mRNA_E-siliculosus-1a_F_contig11797.1154.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11797.1154.1
Unique NamemRNA_E-siliculosus-1a_F_contig11797.1154.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: D1J708_ECTSI (Uncharacterized protein ycf40 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J708_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.890e-44
Identity = 71/75 (94.67%), Postives = 75/75 (100.00%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
            MKINFFLLSLYVNGLKYKIYMN+PLQISDLLEFFNHQKEL+IIEYNGKIYNNLA+RPQYLR+KDKIEIITIVGGG
Sbjct:    1 MKINFFLLSLYVNGLKYKIYMNKPLQISDLLEFFNHQKELVIIEYNGKIYNNLASRPQYLREKDKIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A1I9LW05_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW05_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.230e-34
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
            MKINFFLLSL +NG+KYK+YM +P QI DLL+FFN+QKELIIIEYNGKIYNN  TR QYL+QKD IEIITIVGGG
Sbjct:    1 MKINFFLLSLSLNGIKYKLYMTKPSQIFDLLKFFNYQKELIIIEYNGKIYNNSITRTQYLKQKDIIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A7T8JJY9_SCYLO (Ycf40 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JJY9_SCYLO)

HSP 1 Score: 115 bits (288), Expect = 3.520e-32
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLA--TRPQYLRQKDKIEIITIVGGG 225
            MKINFFLLSL VNGL YK+Y+N+P QI DLLEFFN+QKEL+IIEYNGKIYNNL    R  YL++KD IEIITIVGGG
Sbjct:    4 MKINFFLLSLSVNGLTYKVYLNKPSQIFDLLEFFNYQKELVIIEYNGKIYNNLELHNRLSYLKKKDNIEIITIVGGG 80          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A5A4MNY4_9PHAE (Uncharacterized protein n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MNY4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.870e-31
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLA--TRPQYLRQKDKIEIITIVGGG 225
            MKI FFLLSL VNGL+YKIYMN+P QI DLLEFFN QKEL+IIEYNGKIYN+L    R  YL+Q+D IEIITIVGGG
Sbjct:    1 MKIKFFLLSLSVNGLRYKIYMNKPSQIFDLLEFFNRQKELVIIEYNGKIYNDLELHNRLSYLKQRDNIEIITIVGGG 77          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A8F0JZ90_9PHAE (Uncharacterized protein n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0JZ90_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 5.070e-31
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
            MKI FFLL + +NG +YKIYM +P Q+ DLLEFFN+QKELIIIE+NGKI+N L   PQYLRQKDKIEIITIVGGG
Sbjct:    1 MKITFFLLLVSLNGCEYKIYMTQPSQVLDLLEFFNYQKELIIIEHNGKIHNYLNKTPQYLRQKDKIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A0S0GBR2_COSCS (Uncharacterized protein n=4 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBR2_COSCS)

HSP 1 Score: 111 bits (278), Expect = 1.020e-30
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
            MKINFFLL + +NG +YK+YM +P Q+ DL+EFFNHQK+L+IIE+NGKI N L   PQY+RQKDKIE+ITIVGGG
Sbjct:    1 MKINFFLLLVSLNGCEYKVYMTQPSQVFDLIEFFNHQKDLVIIEHNGKIQNYLNKTPQYVRQKDKIEVITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A6B7F283_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7F283_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.020e-30
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
            MKI FFLLSL +NG +YKIYMN PLQI DLL+F ++QKEL+IIEYNGKIYNN   + +YL+ KD+IEIITIVGGG
Sbjct:    1 MKIKFFLLSLSLNGFRYKIYMNRPLQIFDLLQFLSYQKELVIIEYNGKIYNNFNNQIKYLQHKDRIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A8F0F7V5_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7V5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.940e-30
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
            MKINFFLLSL +NG +YKIYM +  QI DLLEFFN+QKEL+IIE+NGKIYNN   + QY++Q D+IEIITIVGGG
Sbjct:    1 MKINFFLLSLSLNGSRYKIYMGQNSQIFDLLEFFNYQKELVIIEHNGKIYNNSNIKSQYIKQNDRIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A5B9RD79_9PHAE (Ycf40 protein n=14 Tax=Laminariales TaxID=2886 RepID=A0A5B9RD79_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.200e-29
Identity = 52/75 (69.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
            MKIN FLL + +NG +YK+YM +P Q+ DLLEFFNHQKEL+II++NGKI+N L    QYLR+KDKIEIITIVGGG
Sbjct:    1 MKINLFLLLVSLNGCEYKVYMTQPSQVFDLLEFFNHQKELVIIQHNGKIHNYLNKNSQYLREKDKIEIITIVGGG 75          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Match: A0A8E8PDZ4_9PHAE (ThiS n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8E8PDZ4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.200e-29
Identity = 50/75 (66.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIYNNLATRPQYLRQKDKIEIITIVGGG 225
            MKINFFLL + +NG +YK+YM +P Q+ DLLEFFNHQKEL+II++NGKI+N+L    +Y++QKDKIE+ITIVGGG
Sbjct:    1 MKINFFLLLVSLNGCEYKVYMTQPSQVFDLLEFFNHQKELVIIQHNGKIHNDLNKTQKYVKQKDKIEVITIVGGG 75          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J708_ECTSI1.890e-4494.67Uncharacterized protein ycf40 n=1 Tax=Ectocarpus s... [more]
A0A1I9LW05_9PHAE2.230e-3480.00Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A7T8JJY9_SCYLO3.520e-3276.62Ycf40 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0... [more]
A0A5A4MNY4_9PHAE1.870e-3176.62Uncharacterized protein n=1 Tax=Hapterophycus cana... [more]
A0A8F0JZ90_9PHAE5.070e-3174.67Uncharacterized protein n=1 Tax=Egregia menziesii ... [more]
A0A0S0GBR2_COSCS1.020e-3069.33Uncharacterized protein n=4 Tax=Laminariales TaxID... [more]
A0A6B7F283_9PHAE1.020e-3072.00Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A8F0F7V5_9PHAE2.940e-3072.00Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A5B9RD79_9PHAE1.200e-2969.33Ycf40 protein n=14 Tax=Laminariales TaxID=2886 Rep... [more]
A0A8E8PDZ4_9PHAE1.200e-2966.67ThiS n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8E8PDZ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11797contigE-siliculosus-1a_F_contig11797:1468..1695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size228
Model size228
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.9728565-CDS-E-siliculosus-1a_F_contig11797:1467..16951622927698.9728565-CDS-E-siliculosus-1a_F_contig11797:1467..1695Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11797 1468..1695 -
1696318643.2938137-CDS-E-siliculosus-1a_F_contig11797:1467..16951696318643.2938137-CDS-E-siliculosus-1a_F_contig11797:1467..1695Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11797 1468..1695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11797.1154.1prot_E-siliculosus-1a_F_contig11797.1154.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11797 1468..1695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11797.1154.1

>prot_E-siliculosus-1a_F_contig11797.1154.1 ID=prot_E-siliculosus-1a_F_contig11797.1154.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp
MKINFFLLSLYVNGLKYKIYMNEPLQISDLLEFFNHQKELIIIEYNGKIY
NNLATRPQYLRQKDKIEIITIVGGG*
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mRNA from alignment at E-siliculosus-1a_F_contig11797:1468..1695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11797.1154.1 ID=mRNA_E-siliculosus-1a_F_contig11797.1154.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11797:1468..1695- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAATAAATTTTTTCCTTTTGTCATTATACGTAAATGGTTTAAAATA TAAAATCTACATGAATGAGCCTCTACAAATAAGTGATTTATTAGAATTCT TTAATCATCAAAAAGAACTTATAATAATTGAATATAATGGTAAAATCTAT AATAATTTAGCTACTCGACCGCAATATTTAAGGCAAAAAGATAAAATAGA AATTATTACAATTGTAGGTGGCGGTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11797:1468..1695-

>mRNA_E-siliculosus-1a_F_contig11797.1154.1 ID=mRNA_E-siliculosus-1a_F_contig11797.1154.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11797:1468..1695- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAATAAATTTTTTCCTTTTGTCATTATACGTAAATGGTTTAAAATA
TAAAATCTACATGAATGAGCCTCTACAAATAAGTGATTTATTAGAATTCT
TTAATCATCAAAAAGAACTTATAATAATTGAATATAATGGTAAAATCTAT
AATAATTTAGCTACTCGACCGCAATATTTAAGGCAAAAAGATAAAATAGA
AATTATTACAATTGTAGGTGGCGGTTAAATGAAAATAAATTTTTTCCTTT
TGTCATTATACGTAAATGGTTTAAAATATAAAATCTACATGAATGAGCCT
CTACAAATAAGTGATTTATTAGAATTCTTTAATCATCAAAAAGAACTTAT
AATAATTGAATATAATGGTAAAATCTATAATAATTTAGCTACTCGACCGC
AATATTTAAGGCAAAAAGATAAAATAGAAATTATTACAATTGTAGGTGGC
GGTTAA
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