mRNA_E-siliculosus-1a_F_contig11793.1152.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11793.1152.1
Unique NamemRNA_E-siliculosus-1a_F_contig11793.1152.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11793.1152.1 vs. uniprot
Match: D8LHT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT0_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.460e-22
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 GVREWKQGQPGDLREIGLLPFPVDDVMCPGETKALHLYEVR 123
            GVREWKQGQPGDLREIGLLPFPVDDVMCPGETKALHLYE R
Sbjct:   47 GVREWKQGQPGDLREIGLLPFPVDDVMCPGETKALHLYEAR 87
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BLAST of mRNA_E-siliculosus-1a_F_contig11793.1152.1 vs. uniprot
Match: A0A6H5KVI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.290e-20
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 GVREWKQGQPGDLREIGLLPFPVDDVMCPGETKALHLYEVR 123
            GVREWKQGQPGDLREIGLLPFP+DDVMCPGETKALHLYE R
Sbjct:   53 GVREWKQGQPGDLREIGLLPFPIDDVMCPGETKALHLYEAR 93
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BLAST of mRNA_E-siliculosus-1a_F_contig11793.1152.1 vs. uniprot
Match: L1I495_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I495_GUITC)

HSP 1 Score: 48.9 bits (115), Expect = 4.460e-6
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 GVREWKQG-QPGDLREIGLLPFPVDDVMCPGETKALHLYEVR 123
            G  EW++   P     +G +PFP++D++ PGETK LHLYE R
Sbjct:    1 GQAEWRETFDPYGQGRLGCMPFPIEDMILPGETKKLHLYEAR 42
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BLAST of mRNA_E-siliculosus-1a_F_contig11793.1152.1 vs. uniprot
Match: A0A7S3WM88_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WM88_9SPIT)

HSP 1 Score: 50.1 bits (118), Expect = 8.470e-6
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 GVREW-KQGQPGDLREIGLLPFPVDDVMCPGETKALHLYEVRVPRL 135
            G+ EW K G   + RE+GLLPF +++ + PGETK +HLYE R  +L
Sbjct:   44 GLNEWLKLGD--EPRELGLLPFSIEEALLPGETKEVHLYEARFLKL 87
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BLAST of mRNA_E-siliculosus-1a_F_contig11793.1152.1 vs. uniprot
Match: A0A7S2BRE0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BRE0_9EUKA)

HSP 1 Score: 47.4 bits (111), Expect = 3.330e-5
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:   46 IGLLPFPVDDVMCPGETKALHLYEVR 123
            +GLLPFPVD+ + PGETK +HLYE R
Sbjct:   47 LGLLPFPVDEALLPGETKQVHLYEAR 72
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BLAST of mRNA_E-siliculosus-1a_F_contig11793.1152.1 vs. uniprot
Match: A0A7S0TK28_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TK28_HEMAN)

HSP 1 Score: 47.4 bits (111), Expect = 7.640e-5
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   10 EWKQGQPGDLREIGLLPFPVDDVMCPGETKALHLYEVRVPRL 135
            EW  G   +   +G LPFP+ D++ PGETK+LHL+E R  +L
Sbjct:   80 EW--GSDAEGMTLGCLPFPIQDLLLPGETKSLHLFEARFLKL 119
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BLAST of mRNA_E-siliculosus-1a_F_contig11793.1152.1 vs. uniprot
Match: M1CJF0_SOLTU (ATP-dependent peptidase n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1CJF0_SOLTU)

HSP 1 Score: 45.8 bits (107), Expect = 9.880e-5
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 1 
Query:   43 EIGLLPFPVDDVMCPGETKALHLYEVR 123
            E+ LLPFP+D V+ P ETK LHLYE R
Sbjct:   51 ELPLLPFPIDQVLVPSETKTLHLYEAR 77
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11793.1152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHT0_ECTSI2.460e-2297.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVI4_9PHAE1.290e-2095.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L1I495_GUITC4.460e-647.62Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S3WM88_9SPIT8.470e-650.00Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2BRE0_9EUKA3.330e-569.23Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0TK28_HEMAN7.640e-547.62Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
M1CJF0_SOLTU9.880e-566.67ATP-dependent peptidase n=1 Tax=Solanum tuberosum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11793contigE-siliculosus-1a_F_contig11793:65..202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size138
Model size138
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 orthologEc-18_000330.1
Ec32 ortholog descriptionconserved unknown protein
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.8745873-CDS-E-siliculosus-1a_F_contig11793:64..2021622927698.8745873-CDS-E-siliculosus-1a_F_contig11793:64..202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11793 65..202 -
1696318643.2738001-CDS-E-siliculosus-1a_F_contig11793:64..2021696318643.2738001-CDS-E-siliculosus-1a_F_contig11793:64..202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11793 65..202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11793.1152.1prot_E-siliculosus-1a_F_contig11793.1152.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11793 65..202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11793.1152.1

>prot_E-siliculosus-1a_F_contig11793.1152.1 ID=prot_E-siliculosus-1a_F_contig11793.1152.1|Name=mRNA_E-siliculosus-1a_F_contig11793.1152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=46bp
GVREWKQGQPGDLREIGLLPFPVDDVMCPGETKALHLYEVRVPRL*
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mRNA from alignment at E-siliculosus-1a_F_contig11793:65..202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11793.1152.1 ID=mRNA_E-siliculosus-1a_F_contig11793.1152.1|Name=mRNA_E-siliculosus-1a_F_contig11793.1152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=138bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11793:65..202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGTGCGAGAGTGGAAGCAGGGGCAGCCTGGAGACCTCAGAGAGATCGG
ACTCCTTCCGTTCCCGGTCGATGACGTCATGTGTCCCGGAGAGACCAAGG
CGTTGCACCTATACGAGGTGCGTGTGCCACGGCTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11793:65..202-

>mRNA_E-siliculosus-1a_F_contig11793.1152.1 ID=mRNA_E-siliculosus-1a_F_contig11793.1152.1|Name=mRNA_E-siliculosus-1a_F_contig11793.1152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11793:65..202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGTGCGAGAGTGGAAGCAGGGGCAGCCTGGAGACCTCAGAGAGATCGG
ACTCCTTCCGTTCCCGGTCGATGACGTCATGTGTCCCGGAGAGACCAAGG
CGTTGCACCTATACGAGGTGCGTGTGCCACGGCTGTAGGGGGTGCGAGAG
TGGAAGCAGGGGCAGCCTGGAGACCTCAGAGAGATCGGACTCCTTCCGTT
CCCGGTCGATGACGTCATGTGTCCCGGAGAGACCAAGGCGTTGCACCTAT
ACGAGGTGCGTGTGCCACGGCTGTAG
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