mRNA_E-siliculosus-1a_F_contig11798.1155.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11798.1155.1
Unique NamemRNA_E-siliculosus-1a_F_contig11798.1155.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11798.1155.1 vs. uniprot
Match: D7G1A8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1A8_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 4.140e-53
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1 
Query:    7 DMTALMTEDESTAAKLEKQDIKQAFHDARTVKEAEKKEXXXXXXXXXXX-ATKPKGLSGDIFGGGAARSAGGLGGGWKQRMEERELKQRQEALSVNNTSAFPSLKDAMSA 333
            DMTALMTEDESTAAKLEKQDIKQAFHDARTVKEAEKKEXXXXXXXXXXX ATKPKGLSGDIFGGGAARSAGGLGGGWKQRMEERELKQRQEALSVNNTSAFPSLKDAMSA
Sbjct:   86 DMTALMTEDESTAAKLEKQDIKQAFHDARTVKEAEKKEXXXXXXXXXXXTATKPKGLSGDIFGGGAARSAGGLGGGWKQRMEERELKQRQEALSVNNTSAFPSLKDAMSA 195
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11798.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1A8_ECTSI4.140e-5399.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11798contigE-siliculosus-1a_F_contig11798:288..1674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size327
Model size336
Exons2
Ec32 orthologEc-12_005190.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11798.1155.1prot_E-siliculosus-1a_F_contig11798.1155.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11798 297..1674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.0085552-UTR-E-siliculosus-1a_F_contig11798:287..2961622927699.0085552-UTR-E-siliculosus-1a_F_contig11798:287..296Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11798 288..296 +
1696318643.303037-UTR-E-siliculosus-1a_F_contig11798:287..2961696318643.303037-UTR-E-siliculosus-1a_F_contig11798:287..296Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11798 288..296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927699.023177-CDS-E-siliculosus-1a_F_contig11798:296..3581622927699.023177-CDS-E-siliculosus-1a_F_contig11798:296..358Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11798 297..358 +
1696318643.3123503-CDS-E-siliculosus-1a_F_contig11798:296..3581696318643.3123503-CDS-E-siliculosus-1a_F_contig11798:296..358Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11798 297..358 +
1622927699.033939-CDS-E-siliculosus-1a_F_contig11798:1409..16741622927699.033939-CDS-E-siliculosus-1a_F_contig11798:1409..1674Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11798 1410..1674 +
1696318643.321103-CDS-E-siliculosus-1a_F_contig11798:1409..16741696318643.321103-CDS-E-siliculosus-1a_F_contig11798:1409..1674Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11798 1410..1674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11798.1155.1

>prot_E-siliculosus-1a_F_contig11798.1155.1 ID=prot_E-siliculosus-1a_F_contig11798.1155.1|Name=mRNA_E-siliculosus-1a_F_contig11798.1155.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=109bp
MTALMTEDESTAAKLEKQDIKQAFHDARTVKEAEKKEEPQQEEAKEEEAT
KPKGLSGDIFGGGAARSAGGLGGGWKQRMEERELKQRQEALSVNNTSAFP
SLKDAMSA*
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mRNA from alignment at E-siliculosus-1a_F_contig11798:288..1674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11798.1155.1 ID=mRNA_E-siliculosus-1a_F_contig11798.1155.1|Name=mRNA_E-siliculosus-1a_F_contig11798.1155.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1387bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11798:288..1674+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCAGTGACATGACGGCTCTCATGACCGAGGATGAATCGACGGCCGCCAA
GCTAGAGAAACAAGACATCAAGTGAGTCGTTTGAACAAAAAAAATCTGAC
CTCCACGTGCGCGCACGTGCATGCGGATCCGCACAGGCGAGATGTACGTT
GCGAGCGAAGATAGCAGGAAAAAACTAGGCAAAGCGATCAAGGAAGCCCG
TATTGTAGTCCCAAGGTTGTATTTCGTGCATCGATACGTTTTGTCGCGGA
TCTCTCGCCTGAAAAGGGTGAGCAGCGGTGACTAGGCTCGAGGAGGAGAA
GGACGCGGAATTGAGAACCTCCATCCTGAGGTTCATCAAAGACCAGACTC
AATCTGTAGAAGCAAAGACATTTTAAGTGGACGCCAATCACATGGTGTGG
GTTGGCGGCAGGCGCCATGATACCGGAGGGTGCTGCAGTCCCCTTTTGGT
GCATTGTGCGGTACGCTCGAGGCACGTTTGATACAATCACGATGTGAACC
TCTTCCGTTTTGGATGTTTCCTCGTCCCGTTAGCCAGACACCCACGGGTA
TTTTGTCCGTTCATTGTATTTTGCGAGATGTAAAGTTTAAAGTTCCTCTT
CATCGCACTCACTCTGTTTCCCGCCGCGAAATGGCATCGCGCACAGGCTC
GCGAAGGTAGGATAGCTCTGAACCATCATTGTTTCCACGGTGTTTGATGA
GATGGGCACGGTTGTGGAGCATCTTGTTTGCTGCTCCTCTCCGCTCAAGA
CTGCTCCGAACTGCCACTCCCGCGTATTGCAATACAGTAACGAGAAAGAG
TTATACGATCTTGTTCGCTCCGTTTGTTTGCCTAGCCTGGACCCATCAAA
ACTAGTCAGCACCCCAGGTTTCACTTTCAAGCTGGCCGATCTTTCTTTTC
CACTTCCCCGTAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAACCCG
CCCACCCCCAACAAGAGAACCCCCCGAAACCAGCAGCGACNNNNNNNNNN
CTCCGCGCCCCACCTCAACTCCCCACCCCCCCCGGTTCCCGTCTCCCCCT
CCCCCCTCTTTTCTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAA
TTACCGTACCCCCCTCCAAAAGGCAAGCTTTCCACGATGCAAGAACTGTC
AAGGAGGCGGAAAAGAAGGAAGAGCCGCAACAGGAGGAGGCAAAAGAGGA
GGAGGCCACCAAGCCCAAGGGGTTGTCGGGCGACATTTTCGGGGGTGGGG
CGGCGCGCAGCGCTGGTGGGCTCGGGGGGGGTTGGAAGCAGCGCATGGAG
GAGCGCGAGTTGAAGCAGCGGCAGGAGGCGCTCAGCGTGAACAACACCTC
TGCCTTCCCGTCTCTCAAGGACGCCATGAGCGCGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11798:288..1674+

>mRNA_E-siliculosus-1a_F_contig11798.1155.1 ID=mRNA_E-siliculosus-1a_F_contig11798.1155.1|Name=mRNA_E-siliculosus-1a_F_contig11798.1155.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11798:288..1674+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGGCTCTCATGACCGAGGATGAATCGACGGCCGCCAAGCTAGAGAA
ACAAGACATCAAATGACGGCTCTCATGACCGAGGATGAATCGACGGCCGC
CAAGCTAGAGAAACAAGACATCAAGCAAGCTTTCCACGATGCAAGAACTG
TCAAGGAGGCGGAAAAGAAGGAAGAGCCGCAACAGGAGGAGGCAAAAGAG
GAGGAGGCCACCAAGCCCAAGGGGTTGTCGGGCGACATTTTCGGGGGTGG
GGCGGCGCGCAGCGCTGGTGGGCTCGGGGGGGGTTGGAAGCAGCGCATGG
AGGAGCGCGAGTTGAAGCAGCGGCAGGAGGCGCTCAGCGTGAACAACACC
TCTGCCTTCCCGTCTCTCAAGGACGCCATGAGCGCGTAAGCAAGCTTTCC
ACGATGCAAGAACTGTCAAGGAGGCGGAAAAGAAGGAAGAGCCGCAACAG
GAGGAGGCAAAAGAGGAGGAGGCCACCAAGCCCAAGGGGTTGTCGGGCGA
CATTTTCGGGGGTGGGGCGGCGCGCAGCGCTGGTGGGCTCGGGGGGGGTT
GGAAGCAGCGCATGGAGGAGCGCGAGTTGAAGCAGCGGCAGGAGGCGCTC
AGCGTGAACAACACCTCTGCCTTCCCGTCTCTCAAGGACGCCATGAGCGC
GTAA
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