mRNA_E-siliculosus-1a_F_contig1179.1148.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: D7G6H5_ECTSI (Cyclic nucleotide-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H5_ECTSI) HSP 1 Score: 1618 bits (4191), Expect = 0.000e+0 Identity = 831/896 (92.75%), Postives = 845/896 (94.31%), Query Frame = 1
Query: 61 MQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDRARKLGDHHRSFFEVLKAWFRERKGGFSYSGIPHRLRSPWYEYHTKFLFADAGGEAVWGNLESFLANHTAAGDDSVESWTGHLKHSRFDGGITGTIDKFSRTHDHAREKTHKPAGARGEEKHEAELSRSLKNPLAAGTSLDTPTGTTAAAATTEKAEAGAAPGSPTSQMASFEGEDHDQNDVRGRKGSMSKRMFQRAATFAQNAGISLSHTHDHGRHDKDGLNDQGIDKSELLEARIRFLQSLKAEYFKAKREGKLGSSGKRQRGREGDREGERLRVLTESINMAHDKVDKGGELDGWSELSGRFSSGWEIVFAKHMNWWPARPCIAIAIARRVSFQIDLAWNFLEAHHESNVKSLLADNGKVSDVQCQVNLENQKQIDSVEETINRLTIEAPMVMRSVKTRTAARIMVERFREATEMLAENGHLDEKEEEVLQHAVTNAEMMIAYHPNLEELPELSVVLEKIEFLHELTPEQRQRLIDVGACFYHEYVGEVRLMEMGKLGARGTKRSAERDFRFRGWFYVVRGQVEKEWRKEDGVTECMTHSSGLLFGITDAMLAVPHHAGYVTHGFSNLIVFDRHRLFQEAEQMPALDCSLWKSVASHCLRRNSRFHRYKLQSCHSLMDRAAFLSGGSGMMGQEMVEMEADDSLILVRGKILEVEGKVAIGPLGRADTSAAPVLLEPVGRGTGGKITLSGDYKAFKLPSDMLTNFARDERGRMLLQETRKRESMSLSTMNPMSSSNHRSSPNSPMTGDFVSEAAEAQQKSLAMSQAMEENLAAKFNLKNPVAARVGAQAAMKFMTGLKRRQEDGDGXXXXXXXXXXXXXXXXXXXXXGDVGDMYGE 2748
MQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDRARKLGDHHRSFFEVLKAWFRERKGGFSYSGIPHRLRSPWYEYHTKFLFADAGGEAVWGNLESFLANHTAAGDDSVESWTGHLKHSRFDGGITGTIDKFSRTHDHAREKTHKPAGARGEEKHEAE SRS NP+AAGTSLDTPTGTTAA EKAEAGAA GSPTS MASFEGEDHDQNDV+GRKGSMSKRMFQRAATFAQNAGISLSHTHDHGR DKDGLNDQGIDKSELLEAR RFLQSLKAEYFKAKREGKLGSSG LRVLTESINMAHDKVDKGGELDGWSELSGRFSSGWEIVFAK+MNWWPARPCIAIAIARRVSFQIDLAWNFLEAHHESNVKSLLADNGKVSDVQCQVNLENQKQIDSVEETINRLTIEAPMVMRSVKTRTAARIMVERFREATEMLAENGHLDEKEEEVLQHAVTNAEMMIAYHPNLEELPELSVVLEKIEFLHELTPEQRQRLIDVGACFYHEYVGEVRLMEMGKLGARGTKRSAERDFRFRGWFYVVRGQVEKEW+KEDG TECMTHSSGLLFGITDAMLAVPHHAGYVTHGFSNLIVFDRHRLFQEAEQMPALDCSLWKSVASHCLRRNSRFHRYKLQSCHSLMDRAAFLSGGSGMMGQEMVEMEADDSLILVRGKILEVEGKVAIGPLGRADTSAAPVL+EPVGRGTGGK+TLSGDYKAFKLPSDML NFA++ERGRMLLQ+TRKRESMS+STMNPMS++NHRSSPNSPMTGDFVSEAAEAQQ+SLAMSQAMEENLAAKFNLKNPVAARVGAQAAMKFMTGLKRRQED DG G GD+YGE
Sbjct: 1 MQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDRARKLGDHHRSFFEVLKAWFRERKGGFSYSGIPHRLRSPWYEYHTKFLFADAGGEAVWGNLESFLANHTAAGDDSVESWTGHLKHSRFDGGITGTIDKFSRTHDHAREKTHKPAGARGEEKHEAECSRSPNNPIAAGTSLDTPTGTTAATTXXEKAEAGAAAGSPTSPMASFEGEDHDQNDVKGRKGSMSKRMFQRAATFAQNAGISLSHTHDHGRQDKDGLNDQGIDKSELLEARFRFLQSLKAEYFKAKREGKLGSSG--------------LRVLTESINMAHDKVDKGGELDGWSELSGRFSSGWEIVFAKYMNWWPARPCIAIAIARRVSFQIDLAWNFLEAHHESNVKSLLADNGKVSDVQCQVNLENQKQIDSVEETINRLTIEAPMVMRSVKTRTAARIMVERFREATEMLAENGHLDEKEEEVLQHAVTNAEMMIAYHPNLEELPELSVVLEKIEFLHELTPEQRQRLIDVGACFYHEYVGEVRLMEMGKLGARGTKRSAERDFRFRGWFYVVRGQVEKEWKKEDGETECMTHSSGLLFGITDAMLAVPHHAGYVTHGFSNLIVFDRHRLFQEAEQMPALDCSLWKSVASHCLRRNSRFHRYKLQSCHSLMDRAAFLSGGSGMMGQEMVEMEADDSLILVRGKILEVEGKVAIGPLGRADTSAAPVLMEPVGRGTGGKVTLSGDYKAFKLPSDMLANFAKEERGRMLLQKTRKRESMSISTMNPMSNNNHRSSPNSPMTGDFVSEAAEAQQRSLAMSQAMEENLAAKFNLKNPVAARVGAQAAMKFMTGLKRRQEDADGVDADPAKAAAAAVERMAEGGGGHGGDIYGE 882
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE) HSP 1 Score: 224 bits (572), Expect = 5.380e-60 Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 1
Query: 1 RASEASQGVFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDRARKLGDHHRSFFEVLKAWFRERKGGFSYSGIPHR 339
RASEASQGVFGQACFALELSMQKQEQLLKEDPFLCDA+WNLVWRYLPLFTAES+FTRLS GHITLSADELEDI+DTNDRARKLGDHHRSF EVLKAW+RERKGGFSYSGIPHR
Sbjct: 452 RASEASQGVFGQACFALELSMQKQEQLLKEDPFLCDADWNLVWRYLPLFTAESYFTRLSMGHITLSADELEDIQDTNDRARKLGDHHRSFSEVLKAWYRERKGGFSYSGIPHR 564
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: A0A4D9CXX3_9STRA (Na_H_Exchanger domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXX3_9STRA) HSP 1 Score: 101 bits (252), Expect = 4.320e-18 Identity = 184/791 (23.26%), Postives = 296/791 (37.42%), Query Frame = 1
Query: 1 RASEASQGVFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLS--------------ADELEDIRDTNDRARKLGDHHRSFFEVLKAWFRERKGGFS--------YSGIPHRLRSPWYEYHTKFLFADAGGEAVWGNLESFLA----NHTAAGDDSVESWTGHLKHSRFD--------GGITGTIDKFSRTHDHAREKTHKPAGARGEEKHEAELSRSLKNPLA----AGTSLDTPTGTTAAAATTEKAEAGAAPGSPTSQMASF------------------------EGEDHDQNDVRGRKGSM--SKRMFQRAATF-----AQNAGISLSHTH----------DHGRHDKDGLNDQGIDKSELLEARIRFLQSLKAEYFKAKREGKLGSSGKRQRGREGDREGERLRVLTESINMAHDKVDKGGELDGWSELSGRFSSGWEIVFAKHMNWWPARPCIAIAIAR-----RVSFQIDLAWNFLEAHHESNVKSLLADNGKVSDVQCQVNLENQ---KQIDSVEETINRLTIEAPMVMRSVKTRTAARIMVERFREATEMLAENGHLDEKEEEVLQHAVTNAEMMIAYHPNLEELPELSVVLEKIEFLHELTPEQRQRLIDVGACFYHEYVGEVRLMEMGKLGARGTKRSAERDFRFRGWFYVVRGQVEKEWRKEDGVTECMTHSSGLLFGITDAMLAVPHHAGYVTHGFSNLIVFDRHRLFQEAEQMPALDCSLWKSVASHCLRRNSRFHRYKLQSCHSLMDRAAFL 2112
R S A V+ + ALE ++ + LLK +PFL DA+W +VWRYLP+ T + ++ R +GH L+ +ELE+ +AR+ R ++ A + S G+P+RLR W Y + D + L + L NH +VE GH+KH + + G+ DK + G + + S++ PLA A +S P G +A + E +G++ +M++ EG N V + S+ S+ F A+ AG+ + H + D + + + L AR++ L LK Y G L + G + L +++ +D G EL+ W L W + A + +R I +A R++F LA NF++AH +SL D GK+ + Q ++I+ + TI P SVKT A ++++ FR E E G L E+ A +A ++ H + E P + VL + FL L +Q + L +V + KL RG +R GW+ VVRG V V + + G G+ +++L YVT ++L+ FD+ + QEAE P L SLW VA LR+ + + L+ A F+
Sbjct: 431 RESPAEVEVYQRTSIALEQRIEDRVMLLKREPFLGDADWGVVWRYLPVLTKDVYWHRFRQGHTLLTDWEAEYMSLRSRGDEEELEETVLKGQQARRQPLRRRRKAQLKAASVAAAQASASNPLSAPSKLKGVPNRLRRTWRYYAQLYNDLDGPEREGFRQLRAGLLDAWRNHL-----TVE---GHMKHEQEELASDQYLAAAAAGSSDKANE-------------GPASQLSSVMSSASSVEPPLARLAYASSSSSLPVGQEVSALSFEGVSSGSSKPISRRRMSNVTVLWEPEIEGLKLENSRGSVPCLAEGSAESSNGVGTPQESVPASENGFHPEGLASHDGTAKGAGVGEASAHTVHLGAPPTANSSTSDTVKVLGPALQEDMLKRARVQVLTVLKHLYGANFHSGLLSNEG--------------YQALEKNLYKLI--LDPGCELNEWRTLEREI---WIPLNALRLAKRLSRSAIIRPLANSFLFSRLAFLFGLAVNFIKAH-----RSLAEDLGKILGAGPTTTILEQEIWREIEDAQRTIEMYLPIYPNTFNSVKTEIATSVVLQHFRSLLEESHEMGILHERRYHKAVEACNDATNALSAHSHSEHAPSYASVLSAVGFLRFLPSQQLEELFLEPKPGKRRLFADVYVRANRKLLKRGLQREGGLGG---GWYVVVRGVV--------AVGDVIL-PQGSTLGLVESLLGEEVAEDYVTTTLTHLLFFDQAAILQEAESNPLLLKSLWWYVAVQELRQYESYEDLNVGEVGELLADAHFV 1164
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 2.700e-17 Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 1
Query: 1 RASEASQGVFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDR-ARKLGDHHRSFFEV--LKAWFRER----KGGFSYSGIPHRLRSPWYEYHTKFLFADAGGE 399
R++ A VF +AC A+E ++ + LLK D FL DA+W +VWRYLP+ T+++++ R+ G+I LS +E EDI D + G H F + WF R GG Y +P RLR WY YH KF + A G+
Sbjct: 364 RSTTAETEVFTKACSAIEARLEHKLDLLKGDRFLGDADWEMVWRYLPVSTSKTYWHRIRHGNINLSVEEEEDIHMIRDGIVNEAGLHGDVAFRAHQVHKWFTRRILRLPGGVGYCELPSRLRVTWYTYHKKFHHSSATGD 503
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: A0A6H5L6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F4_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 3.630e-15 Identity = 53/135 (39.26%), Postives = 74/135 (54.81%), Query Frame = 1
Query: 25 VFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDR-ARKLGDHHRSFFEV--LKAWFRER----KGGFSYSGIPHRLRSPWYEYH---TKFLFADAGGE 399
VF +AC A+E ++ + LLK D FL DA+W +VWRYLP+ T++ ++ R+ G+I LS +E EDI D + G H F + WF R +GG Y +P RLR WY YH KF + A G+
Sbjct: 68 VFTKACSAIEARLEHKLDLLKGDRFLGDADWEMVWRYLPVSTSKMYWHRIRHGNINLSVEEEEDIHMIRDGIVNEAGLHGVLAFRAHQVHKWFTRRILRLRGGVGYCDLPSRLRVTWYTYHKASVKFHHSSATGD 202
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 6.190e-10 Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 1
Query: 1 RASEASQGVFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDRARKLGDHHRSFFEVLKAWFRERKGGFSYSGIPHRLRSPWYEYHTKFLFAD 387
RA++A +F +AC A+E ++ + LK+D FL DA W +VWRY+P+ T+ ++ R+ G + L+ E E+I +++ G + +L G ++ +P RLR+ W YH KF D
Sbjct: 468 RATKAQTEIFIRACSAVESKLEHVVEELKKDRFLGDAEWPIVWRYVPIMTSRVYWHRIRYGSVVLANGEDEEI----SQSKPSGLSSATASAILSLPGNGGGGAGRFAHLPPRLRATWQSYHRKFHVTD 592
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 4.100e-9 Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 1 RASEASQGVFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDRARKLGDHHRSFFEVLKAWFRERKGGFS-YSGIPHRLRSPWYEYHTKFLFAD 387
RA++A +F +AC A+E ++ + LK+D FL DA W +VWRY+P+ T+ ++ R+ G + L+ E E+I +++ G + +L GG ++ +P RLR+ W YH KF D
Sbjct: 374 RATKAQTEIFIRACSAVESKLEHVVEELKKDRFLGDAEWPVVWRYVPIMTSRVYWHRIRYGSVVLAKGEDEEI----SQSQPSGLSSATASAMLSLLPGNGGGGAGRFTHLPPRLRATWQSYHRKFHVTD 499
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: A0A836CH43_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH43_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 9.190e-9 Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query: 25 VFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTND 234
VF +AC+A+E +Q L+K D FL DA+W LVWRYLP+ TA++++ R+ +G+I LS E +D+R D
Sbjct: 401 VFTRACWAMEARLQHAVDLIKGDRFLGDAHWELVWRYLPVLTAKTYWHRIRQGNIVLSDVEEQDLRRMAD 470
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Match: A0A835Z8G2_9STRA (Sodium/hydrogen exchanger family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G2_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 7.050e-7 Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 1
Query: 10 EASQGVFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTAESFFTRLSKGHITLSADELEDIRDTNDRARKLGDHHR--SFFEVLKAWFR---------ERKGGFSYSGIPHRLRSPWYEYH 366
E + VF +AC A+E +++ + LK+D FL DA+W +VWRY+P+ TA S++ R+ G I L+ E E D G R + VL+ R + ++ +P RLR W +H
Sbjct: 457 ELASEVFARACAAIEAKLEQVAEELKQDRFLGDADWPIVWRYIPVMTAHSYWHRIRYGTIMLANGE-EQFNSAGDGGGAGGARGRLAPLWGVLRRIGRGLLFVRAAADLASASKFAHLPPRLRDVWQRFH 585 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1179.1148.1 >prot_E-siliculosus-1a_F_contig1179.1148.1 ID=prot_E-siliculosus-1a_F_contig1179.1148.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1148.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=917bp RASEASQGVFGQACFALELSMQKQEQLLKEDPFLCDANWNLVWRYLPLFTback to top mRNA from alignment at E-siliculosus-1a_F_contig1179:136..15221+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1179.1148.1 ID=mRNA_E-siliculosus-1a_F_contig1179.1148.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1148.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=15086bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1179:136..15221+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1179:136..15221+ >mRNA_E-siliculosus-1a_F_contig1179.1148.1 ID=mRNA_E-siliculosus-1a_F_contig1179.1148.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1148.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5502bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1179:136..15221+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |