mRNA_E-siliculosus-1a_F_contig1179.1149.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1179.1149.1
Unique NamemRNA_E-siliculosus-1a_F_contig1179.1149.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: D7G6H6_ECTSI (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6H6_ECTSI)

HSP 1 Score: 480 bits (1235), Expect = 4.520e-171
Identity = 237/247 (95.95%), Postives = 240/247 (97.17%), Query Frame = 1 
Query:    1 MRTCALLAFLSVVGCDGFATPPSSSRIVAPTMSHGQRGSGPVSRQALLKTGAVGLASLGLWFAAGSDAGRPRAAFAAPRVGSGGPPFSKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLPVKPSFKP 741
            MRTCALLAFLSV GCDGF TPPSSSR V PTMSHGQRGSGPVSRQALLKTGA GLASLGLWFAAGSD GRP+AAFAAPRVGSGGPPFSKSGYDLDPLT EEV++RVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLPVKPSFKP
Sbjct:    1 MRTCALLAFLSVAGCDGFTTPPSSSRSVTPTMSHGQRGSGPVSRQALLKTGAAGLASLGLWFAAGSDVGRPQAAFAAPRVGSGGPPFSKSGYDLDPLTAEEVDARVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLPVKPSFKP 247
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: A0A835YHL4_9STRA (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHL4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 4.070e-70
Identity = 106/161 (65.84%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:  259 FSKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAAS-MPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLPVKPSFK 738
             SKSGYD+ P+  +EVE   +K  ++Q+ VL +AGTE    G TVNGY    K EG W+SAVSG+PLFSS  KY+SGTGWPSFY PID +H+IERVDPKD +S +P+F QR+EVLDRKSGTHLGHVF DGPKPTG RYCMN ASM F+PK EPLPV+P  K
Sbjct:   41 ISKSGYDVTPMPRDEVEKIAEKYNDIQRKVLLKAGTEFAGTGVTVNGYPHSTKEEGVWISAVSGIPLFSSSAKYESGTGWPSFYEPIDKDHIIERVDPKDKSSGLPQFFQRMEVLDRKSGTHLGHVFPDGPKPTGLRYCMNTASMIFVPKGEPLPVQPVKK 201
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: A0A7S4D7B1_HETAK (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7B1_HETAK)

HSP 1 Score: 211 bits (538), Expect = 3.390e-65
Identity = 103/152 (67.76%), Postives = 118/152 (77.63%), Query Frame = 1 
Query:  259 FSKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAAS-MPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEE 711
             SKSGYD+ P+T EEV   V  L  L K VL QAGTER F GKTVNGY    K  G WVSA SGVPLFSS  KYDSGTGWPSF+AP DP+HV+ER DPKDAA+ +P FL+R EVLDR+S TH+GHVFNDGP+PTG RYCMNAA++ F+P+ E
Sbjct:   76 ISKSGYDVSPMTKEEVLEAVKDLPGLSKNVLLQAGTERAFTGKTVNGYPHDNKKAGVWVSAASGVPLFSSAQKYDSGTGWPSFWAPYDPDHVLERPDPKDAANNLPGFLRRTEVLDRRSRTHVGHVFNDGPRPTGLRYCMNAAALRFVPEAE 227
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: A0A8J9RWM2_9CHLO (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RWM2_9CHLO)

HSP 1 Score: 201 bits (512), Expect = 3.580e-61
Identity = 95/154 (61.69%), Postives = 116/154 (75.32%), Query Frame = 1 
Query:  259 FSKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLP 720
             SKSGYD+ PLT E+++    K+ +  + +  +AGTER F GKTVNGY    K EG WVSA+ G+PLFSS+TK+DSGTGWPSFYAPIDPEHVIE  D     S+P F+ R EV+D +SG HLGHVFNDGP+PTGKRYCMNA ++ FIPK E +P
Sbjct:   91 ISKSGYDITPLTKEQLDKEAAKVPQATRHIALEAGTERAFTGKTVNGYPHDNKKEGLWVSAIGGLPLFSSETKFDSGTGWPSFYAPIDPEHVIEETD----NSIP-FMPRTEVIDARSGAHLGHVFNDGPRPTGKRYCMNAGALKFIPKGEDVP 239
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: I0ZA13_COCSC (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZA13_COCSC)

HSP 1 Score: 197 bits (500), Expect = 1.040e-59
Identity = 93/155 (60.00%), Postives = 116/155 (74.84%), Query Frame = 1 
Query:  262 SKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLPVK 726
            SK GYD+ PLT  +++    K+    + +  +AGTER F GKT+NGY+   K EG WVSA+ G+PLFSSDTK+DSGTGWPSFYAPIDPEHVIE  D    +S+P F+ R EV+D +SG HLGHVFNDGP+PTGKRYCMNA ++ FIPK E +P +
Sbjct:   66 SKLGYDITPLTQGKLKEEAAKVDANTRYIALEAGTERAFTGKTINGYSHDNKKEGVWVSAIGGLPLFSSDTKFDSGTGWPSFYAPIDPEHVIEVKD----SSIP-FMPRTEVIDARSGAHLGHVFNDGPRPTGKRYCMNAGALKFIPKGEDMPAE 215
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: A0A0G4IF36_9ALVE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IF36_9ALVE)

HSP 1 Score: 196 bits (498), Expect = 2.580e-59
Identity = 97/149 (65.10%), Postives = 112/149 (75.17%), Query Frame = 1 
Query:  259 FSKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPK 705
             SK G+D+ P+T EE+E     LT LQ+ V+  +GTER F G+TVNGY    K EG WVSAVSG+PLFSS  KYDSGTGWPSF+ PIDP+HVIER DP D   +P  L R+EVLD KSG HLGHVFNDGP PT KRYCMNAA++ FIPK
Sbjct:   76 MSKLGFDVTPMTKEEIEQASVPLTPLQRQVVFYSGTERAFTGQTVNGYPWDTKEEGVWVSAVSGLPLFSSRAKYDSGTGWPSFFMPIDPQHVIERPDPNDL-KVPG-LARIEVLDAKSGAHLGHVFNDGPAPTYKRYCMNAAALKFIPK 222
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: A0A7S1UG56_9STRA (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG56_9STRA)

HSP 1 Score: 194 bits (494), Expect = 4.310e-59
Identity = 107/196 (54.59%), Postives = 130/196 (66.33%), Query Frame = 1 
Query:  121 PVSRQALLKTGAVGLASLGLWFAAGSDAGRPRAAFAAPRVGSGGPPFSKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKE 708
            PVSR   +KTGA   A+ G  +  G     PRA+FA           S+SG D+ P++ EE+ +    L +  + VL  A TER F GKTVNGY+   K++G W SA+S VPLFSS+ KYDSGTGWPSF  PID +HVIER+DP D   +P+FLQRVEVLD KSG HLGHVF DGP PT KRYCMNAA++ F P E
Sbjct:   21 PVSRVDAVKTGAA--AAFGAAWLVG-----PRASFAK---------TSRSGVDVTPMSKEEIAAAAKDLPDFSREVLLNARTERSFTGKTVNGYDWSTKSKGVWKSAISDVPLFSSNDKYDSGTGWPSFSRPIDKDHVIERIDPGDKG-LPQFLQRVEVLDAKSGGHLGHVFTDGPPPTFKRYCMNAAALKFEPAE 199
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: A0A7R9YCP1_9STRA (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCP1_9STRA)

HSP 1 Score: 194 bits (493), Expect = 5.380e-59
Identity = 94/147 (63.95%), Postives = 108/147 (73.47%), Query Frame = 1 
Query:  262 SKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIP 702
            SK G D+ P+T +E+E     L E  K VL QA TER F GKT+NGY    K +G W SA+S VP+FSSD KYDSGTGWPSF  PID +HVIER+DP D   +PKFLQR+EVLD KSG HLGHVFNDGP PT KRYCMNAA++ F P
Sbjct:   48 SKMGVDVTPMTQDEIEKAASSLPEFSKEVLLQARTERSFTGKTINGYPWDTKEKGVWKSALSDVPVFSSDAKYDSGTGWPSFSRPIDKDHVIERLDPGDMG-LPKFLQRIEVLDAKSGGHLGHVFNDGPPPTFKRYCMNAAALKFEP 193
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: A0A835YAI0_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YAI0_9CHLO)

HSP 1 Score: 194 bits (493), Expect = 1.040e-58
Identity = 95/165 (57.58%), Postives = 123/165 (74.55%), Query Frame = 1 
Query:  232 PRVGSGGPPFSKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLPVK 726
            PR GS     S+SGYD+ PLT EE + R   LT  ++ V+ QAGTERP+ G+T NG++   K  G +VSAV G+PLFSS TK++SG+GWPSFYAPIDPEHVIE +D     S+P F+ R+EV+D +SG HLGHVFNDGP PT KRYC+NAA++ F+P++E LP +
Sbjct:   50 PREGSTPRKISRSGYDVTPLTKEERDERAAALTPFEQYVVLQAGTERPWTGQTTNGFSHDNKRRGVYVSAVGGLPLFSSATKFESGSGWPSFYAPIDPEHVIEILD----TSIP-FMPRMEVVDARSGAHLGHVFNDGPSPTFKRYCINAAALKFVPEDEELPAE 209
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BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Match: A0A0G4GHH7_VITBC (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GHH7_VITBC)

HSP 1 Score: 193 bits (490), Expect = 4.580e-58
Identity = 98/158 (62.03%), Postives = 111/158 (70.25%), Query Frame = 1 
Query:  253 PPFSKSGYDLDPLTPEEVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLPVK 726
            P  SKSGYD+ P+T EEV+     LT  Q  +  +AGTE  F G+TVNGY    K +G WV A+SG+PLFSSD KYDSGTGW SF  P+DP HVIER DPKD A  P F +R EVLD KSG HLGHVF+DGP P  KRYCMNAASM F+P E   PVK
Sbjct:   74 PKISKSGYDVTPMTDEEVQKAAQGLTSKQYDINLKAGTEMAFTGETVNGYKWNTKEKGMWVGAISGLPLFSSDDKYDSGTGWLSFLKPVDPMHVIERKDPKDMAFGP-FERRTEVLDAKSGAHLGHVFDDGPPPLKKRYCMNAASMKFVPAE---PVK 227
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6H6_ECTSI4.520e-17195.95Peptide-methionine (R)-S-oxide reductase n=2 Tax=E... [more]
A0A835YHL4_9STRA4.070e-7065.84Peptide-methionine (R)-S-oxide reductase n=1 Tax=T... [more]
A0A7S4D7B1_HETAK3.390e-6567.76Peptide-methionine (R)-S-oxide reductase n=1 Tax=H... [more]
A0A8J9RWM2_9CHLO3.580e-6161.69Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
I0ZA13_COCSC1.040e-5960.00Peptide-methionine (R)-S-oxide reductase n=1 Tax=C... [more]
A0A0G4IF36_9ALVE2.580e-5965.10Peptide-methionine (R)-S-oxide reductase n=1 Tax=C... [more]
A0A7S1UG56_9STRA4.310e-5954.59Peptide-methionine (R)-S-oxide reductase n=1 Tax=P... [more]
A0A7R9YCP1_9STRA5.380e-5963.95Peptide-methionine (R)-S-oxide reductase n=1 Tax=P... [more]
A0A835YAI0_9CHLO1.040e-5857.58Peptide-methionine (R)-S-oxide reductase n=1 Tax=E... [more]
A0A0G4GHH7_VITBC4.580e-5862.03Peptide-methionine (R)-S-oxide reductase n=2 Tax=V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1179contigE-siliculosus-1a_F_contig1179:18947..23683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size744
Model size744
Exons6
Ec32 orthologEc-05_006220.1
Ec32 ortholog descriptionMethionine-R-sulfoxide reductase
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC1.8.4.12
EggNOG OGsCOG0229@1,KOG0856@2759
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0030091,GO:0033554,GO:0033743,GO:0034599,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
KEGG koko:K07305
Seed eggNOG ortholog2880.D7G6H6
Seed ortholog evalue9.1e-133
Seed ortholog score479.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1179.1149.1prot_E-siliculosus-1a_F_contig1179.1149.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1179 18947..23683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.6946728-CDS-E-siliculosus-1a_F_contig1179:18946..190591622927698.6946728-CDS-E-siliculosus-1a_F_contig1179:18946..19059Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 18947..19059 -
1696318643.188124-CDS-E-siliculosus-1a_F_contig1179:18946..190591696318643.188124-CDS-E-siliculosus-1a_F_contig1179:18946..19059Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 18947..19059 -
1622927698.7133672-CDS-E-siliculosus-1a_F_contig1179:19596..197241622927698.7133672-CDS-E-siliculosus-1a_F_contig1179:19596..19724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 19597..19724 -
1696318643.200692-CDS-E-siliculosus-1a_F_contig1179:19596..197241696318643.200692-CDS-E-siliculosus-1a_F_contig1179:19596..19724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 19597..19724 -
1622927698.725053-CDS-E-siliculosus-1a_F_contig1179:20705..208511622927698.725053-CDS-E-siliculosus-1a_F_contig1179:20705..20851Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 20706..20851 -
1696318643.210995-CDS-E-siliculosus-1a_F_contig1179:20705..208511696318643.210995-CDS-E-siliculosus-1a_F_contig1179:20705..20851Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 20706..20851 -
1622927698.7352843-CDS-E-siliculosus-1a_F_contig1179:22072..221821622927698.7352843-CDS-E-siliculosus-1a_F_contig1179:22072..22182Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 22073..22182 -
1696318643.221904-CDS-E-siliculosus-1a_F_contig1179:22072..221821696318643.221904-CDS-E-siliculosus-1a_F_contig1179:22072..22182Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 22073..22182 -
1622927698.7466557-CDS-E-siliculosus-1a_F_contig1179:22631..228381622927698.7466557-CDS-E-siliculosus-1a_F_contig1179:22631..22838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 22632..22838 -
1696318643.229326-CDS-E-siliculosus-1a_F_contig1179:22631..228381696318643.229326-CDS-E-siliculosus-1a_F_contig1179:22631..22838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 22632..22838 -
1622927698.761908-CDS-E-siliculosus-1a_F_contig1179:23643..236831622927698.761908-CDS-E-siliculosus-1a_F_contig1179:23643..23683Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 23644..23683 -
1696318643.2367601-CDS-E-siliculosus-1a_F_contig1179:23643..236831696318643.2367601-CDS-E-siliculosus-1a_F_contig1179:23643..23683Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1179 23644..23683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1179.1149.1

>prot_E-siliculosus-1a_F_contig1179.1149.1 ID=prot_E-siliculosus-1a_F_contig1179.1149.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1149.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=248bp
MRTCALLAFLSVVGCDGFATPPSSSRIVAPTMSHGQRGSGPVSRQALLKT
GAVGLASLGLWFAAGSDAGRPRAAFAAPRVGSGGPPFSKSGYDLDPLTPE
EVESRVDKLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSG
VPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVL
DRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEEPLPVKPSFKP*
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mRNA from alignment at E-siliculosus-1a_F_contig1179:18947..23683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1179.1149.1 ID=mRNA_E-siliculosus-1a_F_contig1179.1149.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1149.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4737bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1179:18947..23683- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGACCTGTGCACTGCTCGCATTTCTCTCCGTGGTAGGTGAGTCTCA
GCCTGGTTGCCCATTGTGGATTATCTACGACGTGGATGGCGGATAGGTTT
CACAGCTGTCCCTACGCATCGTCTGCCGTTTGTTGCATGAGTCATGATTT
CTTAGCTGGGGCCAAGGCCAAGAGAGAGGCACTGTTTACCTCTCCCTCCT
GCCCCTCAGCTACAAGTAGAGCAGTGTATTCGATCGCCGATTGCCCTCGC
CGGACATTCCCTCTACACGGCCGGCGGTCAGCGGGAAAACCAGGCGATTT
TGACGACGATACTCGAATATCCTAAATCAGCAATTCCGCCGCGTCGCGAG
AGCACCACGTTGGTACTCCTGTACACCGGTACACATCGCCGTACTACTTC
TTTTCTCTATGCGTCCATTGCCACGTGGACTGCTGTGCGTTGGCCCTTCA
GTCTGGTCCGTAGTCACGTCACGTGCACAGAGTTCCCGAGCGCGTCGTGC
GTTCTCTGTGCTACTGGCACCACAAGGGACACCAGCAAGTGTTTTGCCGG
CGGCAGGGAGCTACATGTACGCCTTCCGGCCGCAGTAGCTCCGCGACGTT
TTTTAAATTCTCTCGAGTGAGTGGGTTTGGTTCTCGCCGCTCCCGACGTG
GTTTGGCCTCCTAGACCACAGGTAAGCTGTTCACTGCCGTACCGCCCTCT
CCACCTATGGTTCATGCAATCATGTGCTACAAGCGCCATCGCCACAGCCG
CAGTTACAGAACCGCACGTGTGAACAATCCAGACCGCCGACCGCTGCCGA
CACACGGAGACGCTGCACCCTTCGCCAAACGAACCACCCTTGCAGGTTGC
GACGGGTTCGCAACACCGCCGTCTTCCTCGAGAATCGTAGCCCCAACCAT
GTCCCACGGGCAGCGGGGTAGTGGACCCGTGTCGCGCCAGGCGCTGCTCA
AGACCGGAGCAGTCGGCTTGGCCTCCCTAGGGCTGTGGTTCGCGGCGGGC
TCCGACGCGGGAAGGCCGCGAGCCGCCTTTGCAGCACCCAGGGTGGGAAG
CGGTAAGAACCTACGAGAGAGATTTGGCAAACAACGGGGGATCATGCTTT
GCATGCCTTAGCGATTAGACCAATGATCACTCGTCCGAGAGGATGGGGAG
CATTCCCACAGGACCGACGGCCAATCGCCCGTTCCTACTTTGCCATTGTT
TTCTCTATCCCGTCTATTATATCAATATCACTCCCCGCCTTTGCGGCCCA
CTTCCTATACCACCGGCCTGTGGCAGGTATACATGCTTCTCTCCCGTCAT
CGCGCCCCAAAGGCCCGACTACAGCGCCTCGCTGCAACTCTCAGTCTTTG
GGGATTATCTTCTCTCTGCACAGACGGGACCAAAGTGCATCTAACGTTGT
GTACGGTTCCGTTGCATCGCTCTGTTGATTTCCCCCGCCGCCGCCAATTA
TACATTTCAAACCGATGACTATTTTTGCATTACCTGTCGCGTTGTTTTCA
GGAGGGCCGCCGTTTTCTAAATCGGGATATGACCTTGATCCGTTGACCCC
TGAGGAGGTGGAGTCCAGGGTAGACAAACTGACGGAGCTGCAGAAGGTCG
TCCTGACCCAGGTAAGTGAATTCTTGTGTTGGCGCATGTGCTTGTCCCTT
TTTTTGGGCTCTACCCTCCACACACCTAACCGGGTCGCTGTTTGGACTAT
CTTTTAGCGAGGTCCCCGTGGGGATTGCTGAAGACCGTTGGTAACTGTCG
CTGATGGTATTGAGTGGCACCGAGCGGTGCCTTTGGTGGCGCGCGGCGTC
GGCGCAGCTGGATGGCGAGCGTGGCCCTGGAGCGCCGGCAAGCCGCGAAC
TGTTAGTACTATCTGAGTTGGCAGACCGAGGCACGTAACGCTTCCAAACA
TGTAACAAAACACGTTCCTTCCTGTCGGGGGCTCTCGCCCTGTACTAGAA
ACGGAGATATAGGGAGTTTCGTGTAAGTATGGTGGGTATCAGTTTGTAGG
AGGGCGATCCCCCTTCTACCCTGCATTGGCTGGCTTGCCCTGGTCACTCG
TTTACAACCGAGGTCTTGAATCAACCGTCCTTCGCAGTTTTGGGCGATAA
TCACACACTACTATTTAATAATGCTCCCTAGTGGGTCCTTATCGTCAGAG
GATGCGAATGAAGGTTGACTCAAGACCTTGTTTATCCACGGGTGAGCAGG
GCATGCTAACGTATGCACTGCCGAAGGGGGATTGCCCTCCTACAAATACA
TACCACCCAATGACACACGAAACCCCCTAAGGACCCCCGCAGATTCGTAC
CTGCAGTACGATAGTGCTGAGTACAACTAACACAGGCATCGCACCCTATC
GCGAAGTCAAGAGCTTCTGCCGGGCGAACGGCGGCATGATTCAAAACTAA
ATCCCATCAGATGCCTCGTTTATCTTGTTTCGTTCAATGGCGGATCAAAA
GCAGCGGCGATCGGCCGAATTCGGGTTCGTTCGTGTTCCCGCTCGATGGG
CCCTACATTTTATAGTACACAATCGTCGCCAAACAGTTTGCAGTCCGCCA
CCCATCAAGCAGCTCGGATGAACTGGTTGTGAAAAGAGGTAATGCCCCTG
GAGGTACGTTTGTTACAAACCAATCGCTGCCGTTTGTTGTTGGTCTTGTT
GCTTGCAACTTAAACCTACCAAGCTTGGAATGAGAGTACAAAATTTGACA
GCTCCTCACTTGTAGGATGACACGTGCAGTACGTCATTTTGTGGTTTATC
GTTTTGGTTCAGATTTCCCCTCTATTATGTCGTGTCGTGCCCCCATGCTG
AAACGGTGTTCTCTTGTCGCTGCTCGATGTAGGCGGGTACGGAGCGGCCG
TTTCAGGGCAAGACGGTGAACGGGTATAACGGTGGCATCAAGGCGGAGGG
TACCTGGGTCAGTGCCGTATCGGGGGTCCCCCTCTTTAGCTCCGACACCA
AGTACGACAGCGGCACCGGCTGGCCGAGGTGCGTCTGTGTGTGTGTTAAG
TAATATTGTATATGCTTTTATTGTTTTTGTGATATTTTATTAGTGTTGTT
GTTGTGATACCTTTATTGTCTATTTTTTTTATTGCATCGACCGTGTGAAC
CGGTGACCAACGAAAAGACCTAACTCAGTGCAGCTGTGTGTACGTATGTC
TTTGTCGTTGGCATCGACGGCACCAACTGGCTGACCCATGAAAATACCTC
AGTCTTGTAGCGAGATGTCCAACGCGAACACGCTTTCTATTGAAAGGGTA
AGGATAAGGGTTCTACCGACACAGGGGGGCGCAGATGTGTGTCTTTTTTG
TTTGCGTTGACCGTGCCTACCGCGTGACGAATGAAAATGCGTCGGTCTCA
GTGCAGCTGAAAACACAAAATTATTCTAGAGGCCATGAGATGGGGCCCCG
TGAGGGGGCGTCATGAGAGAGGCTACGCTGCTCTCCGGAATATGGACAGG
CTTCGTTCACGTGTGTGTGTGTGCTTCTTTGGTATTTGCATCGCCGCGCT
ATCCAACTGTCCAAAGAAACGATGTCACCCTTGTAGATAGCGGTGACAAC
ACGGGAACACGCGTTCGCGTGAAGTGCGTGCGTTTTTTTTTGTTTTCCGT
TCCCGTCTCATCTTGTGGGTGAAAGGCGCATCTCCTGGCGATTCGCCGTG
CTGTTGGAAGCGGCTCGAAGGCCGCACCACCTGACCCACACAATCACAGA
ATGATTTCTTTTTCACTTTTTCTTTCGTGTGTGCGTGTTTTTTCTTTTCG
TTTGTCGTGCGTGCTCTCACGTGGCGGGACTGTTGAGTCCGCTCTCCACA
CCACCCTGTTGTATGTTTTTTGTTGTCACAAGGCGGGAGTTGTAGAGTCT
CAATTGCCAAGCATGAAACTCCCCCCTCCCCGAATCCATTCTTGCTAGCT
GTGGACCCCCTCCCCCCCTCCCCCCTTGCTGTCTGTGGACCTCCCTCTCG
GCGTGACAGCTTCTACGCGCCGATAGACCCCGAACACGTGATCGAGCGTG
TCGACCCGAAGGACGCGGCGAGCATGCCCAAGTTCTTGCAACGAGTCGAG
GTGCTGGACAGAAAGAGCGGGACCCACCTCGGACACGGTGAGCTGAGAGC
CGGGCGTGGCGACGAGACTAGGCCTGCAGTTGCCGCTGCCGTGATGGCAG
CTCGACGAGTAGCGCCATTGGCCTTGTTGCCTGCCTCAAGCTTTCCAGGA
CAACGAGTAACGTTAACAGCTCGAGATGGCAGACAGCGTGACACGCTCGA
TGACCAGAGCCGCCAAAGCATATCTGTGTAAAGAAGACGAGAGGTCTCTC
GCACCCGAACACGGCAAGGTAGATTGATTATGCCTCCCCGGGCTGGTGGA
AACCCAGCGGGGTTCTTCGGCCGGGTTTTGTTGGGACGCCCTGAGGTCTG
TGGTAGTGGTAGGTCGATGTGAGCATCCTTTGGTCTCCCCCTCCCTGGCA
CAATCACCACACCGTCTCAGCTCGAGTGTCTTTGCGGTGTTCTTCCCCGG
CCCACCCCCTGTGACGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGT
CCCCCTCCCTTTCCCTCTCCCGCTCTCTCTCTCCCTCTTCTTGCTCTATG
TCTTGCCTGGCGTTACCGTGACAGTTTTCAACGACGGCCCAAAACCCACC
GGCAAGCGCTATTGCATGAACGCGGCCTCTATGGCATTCATCCCCAAGGA
GGAGCCGTTGCCAGTTAAGCCATCCTTCAAGCCCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1179:18947..23683-

>mRNA_E-siliculosus-1a_F_contig1179.1149.1 ID=mRNA_E-siliculosus-1a_F_contig1179.1149.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1149.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1179:18947..23683- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGACCTGTGCACTGCTCGCATTTCTCTCCGTGGTAGATGAGGACCT
GTGCACTGCTCGCATTTCTCTCCGTGGTAGGTTGCGACGGGTTCGCAACA
CCGCCGTCTTCCTCGAGAATCGTAGCCCCAACCATGTCCCACGGGCAGCG
GGGTAGTGGACCCGTGTCGCGCCAGGCGCTGCTCAAGACCGGAGCAGTCG
GCTTGGCCTCCCTAGGGCTGTGGTTCGCGGCGGGCTCCGACGCGGGAAGG
CCGCGAGCCGCCTTTGCAGCACCCAGGGTGGGAAGCGGTTGCGACGGGTT
CGCAACACCGCCGTCTTCCTCGAGAATCGTAGCCCCAACCATGTCCCACG
GGCAGCGGGGTAGTGGACCCGTGTCGCGCCAGGCGCTGCTCAAGACCGGA
GCAGTCGGCTTGGCCTCCCTAGGGCTGTGGTTCGCGGCGGGCTCCGACGC
GGGAAGGCCGCGAGCCGCCTTTGCAGCACCCAGGGTGGGAAGCGGAGGGC
CGCCGTTTTCTAAATCGGGATATGACCTTGATCCGTTGACCCCTGAGGAG
GTGGAGTCCAGGGTAGACAAACTGACGGAGCTGCAGAAGGTCGTCCTGAC
CCAGGAGGGCCGCCGTTTTCTAAATCGGGATATGACCTTGATCCGTTGAC
CCCTGAGGAGGTGGAGTCCAGGGTAGACAAACTGACGGAGCTGCAGAAGG
TCGTCCTGACCCAGGCGGGTACGGAGCGGCCGTTTCAGGGCAAGACGGTG
AACGGGTATAACGGTGGCATCAAGGCGGAGGGTACCTGGGTCAGTGCCGT
ATCGGGGGTCCCCCTCTTTAGCTCCGACACCAAGTACGACAGCGGCACCG
GCTGGCCGAGGCGGGTACGGAGCGGCCGTTTCAGGGCAAGACGGTGAACG
GGTATAACGGTGGCATCAAGGCGGAGGGTACCTGGGTCAGTGCCGTATCG
GGGGTCCCCCTCTTTAGCTCCGACACCAAGTACGACAGCGGCACCGGCTG
GCCGAGCTTCTACGCGCCGATAGACCCCGAACACGTGATCGAGCGTGTCG
ACCCGAAGGACGCGGCGAGCATGCCCAAGTTCTTGCAACGAGTCGAGGTG
CTGGACAGAAAGAGCGGGACCCACCTCGGACACGCTTCTACGCGCCGATA
GACCCCGAACACGTGATCGAGCGTGTCGACCCGAAGGACGCGGCGAGCAT
GCCCAAGTTCTTGCAACGAGTCGAGGTGCTGGACAGAAAGAGCGGGACCC
ACCTCGGACACGTTTTCAACGACGGCCCAAAACCCACCGGCAAGCGCTAT
TGCATGAACGCGGCCTCTATGGCATTCATCCCCAAGGAGGAGCCGTTGCC
AGTTAAGCCATCCTTCAAGCCCTAATTTTCAACGACGGCCCAAAACCCAC
CGGCAAGCGCTATTGCATGAACGCGGCCTCTATGGCATTCATCCCCAAGG
AGGAGCCGTTGCCAGTTAAGCCATCCTTCAAGCCCTAA
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