSR+R  RKGRG+AAGQG SCGFGMRGQKSRSG   R GFEGGQ PLYRRLPK VGRPMGPGHTK  +NL+KLD LN   EG  V F++L        ++GK+TK K +  K++GG EL    LTV+AH FT SAVEAIEA GGKC LLSPTT E ++M+E
Sbjct:    2 AAFVGASGSAFFAAQRTASVNVAVCGKAGVRRAVAPSMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALV-------ESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINMEE 224          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKW4_ECTSI7.230e-15496.67Chloroplast 50S ribosomal protein L15 n=1 Tax=Ecto... [more]
A0A835Z4H5_9STRA4.190e-8462.39Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]
A0A836CHQ3_9STRA1.870e-7962.16Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]
A0A7S1BF06_9STRA2.960e-7164.47Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BKP2_9STRA4.170e-7163.82Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2K337_9STRA2.950e-7058.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2V549_9STRA6.720e-6959.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448ZNF8_9STRA2.520e-6858.22Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A7S0G633_9RHOD5.410e-6761.73Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z048_PORPP5.820e-6754.3550S ribosomal protein L15 n=1 Tax=Porphyridium pur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig118contigE-siliculosus-1a_F_contig118:58863..63010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size723
Model size1600
Exons7
Ec32 orthologEc-17_001600.1
Ec32 ortholog description50S ribosomal protein L15, chloroplast
Hectar predicted targeting categorychloroplast
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG0200@1,KOG0846@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0000311,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0019538,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02876
Preferred namePRPL15
Seed eggNOG ortholog2880.D7FKW4
Seed ortholog evalue2.8e-123
Seed ortholog score448.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.7121177-UTR-E-siliculosus-1a_F_contig118:58862..596751622927699.7121177-UTR-E-siliculosus-1a_F_contig118:58862..59675Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 58863..59675 -
1696318643.688195-UTR-E-siliculosus-1a_F_contig118:58862..596751696318643.688195-UTR-E-siliculosus-1a_F_contig118:58862..59675Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 58863..59675 -
1622927699.8132043-UTR-E-siliculosus-1a_F_contig118:62946..630101622927699.8132043-UTR-E-siliculosus-1a_F_contig118:62946..63010Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 62947..63010 -
1696318643.7484627-UTR-E-siliculosus-1a_F_contig118:62946..630101696318643.7484627-UTR-E-siliculosus-1a_F_contig118:62946..63010Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 62947..63010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.7268991-CDS-E-siliculosus-1a_F_contig118:59675..597951622927699.7268991-CDS-E-siliculosus-1a_F_contig118:59675..59795Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 59676..59795 -
1696318643.6974015-CDS-E-siliculosus-1a_F_contig118:59675..597951696318643.6974015-CDS-E-siliculosus-1a_F_contig118:59675..59795Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 59676..59795 -
1622927699.73757-CDS-E-siliculosus-1a_F_contig118:60016..600961622927699.73757-CDS-E-siliculosus-1a_F_contig118:60016..60096Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 60017..60096 -
1696318643.7048097-CDS-E-siliculosus-1a_F_contig118:60016..600961696318643.7048097-CDS-E-siliculosus-1a_F_contig118:60016..60096Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 60017..60096 -
1622927699.7487752-CDS-E-siliculosus-1a_F_contig118:60326..603471622927699.7487752-CDS-E-siliculosus-1a_F_contig118:60326..60347Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 60327..60347 -
1696318643.712319-CDS-E-siliculosus-1a_F_contig118:60326..603471696318643.712319-CDS-E-siliculosus-1a_F_contig118:60326..60347Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 60327..60347 -
1622927699.7631454-CDS-E-siliculosus-1a_F_contig118:60716..607981622927699.7631454-CDS-E-siliculosus-1a_F_contig118:60716..60798Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 60717..60798 -
1696318643.7196956-CDS-E-siliculosus-1a_F_contig118:60716..607981696318643.7196956-CDS-E-siliculosus-1a_F_contig118:60716..60798Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 60717..60798 -
1622927699.7749233-CDS-E-siliculosus-1a_F_contig118:61389..616281622927699.7749233-CDS-E-siliculosus-1a_F_contig118:61389..61628Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 61390..61628 -
1696318643.7268717-CDS-E-siliculosus-1a_F_contig118:61389..616281696318643.7268717-CDS-E-siliculosus-1a_F_contig118:61389..61628Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 61390..61628 -
1622927699.7858095-CDS-E-siliculosus-1a_F_contig118:62452..625841622927699.7858095-CDS-E-siliculosus-1a_F_contig118:62452..62584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 62453..62584 -
1696318643.7341316-CDS-E-siliculosus-1a_F_contig118:62452..625841696318643.7341316-CDS-E-siliculosus-1a_F_contig118:62452..62584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 62453..62584 -
1622927699.8002005-CDS-E-siliculosus-1a_F_contig118:62897..629461622927699.8002005-CDS-E-siliculosus-1a_F_contig118:62897..62946Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 62898..62946 -
1696318643.7415314-CDS-E-siliculosus-1a_F_contig118:62897..629461696318643.7415314-CDS-E-siliculosus-1a_F_contig118:62897..62946Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 62898..62946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig118.1160.1prot_E-siliculosus-1a_F_contig118.1160.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig118 59676..62946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig118.1160.1

>prot_E-siliculosus-1a_F_contig118.1160.1 ID=prot_E-siliculosus-1a_F_contig118.1160.1|Name=mRNA_E-siliculosus-1a_F_contig118.1160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=241bp
MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFD
WKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMR
GQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDAL
NGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTV
QAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEEE*
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mRNA from alignment at E-siliculosus-1a_F_contig118:58863..63010-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig118.1160.1 ID=mRNA_E-siliculosus-1a_F_contig118.1160.1|Name=mRNA_E-siliculosus-1a_F_contig118.1160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4148bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:58863..63010- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCAGCCAGAGAGACATACACAACACCGAGGCGACAGGAGAGGCCGTGCC GAGAACTCCACATCATGAAGGCTACTCTTGCGACGACCGCACTCTTTTGC GTGGGGGCAGCGAGTGAGTACATTCGTGATTTTTGTGTAATCGCTTGGGA GCGTCAGCTCGCTGATTTGAGCTTGACGTGCAGGACCACCCGACAGCCTT GAAGACGCATGTCGTCTCTGCCTCACCCTCTTACCTCTCGGCTCTACCGA TCGTATCGATTGCAGTTTGGTTCACCTTGGTAAGAGATGGCCATCCAGTG CGATATTGTAAAGTGTCGTGCTTTTTGAAAACTCCTAGCGGCTACAACGA GGGTGTGTGCGGCAGCGGGTGACTCACAAACACGCCACATGTGTGATTGC ATGAACCCTTTCCACCGGCGGAACAGATGCGTTCTTCGCTCCCACTGCCT TCACCGGTCAGCAGCTGACAGCGGGGACTAGTGCACCATCGCGCACGACG ACGGGTGTGACCATGAAAATCTTCGACTGGAAAAGAAGAGAAAGCGAGGA TGGCCTAGGTAAGCGCTTTCGTCTGCCTTGCGATCGTAGGAAAAGCGTGG CAGTAACCGACCCTTTTTTTGCAAGGTTGTTGCACTTGTTAAAGCCGATT CTTGTATTGCATCCAGTTGGTTTTAATTAAGGAGGAATAAATACACGCAC AGAAAGACTACCCATTCATTAATATTACTAGCCTTGCAGACCCAAGGCAC ACTCAAGTGGTGGGTGTGGGTAGCTCTGAGTATGGCGCTTCATCGAACAA GCTAACGTTATCGTATGCTGTAGACAGAACCTCAGTTTCATATCTTGTAA AGGTTCATATTATAGTATGCATTTTCTCAATATATACATCAACCCGCTCG ACATAATTTTGTTTTACACGTGTCTCGCGAAAAGTCTCTGTGCACACGGG GCTCATAAAATGAAATTCCAGACAATACCGTTCCCAGCAGGGGATGGTGT TGCAATATATGTATGAATGTTGAGGTTTGGTTCAAGTCGATACGGCATCC AGTGCTGGACACTAGTCGGAATATCCGCTCTTGCCGCGTACCAGGTGGTG TTAAAACAACAGATTTGACTGAAGCGACACAGCAATTTGAAGTAGATTTG TAGAGTCAAGCTGAAGTTGGACCAAATTTGTGAGTCAACCTACGCAGACA GCAGTGGTAGGTTTTAGGCACTCAATATTACAGCAGTAGCTTCGGAGACA AAACCTTCTCGTGTTCATGATTTATAGAACATGTGCCGAGTCGCATCGCT GATGTTCTCCACGGCTACCTACATGTACGCGCCTAACGGAATTCCCTCCT GTTGTTTCCGTTGGGCTGTTTCGCGGCGCCAGTTCTTGACAGGGTCGCTG TTGACACCCTCAAGCCTGCACCGGGCTCGCGCCAACGCCACAAGCGAAAG GGCCGCGGTATCGCTGCCGGACAGGGGGCATCATGTGGTTTCGGTATGCG AGGGCAAAAGTCTCGCTCCGGCCCTGGAGTGCGGGCAGGTTTCGAGGGTG GGCAACAGCCTCTTTACCGCCGCCTACCTAAGCTAGTTGGCCGCCCCATG GGCCCCGGCCACACCAAGAAGGTTGGTAGGGTGTACTGGTTGCTTTTGTG GATGAATGCTCGTGGTCATTGAACTTCGCGAGAAAGACTGCCGAGAGGTA GGGAGCGCATCACGGCAAATGCCACACTGAGAACATGTTGATTGCGGCCG AGTTTCCAATAATGATTGTCTTCCGTTGTGTCTCGCGGTCAGGGTCAGGT TGGGAGTATGCATGACTTTTGCATTCCGCGCATTCCCGTCACTCGAAAGT GTGGAAGGAAGGCCACGTTGTTGTGCTGTTTGGCTCCATAGGAATCCGAA ATAATCATGAACATGTTTTAAGTTTGCGTTTATGGGGTGGCATGGAAGTC AAGCCCCAATTGACCAATGGAAAATGGGCGTGATTACTTGATGAAACGAC CTCCACCTGAACCTCCACCTGAAACTCCCAGATCGCCGTCTGTCTTCGAC CTACGTGTTCCTGTTCGCGAGGAGCATTGTAGAATGACGCCAACTGCCCT GTCTGTGTGCCTGCTTGTAGTGGTACGCTTTCGACTCTCTCGTTGTCGCC CACCCAGCCCCCCCCCACCTCCCCCGCCCCCACTCCCGCCCCTCACCCTC CCCCTGCAATAGCAATTCAACCTCATTAAGCTGGACGCCCTCAATGGACT GGATGAAGGTGCCACCGTTAACTTCGAATCGCTTCGTGCGGCCGGTGAGT CATGTGGCAATTACTGCGCCCTCGGTGTGTACCTCTCAACCGCGTTGCAA GTGCCGTGCCCAAGTCTCCGTCGGATCTAGAGAAACCGCGTCTCTGCTTC GGCCTGCGGGGTGCCTTCGGCGGCGGGGGCAGGGCGGACAGAGTAGAGAG CTTCCGAATACATGTGCTGAGATCAAGACACACCATTACATGCGCTTCTT CGACCACCGCCGTAGTTACAGTGCTAAAACCTTCTACATTCCAACGCAGA GATCGGGTGCCATTTGTGGCGGGTGTACTCGCCTTAAATGAGCGGAAGTC GTGACTCTTGCTCTTGTTTCCCTTTTCTCACAACACACCCGTGATGCTTT GTTTTTACTGCAGGATTGGGGATTGGGGATGCAGGTGAGCTGCAGACTGC AGGGTCCCACGCACGCAGCTGGCTATATATGAGTTTTGCTCAATCTCGGT GACAACAGTCGGGGCGTCCACTGAACCAACTATACCCACTGCAGTGTAGA TATTTTTTGGTAAATGTGGGAAGGACGTTTAAGGGAGGCATTTCGTGGTT AAACGATACTACAGGATGATATGGTCACAGAATGCGCTGTACACTGCCCG AAAAATAATGTCAGGTAAAGTCACCAAGACCAAGCACAGGTGGCACAAGG TTGTGGGTGGAATGGAGTTGGAAACAACAGGGCTGACAGTACAGGTACGA GGAAAAAATGTGCAAATGGCGTCAGTGATTTTGTTCTCCAGTACATTTGC TCCCGTAACATTCAAGGCATGCATGTAAGTTGAAATTCGATACGAGCTGC GACAGGCGAACGCGCCCTCCAGTATTGCGATAGTTCCATGACGTATCGCG CGGGGGGAGTTGACCATTCCACCGGAACACGTTTTGTCCGTCTCTCCTTC TATTATGTGCCTCAGGCCCACGGGTTCACGAAGAGCGCAGTTGAGGCGAT AGAGGCCAAGGGCGGGAAATGCCAACTGCTTTCCCCGACGACGAATGAAG TTTTGTCGATGGACGAGGAGGAGGAGGAAGAGTAGAGTATGCAAGGCCGT ACGAGCGTCCTTGCAAGACGGAACGTGGCAATCACAGATCAGCGCTCGAT GTTTTTTGTAGCTGTGTGATATATCGCCGGCCTTTGGATGCGATTTAGTC TAGAACATGTCTTTTGGGCGGTAGTTTATCGGAAGCCAGTTGTGAGTCTC ATGTTCGAACTCCTCCAGCTTTCAAGCATGAAAAGGATTAAGACCCTTCT TTATGGAAACATAATCTTGCAAATATATCTTGGCATTTTGACCCAAGGTT TGCTCACGATATACCGCCGCCAACATTTGCAGTATTGCAATTTATGGGGG GAATATGTTGAATGTTGAAAAAGCGGCGTGTTGTTCCTCTATTCTGCTTG AAGTTGATAAAAGGCACGACGGCCACTTGGTCCACAGAAAATGCCAAGGC GTGGCGAAAAGTGAGCATGACGCAGTTGTAGAAGGGGCGTCCCTCCGCCA GCTGTATTTCCTCAACACTATGGGTGGATACTATTCAGCAGCCTCTCTCT CTCATTCCTCTTTTTCATGCCACCAACAAAGAGCGATGGGCGCCTACCTG GGGTGCAAAATAGAAGCCGTTGCCCACGAGCTCGTGTCAAGCGGAGAAAC AAAATTGTTCCATTGCTGTCCAACTGACAAGAACAACCCGAAGCCGATTA CACCGGTGCACGTATCTCACTATGTAGCAGGCGTTCCAAGGTCAAACCTC CGGCGAAGTCATGTGCACTCACGGATCTGGCTCGGGTGCAAACGGATTGG GTGTGGGGTGATTCGATGAAGAGATAGAAGCGTCGAACACGACAGAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig118:58863..63010-

>mRNA_E-siliculosus-1a_F_contig118.1160.1 ID=mRNA_E-siliculosus-1a_F_contig118.1160.1|Name=mRNA_E-siliculosus-1a_F_contig118.1160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:58863..63010- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGGCTACTCTTGCGACGACCGCACTCTTTTGCGTGGGGGCAGCGAA
TGAAGGCTACTCTTGCGACGACCGCACTCTTTTGCGTGGGGGCAGCGAAT
GCGTTCTTCGCTCCCACTGCCTTCACCGGTCAGCAGCTGACAGCGGGGAC
TAGTGCACCATCGCGCACGACGACGGGTGTGACCATGAAAATCTTCGACT
GGAAAAGAAGAGAAAGCGAGGATGGCCTAGATGCGTTCTTCGCTCCCACT
GCCTTCACCGGTCAGCAGCTGACAGCGGGGACTAGTGCACCATCGCGCAC
GACGACGGGTGTGACCATGAAAATCTTCGACTGGAAAAGAAGAGAAAGCG
AGGATGGCCTAGTTCTTGACAGGGTCGCTGTTGACACCCTCAAGCCTGCA
CCGGGCTCGCGCCAACGCCACAAGCGAAAGGGCCGCGGTATCGCTGCCGG
ACAGGGGGCATCATGTGGTTTCGGTATGCGAGGGCAAAAGTCTCGCTCCG
GCCCTGGAGTGCGGGCAGGTTTCGAGGGTGGGCAACAGCCTCTTTACCGC
CGCCTACCTAAGCTAGTTGGCCGCCCCATGGGCCCCGGCCACACCAAGAA
GTTCTTGACAGGGTCGCTGTTGACACCCTCAAGCCTGCACCGGGCTCGCG
CCAACGCCACAAGCGAAAGGGCCGCGGTATCGCTGCCGGACAGGGGGCAT
CATGTGGTTTCGGTATGCGAGGGCAAAAGTCTCGCTCCGGCCCTGGAGTG
CGGGCAGGTTTCGAGGGTGGGCAACAGCCTCTTTACCGCCGCCTACCTAA
GCTAGTTGGCCGCCCCATGGGCCCCGGCCACACCAAGAAGCAATTCAACC
TCATTAAGCTGGACGCCCTCAATGGACTGGATGAAGGTGCCACCGTTAAC
TTCGAATCGCTTCGTGCGGCCGCAATTCAACCTCATTAAGCTGGACGCCC
TCAATGGACTGGATGAAGGTGCCACCGTTAACTTCGAATCGCTTCGTGCG
GCCGGATTGGGGATTGGGGATGCAGGATTGGGGATTGGGGATGCAGGTAA
AGTCACCAAGACCAAGCACAGGTGGCACAAGGTTGTGGGTGGAATGGAGT
TGGAAACAACAGGGCTGACAGTACAGGTAAAGTCACCAAGACCAAGCACA
GGTGGCACAAGGTTGTGGGTGGAATGGAGTTGGAAACAACAGGGCTGACA
GTACAGGCCCACGGGTTCACGAAGAGCGCAGTTGAGGCGATAGAGGCCAA
GGGCGGGAAATGCCAACTGCTTTCCCCGACGACGAATGAAGTTTTGTCGA
TGGACGAGGAGGAGGAGGAAGAGTAGGCCCACGGGTTCACGAAGAGCGCA
GTTGAGGCGATAGAGGCCAAGGGCGGGAAATGCCAACTGCTTTCCCCGAC
GACGAATGAAGTTTTGTCGATGGACGAGGAGGAGGAGGAAGAGTAG
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