mRNA_E-siliculosus-1a_F_contig11797.1154.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: D1J708_ECTSI (Uncharacterized protein ycf40 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J708_ECTSI) HSP 1 Score: 146 bits (368), Expect = 1.890e-44 Identity = 71/75 (94.67%), Postives = 75/75 (100.00%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
MKINFFLLSLYVNGLKYKIYMN+PLQISDLLEFFNHQKEL+IIEYNGKIYNNLA+RPQYLR+KDKIEIITIVGGG
Sbjct: 1 MKINFFLLSLYVNGLKYKIYMNKPLQISDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A1I9LW05_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW05_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.230e-34 Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
MKINFFLLSL +NG+KYK+YM +P QI DLL+FFN+QKELIIIEYNGKIYNN TR QYL+QKD IEIITIVGGG
Sbjct: 1 MKINFFLLSLSLNGIKYKLYMTKPSQIFDLLKFFNYQKELIIIEYNGKIYNNSITRTQYLKQKDIIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A7T8JJY9_SCYLO (Ycf40 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JJY9_SCYLO) HSP 1 Score: 115 bits (288), Expect = 3.520e-32 Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLA--TRPQYLRQKDKIEIITIVGGG 225
MKINFFLLSL VNGL YK+Y+N+P QI DLLEFFN+QKEL+IIEYNGKIYNNL R YL++KD IEIITIVGGG
Sbjct: 4 MKINFFLLSLSVNGLTYKVYLNKPSQIFDLLEFFNYQKELVIIEYNGKIYNNLELHNRLSYLKKKDNIEIITIVGGG 80
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A5A4MNY4_9PHAE (Uncharacterized protein n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MNY4_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.870e-31 Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLA--TRPQYLRQKDKIEIITIVGGG 225
MKI FFLLSL VNGL+YKIYMN+P QI DLLEFFN QKEL+IIEYNGKIYN+L R YL+Q+D IEIITIVGGG
Sbjct: 1 MKIKFFLLSLSVNGLRYKIYMNKPSQIFDLLEFFNRQKELVIIEYNGKIYNDLELHNRLSYLKQRDNIEIITIVGGG 77
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A8F0JZ90_9PHAE (Uncharacterized protein n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0JZ90_9PHAE) HSP 1 Score: 112 bits (280), Expect = 5.070e-31 Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
MKI FFLL + +NG +YKIYM +P Q+ DLLEFFN+QKELIIIE+NGKI+N L PQYLRQKDKIEIITIVGGG
Sbjct: 1 MKITFFLLLVSLNGCEYKIYMTQPSQVLDLLEFFNYQKELIIIEHNGKIHNYLNKTPQYLRQKDKIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A0S0GBR2_COSCS (Uncharacterized protein n=4 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBR2_COSCS) HSP 1 Score: 111 bits (278), Expect = 1.020e-30 Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
MKINFFLL + +NG +YK+YM +P Q+ DL+EFFNHQK+L+IIE+NGKI N L PQY+RQKDKIE+ITIVGGG
Sbjct: 1 MKINFFLLLVSLNGCEYKVYMTQPSQVFDLIEFFNHQKDLVIIEHNGKIQNYLNKTPQYVRQKDKIEVITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A6B7F283_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7F283_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.020e-30 Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
MKI FFLLSL +NG +YKIYMN PLQI DLL+F ++QKEL+IIEYNGKIYNN + +YL+ KD+IEIITIVGGG
Sbjct: 1 MKIKFFLLSLSLNGFRYKIYMNRPLQIFDLLQFLSYQKELVIIEYNGKIYNNFNNQIKYLQHKDRIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A8F0F7V5_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7V5_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.940e-30 Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
MKINFFLLSL +NG +YKIYM + QI DLLEFFN+QKEL+IIE+NGKIYNN + QY++Q D+IEIITIVGGG
Sbjct: 1 MKINFFLLSLSLNGSRYKIYMGQNSQIFDLLEFFNYQKELVIIEHNGKIYNNSNIKSQYIKQNDRIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A5B9RD79_9PHAE (Ycf40 protein n=14 Tax=Laminariales TaxID=2886 RepID=A0A5B9RD79_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.200e-29 Identity = 52/75 (69.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
MKIN FLL + +NG +YK+YM +P Q+ DLLEFFNHQKEL+II++NGKI+N L QYLR+KDKIEIITIVGGG
Sbjct: 1 MKINLFLLLVSLNGCEYKVYMTQPSQVFDLLEFFNHQKELVIIQHNGKIHNYLNKNSQYLREKDKIEIITIVGGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A8E8PDZ4_9PHAE (ThiS n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8E8PDZ4_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.200e-29 Identity = 50/75 (66.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
MKINFFLL + +NG +YK+YM +P Q+ DLLEFFNHQKEL+II++NGKI+N+L +Y++QKDKIE+ITIVGGG
Sbjct: 1 MKINFFLLLVSLNGCEYKVYMTQPSQVFDLLEFFNHQKELVIIQHNGKIHNDLNKTQKYVKQKDKIEVITIVGGG 75 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11797.1154.1 >prot_E-siliculosus-1a_F_contig11797.1154.1 ID=prot_E-siliculosus-1a_F_contig11797.1154.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYback to top mRNA from alignment at E-siliculosus-1a_F_contig11797:1468..1695- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11797.1154.1 ID=mRNA_E-siliculosus-1a_F_contig11797.1154.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11797:1468..1695- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11797:1468..1695- >mRNA_E-siliculosus-1a_F_contig11797.1154.1 ID=mRNA_E-siliculosus-1a_F_contig11797.1154.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11797:1468..1695- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |