mRNA_E-siliculosus-1a_F_contig118.1158.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig118.1158.1
Unique NamemRNA_E-siliculosus-1a_F_contig118.1158.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: D7FKW2_ECTSI (Sld5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW2_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 3.850e-134
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 2 
Query:   74 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST 655
            MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST
Sbjct:    1 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST 194
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: A0A7S2XZV1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV1_9STRA)

HSP 1 Score: 225 bits (574), Expect = 2.500e-68
Identity = 103/194 (53.09%), Postives = 143/194 (73.71%), Query Frame = 2 
Query:   74 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTL--GGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENE 649
            MNFG + K+LL ELKRS+WLP YNE  V+ +L EI   + EL  T   G R  ++IPD  KV +VVHHQAL+RNKR LL Y  +R +++  LRWETGPVVP+ LQ +LS  E E F+ YD +++ + +G+ +DLT D QPPKEL +EVR L DCGEIMT+ G++ L++G+THLLRR D E+L++QG+L+++ ++
Sbjct:    1 MNFGGRGKELLQELKRSEWLPNYNEKTVKDILKEIDLYWQELCATFDNGNRGNNEIPDAAKVGIVVHHQALMRNKRILLAYHMYRLEKLKALRWETGPVVPEHLQGALSGSEREFFSRYDSLVSGYCEGVGIDLTQDQQPPKELFIEVRALEDCGEIMTEQGTINLEKGSTHLLRRCDAENLIKQGMLEQISDD 194
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: A0A835ZIC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIC8_9STRA)

HSP 1 Score: 219 bits (558), Expect = 6.560e-66
Identity = 101/192 (52.60%), Postives = 143/192 (74.48%), Query Frame = 2 
Query:   83 GAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGG-RTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST 655
            G K+K LL EL++ DW+PP+NEDGVR +L EIQAL  E++DTL   R   ++P  VK+ + VHH  L  N+RCLL Y+++RA++ + LRW+TGPVVP  L  +LSA E + FN YDR+LT++ Q   LDLTAD +PP+EL+VEVR L+D  ++ TD G V+L +G  +LLR +DVEHLVRQG+L+++++ +T
Sbjct:    5 GTKAKRLLQELRQGDWMPPFNEDGVRAILQEIQALDQEISDTLASSRQGEEMPIQVKIGMAVHHAGLTHNRRCLLAYVRYRAEKASALRWDTGPVVPDSLAPNLSAAEQDFFNKYDRLLTDYQQDFGLDLTADARPPRELYVEVRSLTDDMDVFTDSGLVRLKKGARYLLRHTDVEHLVRQGMLEQIQSAAT 196
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: A0A3R7MJX0_9STRA (Sld5 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A3R7MJX0_9STRA)

HSP 1 Score: 206 bits (524), Expect = 6.760e-61
Identity = 102/192 (53.12%), Postives = 136/192 (70.83%), Query Frame = 2 
Query:   74 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTS--DIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELE 643
            M   AK K+LL EL+RSDWLPPYNED VR V+ E   L++E+   L     +  + P  V   L+V+HQ LLRNKRCL+ YL  R ++I  LRWETG ++P  L Q+L  REM+LFN YD++LT++     LDL+ADL+PPK+L+VEVRVL DCGE+MT+ G V L+  + H LRR DVE L+RQGLL++++
Sbjct:    1 MALNAKGKELLRELQRSDWLPPYNEDLVRQVVDESGLLHEEIVRKLNTFKDNFEEQPASVHCGLIVNHQCLLRNKRCLIAYLYHRVEKIKALRWETGTIIPAPLAQNLCQREMQLFNAYDQLLTDYMADFELDLSADLKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQIK 192
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: G4YZC9_PHYSP (Sld5 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZC9_PHYSP)

HSP 1 Score: 206 bits (523), Expect = 8.640e-61
Identity = 103/190 (54.21%), Postives = 135/190 (71.05%), Query Frame = 2 
Query:   74 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELE 643
            M   AK K+LL EL+RSDWLPPYNED VR V+ E   L++EL   L       +P  V+ +LVV HQ LLRNKRCLL YL  R ++I  LRWETG ++P  L Q+L  RE++ FN YD++LT++     LDL+ADL+PPK+L+VEVRVL DCGE+MT+ G V L+  + H LRR DVE L+RQGLL++++
Sbjct:    1 MALNAKGKELLRELQRSDWLPPYNEDLVRQVVEESGLLHEELNRKLE-TFKEGMPKSVECALVVSHQGLLRNKRCLLAYLHHRMEKIKALRWETGTIIPGPLAQNLCQREVQFFNQYDQMLTDYMADFELDLSADLKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQIK 189
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: A0A7S1C9Q6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9Q6_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.520e-59
Identity = 93/193 (48.19%), Postives = 144/193 (74.61%), Query Frame = 2 
Query:   80 FGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLG--GRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENES 652
            +G+K+K LL+EL+RSDWLP YN++ +R V+ EI AL+ EL DTL   G   +D+   V   ++V H+++LRNKRC+L YL+ R ++I  +RWETG ++P   ++ +SA+E++  + YD+++T + + + +D+TADL+PPK+L VEV+VL DCGEI TD G V LD+ + H LRRSDVEHL+RQG++++ + E+
Sbjct:    8 YGSKAKALLMELQRSDWLPSYNDEAIRQVVEEINALHAELVDTLEREGFEVADVA--VACGMLVQHESMLRNKRCVLAYLQARLEKIQAMRWETGAMIPPHCKRQMSAKEVDFAHQYDKLVTAYVRDVKIDITADLEPPKDLLVEVQVLKDCGEIWTDSGPVTLDKHSRHFLRRSDVEHLIRQGMVRQTDTEA 198
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: A0A225VV97_9STRA (DNA replication complex GINS protein PSF1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VV97_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.120e-58
Identity = 99/193 (51.30%), Postives = 136/193 (70.47%), Query Frame = 2 
Query:   74 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDI---PDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELE 643
            M   AK K+LL EL+RSDWLPPYNED VR V+ E   L++E++  +     +D+   P  V   LVV+HQ LLRNKRCL+ Y+  R ++I  LRWETG ++P  L Q+L   E++ FN YD++LT++     LDLTAD++PPK+L+VEVRVL DCGE+MT+ G V L+  + H LRR DVE L+RQGLL++++
Sbjct:    1 MALNAKGKELLRELQRSDWLPPYNEDLVRRVVEESGLLHEEISKKMS--MYADLVNEPASVHCGLVVNHQCLLRNKRCLIAYVHHRMEKIKALRWETGTIIPASLAQNLCQGEVQFFNQYDQLLTDYMADFELDLTADIKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQIK 191
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: A0A2R5GNH7_9STRA (DNA replication complex GINS protein PSF1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNH7_9STRA)

HSP 1 Score: 199 bits (505), Expect = 5.310e-58
Identity = 100/192 (52.08%), Postives = 137/192 (71.35%), Query Frame = 2 
Query:   80 FGAKSKDLLVELKRSDWLPPYN----EDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVK-VSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQEL 640
            +GAK ++LL+ELKRS+WLP YN    +DGVR VL EI ALY  +   +    + D+ +P     L+V+H + LRNKRCLL YLK+RAD I  LRW+ G  +P++L++ L A E + F+ YD IL+++ + ++LDL AD++PPK L+VEVRVL DCGEI T  G V L + TTH LRRSDVEHL+RQG L+++
Sbjct:    7 YGAKGRELLLELKRSEWLPAYNGKRQDDGVRQVLGEIDALYKRMRSRMA--ESRDMREPFYGCPLMVYHASTLRNKRCLLAYLKYRADLIGNLRWDAGSAIPEDLRRKLCAEEAQYFSAYDNILSDYMREVDLDLAADMEPPKNLYVEVRVLRDCGEIDTVSGPVVLAKDTTHNLRRSDVEHLIRQGALEQV 196
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: K3X6H6_GLOUD (Sld5 domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6H6_GLOUD)

HSP 1 Score: 198 bits (504), Expect = 6.170e-58
Identity = 97/193 (50.26%), Postives = 137/193 (70.98%), Query Frame = 2 
Query:   74 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLG--GRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELEN 646
            M   AK K+LL EL+RSDWLPPYN++ VR V+ E+ +L++++ + L   G      P  V   L+V HQ LLRNKRCLL YL  R ++I  LRWETG ++P  L  +L  RE++ F +YD++LT++     +DL+AD +PPK+L+VEVRVL DCGEIMT++G V L+  +TH LRR DVE L+RQGLL+++++
Sbjct:    1 MALCAKGKELLRELQRSDWLPPYNDELVRQVVEEVGSLHEQIMEKLRVFGDEIEQQPS-VHCGLIVSHQCLLRNKRCLLAYLYERTEKIKNLRWETGTIIPASLAPNLCQREVQFFQSYDQLLTDYMADFEIDLSADTKPPKDLYVEVRVLRDCGEIMTENGLVNLEANSTHFLRRVDVEQLIRQGLLEQIKH 192
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Match: A0A8K1CID8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CID8_PYTOL)

HSP 1 Score: 197 bits (501), Expect = 1.670e-57
Identity = 98/192 (51.04%), Postives = 136/192 (70.83%), Query Frame = 2 
Query:   74 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDP---VKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQEL 640
            M   AK K+LL +L+RSDWLPPYN++ VR V+ E+  L++++ + L  RT  D  +    V   L+V HQ LLRNKRC+L YL  R+++I  LRWETG ++P  L  +L+ RE++ FN YD++LT++     LDLTAD +PPK+L+VEVRVL  CGEIMT++G V L+  +TH LRR DVE L+RQG L++L
Sbjct:    1 MALCAKGKELLRDLQRSDWLPPYNDELVRQVVEEVGVLHEQILEKL--RTFGDDIEQHQSVHCGLIVSHQCLLRNKRCVLAYLYERSEKIKNLRWETGTIIPATLAPNLNQREVQFFNAYDQLLTDYMADFELDLTADAKPPKDLYVEVRVLKGCGEIMTENGLVNLEVNSTHFLRRVDVEQLIRQGFLEQL 190
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig118.1158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKW2_ECTSI3.850e-134100.00Sld5 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2XZV1_9STRA2.500e-6853.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZIC8_9STRA6.560e-6652.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3R7MJX0_9STRA6.760e-6153.13Sld5 domain-containing protein n=5 Tax=Phytophthor... [more]
G4YZC9_PHYSP8.640e-6154.21Sld5 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A7S1C9Q6_9STRA2.520e-5948.19Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A225VV97_9STRA1.120e-5851.30DNA replication complex GINS protein PSF1 n=1 Tax=... [more]
A0A2R5GNH7_9STRA5.310e-5852.08DNA replication complex GINS protein PSF1 n=1 Tax=... [more]
K3X6H6_GLOUD6.170e-5850.26Sld5 domain-containing protein n=2 Tax=Pythiaceae ... [more]
A0A8K1CID8_PYTOL1.670e-5751.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig118contigE-siliculosus-1a_F_contig118:46720..49850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size585
Model size1392
Exons5
Ec32 orthologEc-17_001580.1
Ec32 ortholog descriptionGINS complex
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00002,ko03012,ko03032
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EggNOG OGsCOG5230@1,KOG3303@2759
EggNOG free text desc.DNA strand elongation involved in nuclear cell cycle DNA replication
GOsGO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000727,GO:0000811,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0003674,GO:0003678,GO:0003774,GO:0003777,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005856,GO:0005871,GO:0005875,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0008574,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0022616,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0040007,GO:0042623,GO:0043009,GO:0043138,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0045787,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051225,GO:0051276,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070925,GO:0071103,GO:0071162,GO:0071704,GO:0071840,GO:0090068,GO:0090304,GO:0090307,GO:0140014,GO:0140097,GO:1900087,GO:1901360,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902292,GO:1902296,GO:1902315,GO:1902319,GO:1902806,GO:1902808,GO:1902850,GO:1902969,GO:1902975,GO:1902983,GO:1903047,GO:1990939,GO:2000045
KEGG ModuleM00286
KEGG koko:K03232,ko:K10732
Preferred nameGINS1
Seed eggNOG ortholog2880.D7FKW2
Seed ortholog evalue3e-107
Seed ortholog score394.4
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.416437-UTR-E-siliculosus-1a_F_contig118:46719..467921622927699.416437-UTR-E-siliculosus-1a_F_contig118:46719..46792Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 46720..46792 +
1696318643.51912-UTR-E-siliculosus-1a_F_contig118:46719..467921696318643.51912-UTR-E-siliculosus-1a_F_contig118:46719..46792Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 46720..46792 +
1622927699.4996192-UTR-E-siliculosus-1a_F_contig118:49116..498501622927699.4996192-UTR-E-siliculosus-1a_F_contig118:49116..49850Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 49117..49850 +
1696318643.5769503-UTR-E-siliculosus-1a_F_contig118:49116..498501696318643.5769503-UTR-E-siliculosus-1a_F_contig118:49116..49850Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig118 49117..49850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.427841-CDS-E-siliculosus-1a_F_contig118:46792..469451622927699.427841-CDS-E-siliculosus-1a_F_contig118:46792..46945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 46793..46945 +
1696318643.530885-CDS-E-siliculosus-1a_F_contig118:46792..469451696318643.530885-CDS-E-siliculosus-1a_F_contig118:46792..46945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 46793..46945 +
1622927699.4397264-CDS-E-siliculosus-1a_F_contig118:47171..472751622927699.4397264-CDS-E-siliculosus-1a_F_contig118:47171..47275Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 47172..47275 +
1696318643.5400493-CDS-E-siliculosus-1a_F_contig118:47171..472751696318643.5400493-CDS-E-siliculosus-1a_F_contig118:47171..47275Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 47172..47275 +
1622927699.4548345-CDS-E-siliculosus-1a_F_contig118:48140..482611622927699.4548345-CDS-E-siliculosus-1a_F_contig118:48140..48261Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 48141..48261 +
1696318643.5491722-CDS-E-siliculosus-1a_F_contig118:48140..482611696318643.5491722-CDS-E-siliculosus-1a_F_contig118:48140..48261Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 48141..48261 +
1622927699.4720676-CDS-E-siliculosus-1a_F_contig118:48744..488431622927699.4720676-CDS-E-siliculosus-1a_F_contig118:48744..48843Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 48745..48843 +
1696318643.558032-CDS-E-siliculosus-1a_F_contig118:48744..488431696318643.558032-CDS-E-siliculosus-1a_F_contig118:48744..48843Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 48745..48843 +
1622927699.4861271-CDS-E-siliculosus-1a_F_contig118:49008..491161622927699.4861271-CDS-E-siliculosus-1a_F_contig118:49008..49116Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 49009..49116 +
1696318643.5673563-CDS-E-siliculosus-1a_F_contig118:49008..491161696318643.5673563-CDS-E-siliculosus-1a_F_contig118:49008..49116Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 49009..49116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig118.1158.1prot_E-siliculosus-1a_F_contig118.1158.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig118 46793..49116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig118.1158.1

>prot_E-siliculosus-1a_F_contig118.1158.1 ID=prot_E-siliculosus-1a_F_contig118.1158.1|Name=mRNA_E-siliculosus-1a_F_contig118.1158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=195bp
MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRT
TSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETGPVVPQ
ELQQSLSAREMELFNTYDRILTNFTQGLNLDLTADLQPPKELHVEVRVLS
DCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLLQELENEST*
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mRNA from alignment at E-siliculosus-1a_F_contig118:46720..49850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig118.1158.1 ID=mRNA_E-siliculosus-1a_F_contig118.1158.1|Name=mRNA_E-siliculosus-1a_F_contig118.1158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3131bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:46720..49850+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCAGGATCATCACATGTTCATGCCATTCGGTGTTTATTGCACCTACGCG
ACGTACCGCAGTGAGCTCAAGCCATGAACTTCGGTGCAAAAAGCAAAGAT
CTGCTTGTAGAGTTGAAAAGAAGCGATTGGTTGCCGCCTTACAACGAAGA
CGGCGTTCGCGGCGTGTTGGCTGAGATTCAGGCTCTCTACGACGAACTCA
CGGATACTCTTGGAGGTAGAACAACGGTAAGGTCATGGGTTTGTGTATGC
ATATGAGGCTGGACAAGTCGTTCGGTAACGGCTGCTGTTTTGGTACTCGC
TGTATTATCGCGACGGTACTGACACGGTGCCAATGGCACGTTGAACATTC
TTCATTTAACCAACACATTCTCGGCAATCTGGCTGAGATGGTTTGTATTT
GAAGGAGGCACCCGTTTGCCTGCCTGCCCAATCTCTACCCCGCGTGTCGC
AGAGTGACATACCAGATCCAGTGAAGGTCAGCCTCGTGGTTCATCATCAA
GCGCTCCTACGTAATAAACGCTGCCTTCTTACGTACCTCAAGTGGAGAGC
AGACAGGTACTGGTGGGAAATTCGTGCGTTCTTCAGTGTTTCTCGTGGTT
CGTCGCCTCGAGCAAATTCAAACTTTCAAATTTTATTTAAAGCCAATCCG
GCGCCTGCATACGATGTATTCGTGGTATTCATAGGCTCCTAGGCTCAAAT
CAATAACCACCGCTTGTTCATCCCTCAAACTCTGTATTCCCTCTGCTGTG
AGCCGAAGAGGTAGCACTGCGGACACCAGGCATGAAAGGGAAAGGACAGA
TGTCGTCGGTGGCAACCTGCGAGAACAACATTAGCCACGCGAGAGACGGG
GAGAGTGTCGAATATGGCGAGACACACATGAAAGTGTTTGTCTATTGTAG
AACCCCAATGTTGAGAAACCCGCGAAAGTGTTGGTGCTTGGGTGTTTGTG
CGTGTCATAAGTTCAAGTGTCTTCGTCGGTCAACTGCTCAGTCCACGTTG
CTTCAAGACGAAGTCAGCTGTAACACAGCAATTCGGTTGACAAAAATTAA
CAATTCAAACGTTATCGGACTGATTCGTTCCGTCTTAAAGCACAACCGGC
ATCGAAACCAACAGATGCAGTTTACGTTATTGGACTGATTCGTTCCGTCG
TAAAGCACGACCGGCATCGAAAACCAACAGATGCAGTTTTTGTAGCACCG
TTGCCTCGTTGGTTGGCTACTATTTTACCCACGTGGAGAGGCGGTGGAGG
ATGTACCCTTATGTTGGGAGGATGCGAAGCGTTTGAAAAAAGAAGTGGAT
TCTCTCATGGATGGGTATCTTCTTGGAGGCACAATTCGTAATCACAATGC
TTGTGGGCTGGCATACCTCTGTTGATTTCCGTTGCTGGTTTTCATCGCCC
TCTCGATAATCCCCTATACAGAATCACCCAATTACGGTGGGAAACAGGAC
CTGTTGTTCCACAAGAACTGCAGCAAAGCTTGAGCGCCAGAGAGATGGAA
CTGTTCAACACGTATGATCGAATTCTTACGAACTTTACGCAGGTGGGTAA
TGTTCGTCTCTTGTCTTCGAGTATGTGTTGATCATGCTTTGAAATCAAGG
ATACGATTGGTTTGTTCGCTGCACGACGCGCACACCTAAAGTGAAACACG
CCTTCTGCAGTTGGCCATCTGCCAAGCAAACGCTGGCATCAGCATGCCGC
TTGTGCGAGCTGGCCCCGAAGGTGCTGATGATGGTGCTCAGCTTCCGAAA
TCCAACATCGCGGGAGATACATGACGAGTAAGGGTATCCCGCCGTGGAGA
ACGGGTCCCCTCACCTATTCTGCGGCAGACCGCTTCCCGATCCCTTTTTT
CTAACTCTAGTGTTTGTTCTGCGTCGCTGCAGTATTTTGCGGGCAGGCTT
TCGTTCAAGGCTTCCACATGAAAATTGTTTGACAATACTGCTCTGCAATT
TTTGAAAGCCGTGACTAAAGACTGCGTGCACCCAACTGAAGGAGCTCCTA
TATCCGGTGTACTTTCTTCTCACAGGGTCTGAATTTGGATCTCACAGCAG
ATCTTCAACCGCCGAAGGAGTTGCATGTGGAGGTCAGGGTTCTGAGCGAC
TGCGGGGAAATAATGACAGATCACGTGAGACCCGATCGTTTCGTCTGTAG
AGCGACGTATTGTTCGTATTGTACGCAGTGCCCATGCCGCGAGGGAGGTG
GCGTGTTGCAGAGCTGTGCCACGATGCGATGCTGTACAAGGTAGCCACCA
CGCATTTGCTCATGTCACACTTGTTTTTTTATTGTGCAGGGATCTGTAAA
GCTTGACCGTGGAACTACCCACCTGTTGCGGCGATCTGACGTGGAACATC
TCGTACGCCAAGGTCTACTCCAAGAGCTAGAGAACGAGTCGACCTAGCTT
CGCTTTCCCGTTGTTTGCAGTGGTGTCATACGTTGTCGGCTGCTGCCGCG
GTACTGAAAGCGGCAGTTAGGTATACACTGCGTGGAGTTCGGGAGCATTG
TTTGGACGAAATTCTGCAAAAAGGTCTACAGGTATATAGGTGTTCATTGG
AGGGCCTAACCTACTCCACGATCCAGTCAGCGAGCCCGTCTAACGAACAA
TAGGCCCGCTGGGAGTTCGGATCTCACCGGATTTGTCGTCGATTGTTCTA
CCTGAGAAAGCGTAAGCGTTAGATATTGACAGGCGGAGGGTTGGACCAGC
ACACCCACTATGAGCCGGCTCAGTAGGCTGACTGAGTGGGCTAATATGTA
GGTTAGCCGATAAACGAACAAGGAGTATGCCTGGAGGTCGAACTTCACCG
GGTGTGTTGCGGATTGTGTTCCCTGAGAGACAGATCACGCTGGGAGGTGA
GGGATTGGGCCCGCAAACTATGATCAGCCGGCTCAGTCAGCAGCGTTTGG
AGCGGGGGGGGTACATGCGGGTAGTCAGACCAACGAACCCTCAGAAGCCA
ACTCACGGCACACCTATTTAGTGAGATGGGATTCCTTACCAGCTTACGTT
TCCCATTAGATGAGCTAACCTGCCAAACCACTCAGTAAGCCGAACAACAG
CCTGCGCCATCCTCAATCACTCATTCTTCGACGAGCAAGAGAGTGAAAGT
TCGAAAGCCTGGAAGAAACCTTTGGCCTACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig118:46720..49850+

>mRNA_E-siliculosus-1a_F_contig118.1158.1 ID=mRNA_E-siliculosus-1a_F_contig118.1158.1|Name=mRNA_E-siliculosus-1a_F_contig118.1158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:46720..49850+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACTTCGGTGCAAAAAGCAAAGATCTGCTTGTAGAGTTGAAAAGAAG
CGATTGGTTGCCGCCTTACAACGAAGACGGCGTTCGCGGCGTGTTGGCTG
AGATTCAGGCTCTCTACGACGAACTCACGGATACTCTTGGAGGTAGAACA
ACGATGAACTTCGGTGCAAAAAGCAAAGATCTGCTTGTAGAGTTGAAAAG
AAGCGATTGGTTGCCGCCTTACAACGAAGACGGCGTTCGCGGCGTGTTGG
CTGAGATTCAGGCTCTCTACGACGAACTCACGGATACTCTTGGAGGTAGA
ACAACGAGTGACATACCAGATCCAGTGAAGGTCAGCCTCGTGGTTCATCA
TCAAGCGCTCCTACGTAATAAACGCTGCCTTCTTACGTACCTCAAGTGGA
GAGCAGACAGAGTGACATACCAGATCCAGTGAAGGTCAGCCTCGTGGTTC
ATCATCAAGCGCTCCTACGTAATAAACGCTGCCTTCTTACGTACCTCAAG
TGGAGAGCAGACAGAATCACCCAATTACGGTGGGAAACAGGACCTGTTGT
TCCACAAGAACTGCAGCAAAGCTTGAGCGCCAGAGAGATGGAACTGTTCA
ACACGTATGATCGAATTCTTACGAACTTTACGCAGAATCACCCAATTACG
GTGGGAAACAGGACCTGTTGTTCCACAAGAACTGCAGCAAAGCTTGAGCG
CCAGAGAGATGGAACTGTTCAACACGTATGATCGAATTCTTACGAACTTT
ACGCAGGGTCTGAATTTGGATCTCACAGCAGATCTTCAACCGCCGAAGGA
GTTGCATGTGGAGGTCAGGGTTCTGAGCGACTGCGGGGAAATAATGACAG
ATCACGGTCTGAATTTGGATCTCACAGCAGATCTTCAACCGCCGAAGGAG
TTGCATGTGGAGGTCAGGGTTCTGAGCGACTGCGGGGAAATAATGACAGA
TCACGGATCTGTAAAGCTTGACCGTGGAACTACCCACCTGTTGCGGCGAT
CTGACGTGGAACATCTCGTACGCCAAGGTCTACTCCAAGAGCTAGAGAAC
GAGTCGACCTAGGGATCTGTAAAGCTTGACCGTGGAACTACCCACCTGTT
GCGGCGATCTGACGTGGAACATCTCGTACGCCAAGGTCTACTCCAAGAGC
TAGAGAACGAGTCGACCTAG
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