mRNA_E-siliculosus-1a_F_contig118.1160.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI) HSP 1 Score: 447 bits (1151), Expect = 7.230e-154 Identity = 232/240 (96.67%), Postives = 232/240 (96.67%), Query Frame = 2
Query: 65 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEEE 784
MKATLATTALFCVG ANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAG KVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEEE
Sbjct: 1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAG-------KVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEEE 233
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A835Z4H5_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA) HSP 1 Score: 269 bits (688), Expect = 4.190e-84 Identity = 146/234 (62.39%), Postives = 170/234 (72.65%), Query Frame = 2
Query: 65 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 763
M++ L A + A + F +AF GQ L A T S + ++MKIFDWKRRES+ L + ++ TL P+PGSR R RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EGATV+FE+L + G +TKT RWHKVVG EL GLTVQAH FT SA EAIE GGKCQLLSPTTNE++ M
Sbjct: 1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKAS---SSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLH-------EQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 224
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA) HSP 1 Score: 257 bits (657), Expect = 1.870e-79 Identity = 138/222 (62.16%), Postives = 162/222 (72.97%), Query Frame = 2
Query: 101 VGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDG-LVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 763
V A+A+ A +AF GQ + T S V+MKIFDWKRR+ + + ++ TL P+PGSR R RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EG+TV+FE+L + G +TKT +WHKVVG EL LTVQAH FT SA EAIE GGKCQLLSPTTNE++ M
Sbjct: 14 VAVADAWVATSAFNGQAVGTHTCKASN---AVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLH-------EQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA) HSP 1 Score: 236 bits (602), Expect = 2.960e-71 Identity = 127/197 (64.47%), Postives = 144/197 (73.10%), Query Frame = 2
Query: 182 TTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGM-ELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 757
T TG TMK+FDWKRRE+++ + D +D LKPAPGSR R KRKGRGIAAGQGA+CGFGMRGQKSRSG RAGFEGGQQPLYRRLPK VG+PMGPGH+K +NLIK D +NG EG+TV+F SL +AG VTK K+ HKVV G E G+TVQAH FT SA AIE GGKC+LLSPTT VL
Sbjct: 33 TATGPTMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLF-------EAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVL 222
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA) HSP 1 Score: 236 bits (601), Expect = 4.170e-71 Identity = 127/199 (63.82%), Postives = 146/199 (73.37%), Query Frame = 2
Query: 176 SRTTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGM-ELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 757
S +T+ +TMK+FDWKRRE+++ + D +D LKPAPGSR R KRKGRGIAAGQGA+CGFGMRGQKSRSG RAGFEGGQQPLYRRLPK VG+PMGPGH+K +NLIKLD LNG EG+TVNF SL ++G +TK+K HKVV G E GL VQAH FT SA AIE GGKC+LLSPTT VL
Sbjct: 31 STSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLF-------ESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVL 222
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S2K337_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K337_9STRA) HSP 1 Score: 233 bits (595), Expect = 2.950e-70 Identity = 125/212 (58.96%), Postives = 149/212 (70.28%), Query Frame = 2
Query: 137 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 760
F+G QL TS S + MK++DWKRRE+++ + D +D +KPAPGSR+R RKGRGI+AGQGA+CGFGMRGQK+RSG R GFEGGQQPLYRRLPK VGRP GPGH K +N IKL LNG EG+TVNF+SL + TK+K+ HK+VGG EL GLTVQAH FTKSA EAIEA GGKC+LL TT EV++
Sbjct: 23 FSGNQLQCTTSNQSN----LNMKLYDWKRREADESAINDVENFEFTLDNIKPAPGSRKRFTRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHEKTIYNTIKLSELNGAAEGSTVNFDSLF-------ETKATTKSKYSIHKIVGGTELTAKGLTVQAHAFTKSAREAIEASGGKCELLKATTGEVIA 223
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S2V549_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V549_9STRA) HSP 1 Score: 230 bits (587), Expect = 6.720e-69 Identity = 138/231 (59.74%), Postives = 167/231 (72.29%), Query Frame = 2
Query: 92 LFCVGAANAFFAPTAFTGQQLTA--GTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVD--TLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTK-----HRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 757
L +GAA AF +P++F GQQL GTS T V+MKI+DWK R+ ++ +D V L+PAPGS +RHKRKGRGIAAGQGASCGFGMRGQKSRSG VR GFEGGQ PLYRR+PK+ GRPMGPGH K ++ L++ + L+G++EG+TVNFESLRAAG + GK TK K H+ KVVGG +L T GLTVQAH FT SA +AIE GGKC +LS TTN+ L
Sbjct: 9 LAILGAAVAF-SPSSFGGQQLARVQGTS-----TNTVSMKIYDWKNRQ-KNWKHIDEVEFTHTNLRPAPGSTKRHKRKGRGIAAGQGASCGFGMRGQKSRSGKSVRPGFEGGQTPLYRRIPKIRGRPMGPGHQKIEYALMQFNFLDGVEEGSTVNFESLRAAGK-MPKQGKRTKHKRNSGNHQLIKVVGGRDLNTKGLTVQAHAFTASAKKAIEEAGGKCVVLSKTTNKPL 231
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A448ZNF8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA) HSP 1 Score: 228 bits (582), Expect = 2.520e-68 Identity = 124/213 (58.22%), Postives = 156/213 (73.24%), Query Frame = 2
Query: 137 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETT-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 760
FTG +L A +++ + T ++MK+ DWKRR +++ + D +D+L+PAPGSR++ RKGRGI+AGQGA+CGFGMRGQKSRSG R GFEGGQQPLYRRLPK GRPMGPGHTKK++NLI+LDALNG+ G+T NFESL ++ VTK+KH HKVV G E T +TVQAH FTKSA AIE GGKC+LL P+T EV++
Sbjct: 21 FTGTRLAAVSTSSANT---LSMKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLF-------ESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVIA 223
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A7S0G633_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G633_9RHOD) HSP 1 Score: 226 bits (575), Expect = 5.410e-67 Identity = 121/196 (61.73%), Postives = 143/196 (72.96%), Query Frame = 2
Query: 194 VTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGG-MELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEE 778
V MKIFDWK+R + + ++ TLKPAPGS QR KRKGRG +AGQG SCGFGMRGQKSRSG R GFEGGQ PLYRR+PK VGRPMGPGH+ ++ L+K++ LN +EG V ESL+AAG+ VTK K + KVVGG +EL LTV+AH FT SAV AIEA GGKCQLL+PTTNE L MD++EE
Sbjct: 47 VHMKIFDWKKRGQSGEMEIGEMSFTTLKPAPGSNQRKKRKGRGHSAGQGGSCGFGMRGQKSRSGRPSRPGFEGGQNPLYRRVPKYVGRPMGPGHSYTKYGLLKIEDLNKAEEGTVVTQESLQAAGI-------VTKNKLKLTKVVGGNVELTVKNLTVKAHAFTTSAVAAIEAAGGKCQLLNPTTNEDLDMDDDEE 235
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP) HSP 1 Score: 225 bits (573), Expect = 5.820e-67 Identity = 125/230 (54.35%), Postives = 152/230 (66.09%), Query Frame = 2
Query: 89 ALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESE---DGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGLGIGDAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDE 769
A F + +AFFA + A R +MK+FDWK+R +E + ++V T+ PAPGSR+R RKGRG+AAGQG SCGFGMRGQKSRSG R GFEGGQ PLYRRLPK VGRPMGPGHTK +NL+KLD LN EG V F++L ++GK+TK K + K++GG EL LTV+AH FT SAVEAIEA GGKC LLSPTT E ++M+E
Sbjct: 2 AAFVGASGSAFFAAQRTASVNVAVCGKAGVRRAVAPSMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALV-------ESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINMEE 224 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig118.1160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig118.1160.1 >prot_E-siliculosus-1a_F_contig118.1160.1 ID=prot_E-siliculosus-1a_F_contig118.1160.1|Name=mRNA_E-siliculosus-1a_F_contig118.1160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=241bp MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDback to top mRNA from alignment at E-siliculosus-1a_F_contig118:58863..63010- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig118.1160.1 ID=mRNA_E-siliculosus-1a_F_contig118.1160.1|Name=mRNA_E-siliculosus-1a_F_contig118.1160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4148bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:58863..63010- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig118:58863..63010- >mRNA_E-siliculosus-1a_F_contig118.1160.1 ID=mRNA_E-siliculosus-1a_F_contig118.1160.1|Name=mRNA_E-siliculosus-1a_F_contig118.1160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:58863..63010- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |