mRNA_E-siliculosus-1a_F_contig1178.1146.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: D7FPS9_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPS9_ECTSI) HSP 1 Score: 635 bits (1637), Expect = 4.490e-227 Identity = 331/341 (97.07%), Postives = 334/341 (97.95%), Query Frame = 1
Query: 70 MSSKPGKKKSKATRWGNAATAKPAAAAGGRGGIVGMETDEARKIRNAARFAEHLGGGSNSQQQGSGKKRSRWAMGNXXXSNSTDPVRGTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVEATIAAPKAGEEAAIDVKATRAAWARL 1092
MSSKPGKKKSKATRWG AA AKPAAAAGGRGGIVGMETDEARKIRNAARFAEHLGGGSNS+QQGSGKKRSRWAMGN SNSTDPVRG+SSSLEKSYFRLTSAPKPSDVRPPEIL RSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVEA +AAPKAGEEAAIDVKATRAAWARL
Sbjct: 1 MSSKPGKKKSKATRWGKAAKAKPAAAAGGRGGIVGMETDEARKIRNAARFAEHLGGGSNSKQQGSGKKRSRWAMGNGSGSNSTDPVRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVEAALAAPKAGEEAAIDVKATRAAWARL 341
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: R7UTY3_CAPTE (PCI domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UTY3_CAPTE) HSP 1 Score: 234 bits (598), Expect = 1.290e-66 Identity = 114/223 (51.12%), Postives = 159/223 (71.30%), Query Frame = 1
Query: 331 GTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 999
GTSSSLEK YFRLTSAP PS VRP E+L +SL VK W ++DY +VC+QLK+IRQDLTVQA+ D TV+VY+ H RIA+E GD EE+NQCQ++LK L+ G +++EF YR++Y ++ +N ++ M L+ EARQ GV HAL + ++ +G+YC FFRLY +AP M YL+D+ R R+ AIK ++KA+ P++ L ++Q++L F S LLEF+
Sbjct: 400 GTSSSLEKQYFRLTSAPDPSTVRPVEVLRKSLLMVKHHWKAKQDYAYVCEQLKSIRQDLTVQAVRDAFTVNVYEVHARIAMEKGDHEEFNQCQTQLKLLYQEGCNSDNINEFAAYRILYYIFTKNTLDLTTVMASLNYEARQDAGVKHALRLRSAWALGNYCLFFRLYLSAPKMGGYLIDWFASRERKAAIKRIIKAFKPSMTLDYLQKELGFSSAKDLLEFL 622
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: A0A8H7S054_9FUNG (PCI domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S054_9FUNG) HSP 1 Score: 229 bits (583), Expect = 2.370e-64 Identity = 127/280 (45.36%), Postives = 178/280 (63.57%), Query Frame = 1
Query: 163 GIVGMETDEARKIRNAARFAEHLGGGSNSQQQGSGKKRSRWAMG-NXXXSNSTDPVRGTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 999
GI G++ ++ ++ RF Q S R+R A+G N D + GTS LEK+YFRLTSAP PS VRPP++L ++L +K KW E++Y ++CDQ K++RQDLTVQ I D TV VY+ H RIALE GD+ EYNQCQS+LK+L+ G+ G M EFT YR++Y L+ +N ++N+ M +L+ E +Q + V HAL V + +Y FF+LY +AP M YLMD V R R RA+ + KAY PT+ L FIQ +L F+ ++ LL+F+
Sbjct: 353 GIQGLDQEDEKRQSRQRRF-----------QLQSESPRNRVAIGLQMMDINKHDSIIGTSQMLEKNYFRLTSAPDPSTVRPPKVLKKTLELLKTKWRDEQNYTYICDQFKSMRQDLTVQRIRDEFTVTVYEIHARIALEKGDLGEYNQCQSQLKQLYAMGINGNVM-EFTAYRILYYLHTQNWSDINSIMFELTAEQKQNDLVKHALQVRSALSTSNYHRFFKLYVSAPQMGGYLMDQFVERERVRAMLILCKAYRPTMSLEFIQNELAFERQEDLLKFL 620
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: A0A162NBM1_PHYB8 (PCI domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162NBM1_PHYB8) HSP 1 Score: 216 bits (550), Expect = 1.160e-63 Identity = 111/223 (49.78%), Postives = 152/223 (68.16%), Query Frame = 1
Query: 331 GTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 999
GTS LEK Y RLTSAP PS VRP IL ++L +K KW E++Y ++CDQ K++RQDLTVQ I D TV VY+ H RIALE GD+ EYNQCQS+LK+L++ G+PG M EFT YR++Y L+ +N ++N+ M +++ E ++ E V HAL V +Y FFRLY +AP M YLMD + R R +A+ + KA P +PLSFIQ +L F+ + L++F+
Sbjct: 10 GTSVKLEKQYLRLTSAPDPSTVRPLPILKQTLELLKDKWKAEQNYTYICDQFKSMRQDLTVQRIRDEFTVQVYEIHARIALEKGDLGEYNQCQSQLKQLYMLGIPGNVM-EFTAYRILYFLHTQNWSDINSIMAEVTPEQKRDEAVQHALQVRSCLATSNYHRFFRLYTSAPNMGGYLMDQFIERERVQALIILCKACRPDLPLSFIQTELAFEDHEQLIKFL 231
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: A0A7S3YM12_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM12_HETAK) HSP 1 Score: 216 bits (549), Expect = 1.790e-63 Identity = 118/233 (50.64%), Postives = 156/233 (66.95%), Query Frame = 1
Query: 325 VRGTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEE-DYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHR-------EVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 999
V+GT +LEK YFRLTSAP PS VRPP +L ++ +K+ W +E DYE+VCDQLKA+RQD TVQ I DGL VDVY+TH RIALE GD+ EYNQCQ++LKEL+ SG PG M EFT YR++Y + ++++ E+ + L R VAHAL V ++ DY FF+LY AP MS+Y+MD ++ ++R +A++ +VKAY PTI FIQ L FDS D E +
Sbjct: 3 VKGTCVNLEKRYFRLTSAPDPSTVRPPPVLEEAMLRLKKLWKDQEKDYEYVCDQLKAVRQDCTVQQIRDGLAVDVYETHARIALEEGDLNEYNQCQTQLKELYASGAPGHEM-EFTAYRVLYYVNMQDNQKNQDGSTEMLKMLKALRPAQRADPAVAHALRVRQAMAEDDYHLFFQLYEDAPNMSAYIMDLMLDKIRVKALQRVVKAYKPTIATDFIQRILAFDSEDECFELL 234
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: A0A2G8JDH4_STIJA (Putative leukocyte receptor cluster member 8-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JDH4_STIJA) HSP 1 Score: 216 bits (550), Expect = 2.490e-63 Identity = 108/229 (47.16%), Postives = 152/229 (66.38%), Query Frame = 1
Query: 313 STDPVRGTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 999
S +PV GT + K Y RLT+AP S+VRP E+L +S+ VK KW ++DY ++C+QLK+IRQDLTVQ I +G TV VY+ H RIALE GD EE+NQCQ++LK L+ +PG +++EFT YR++Y + + ++ + LS + V HAL + + + DY FF LY +AP MS YLMD V R R+ AIK MVK+Y P +P++FIQ +L F S + L+F+
Sbjct: 43 SLEPVAGTCQDIFKQYLRLTTAPNASEVRPLEVLKKSIEAVKVKWLEKKDYRYICNQLKSIRQDLTVQRIRNGFTVKVYEAHARIALEKGDREEFNQCQTQLKSLYAENIPG-NVNEFTAYRILYYILTNSSSDITTALTSLSPTVKNNAMVQHALALRTAVALSDYHKFFLLYRSAPKMSPYLMDMFVERQRKDAIKAMVKSYRPNLPVAFIQNELAFQSSEDCLKFL 270
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: A0A1X0RW83_RHIZD (PCI domain-containing protein (Fragment) n=2 Tax=Rhizopus TaxID=4842 RepID=A0A1X0RW83_RHIZD) HSP 1 Score: 213 bits (543), Expect = 1.160e-62 Identity = 110/227 (48.46%), Postives = 156/227 (68.72%), Query Frame = 1
Query: 319 DPVRGTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 999
D + GTS+ LEK Y RLTSAP PS VRP IL ++L+ ++ KW +E++Y ++CDQ K++RQDLTVQ I++ TV VY+ H RIALE GD+ EYNQCQ++L+ L+ S +PG M EFT YR++Y L+ +N +VN+ M +L+ E ++ E + HAL V S +Y FF LY AP M YLMD V R R +++ + KAY P + L FIQ +L F+SR+ L++F+
Sbjct: 1 DTIIGTSTKLEKQYLRLTSAPDPSTVRPLHILKQTLQLLRDKWKSEQNYTYICDQFKSMRQDLTVQRIKNEFTVQVYEIHARIALEKGDLGEYNQCQTQLRGLYASKIPGNVM-EFTAYRILYFLHTQNWADVNSAMSELTGEQKENEFIQHALQVRSSLATSNYHRFFYLYKTAPNMGGYLMDQFVERERVQSLLILCKAYRPDLSLEFIQNELAFESREELIKFL 226
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: A0A1B6M2U9_9HEMI (PCI domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M2U9_9HEMI) HSP 1 Score: 213 bits (542), Expect = 1.400e-62 Identity = 106/217 (48.85%), Postives = 152/217 (70.05%), Query Frame = 1
Query: 325 VRGTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDS 975
V G LEK Y RLT+AP+ + VRPP++L +SL VK +W +DY + C+QLK+IRQDLTVQ + D LTV VY+TH RIALE GD E+NQCQS+LK L+ +P + EFT YR++Y ++ + + ++N M L+++ R E V+HAL V ++ +G+Y F+LY AAP MSSYLMD+ + R R+ A+KT+VKAY T+P+SF+ ++L F +
Sbjct: 13 VVGVCQDLEKPYLRLTAAPEANAVRPPDVLRQSLSRVKERWVLNQDYHYACEQLKSIRQDLTVQGVRDKLTVSVYETHARIALEKGDHAEFNQCQSQLKLLY-EDLPTENQQEFTAYRILYYIFTKENMDLNTVMTALTEDDRGDECVSHALNVRSAWSLGNYHRLFKLYRAAPRMSSYLMDWFLPRERKLALKTVVKAYRQTLPVSFLTQELAFQT 228
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: A0A023G7Z9_AMBTT (Putative leucine permease transcriptional regulator (Fragment) n=2 Tax=Amblyomma TaxID=6942 RepID=A0A023G7Z9_AMBTT) HSP 1 Score: 218 bits (554), Expect = 1.420e-62 Identity = 116/253 (45.85%), Postives = 164/253 (64.82%), Query Frame = 1
Query: 322 PVRGTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVEATIAAPKAGEEAAIDVKATRAA 1080
P+ GT LEK Y RLTSAP PS +RP +L SL VK W ++DY + CDQLK+IRQDLTVQ + + TV VY+TH R+ALE GD EE+NQCQ++LK L+ G + EF GYR++Y+++ N E+ + LS E ++ E V HAL V ++ +G+Y FF+LY P MS +LMD+ V+R RR A+K MVKAY P +P+ +I+ L F R+ +L F+ ++ T+AA + A++D K + AA
Sbjct: 156 PIVGTCQDLEKQYLRLTSAPDPSTIRPVAVLRESLDMVKEHWVQKQDYHYACDQLKSIRQDLTVQCVRNPFTVQVYETHARVALEKGDHEEFNQCQTQLKTLYQEVECGNPL-EFLGYRILYNVFARNTLELKTILAHLSAEEKRDEVVKHALAVCHAWSLGNYARFFKLYERPPKMSGFLMDWFVVRERRNALKAMVKAYRPVLPVGYIERALGFTDREDVLAFL-TELNVTLAA----DGASVDCKESLAA 402
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Match: A0A443SJM2_9ACAR (Leukocyte receptor cluster member 8-like isoform X2 n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SJM2_9ACAR) HSP 1 Score: 213 bits (541), Expect = 5.380e-62 Identity = 105/229 (45.85%), Postives = 152/229 (66.38%), Query Frame = 1
Query: 313 STDPVRGTSSSLEKSYFRLTSAPKPSDVRPPEILMRSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFI 999
S P+ GT LEK Y RLTSAP P+ VRP +L +SL VK W DY + CDQLK+IRQDLTVQ + + TV+VY+TH RIALE GD EE+NQCQS+L+ L+ + V V+ EFTGY ++Y+++ +NH + + ++ E + HAL V + + + +Y TFF+LY AP MS +++D+ V R R+ A+K M+KAY PT+PL F++++L F + D +F+
Sbjct: 46 SATPIVGTCEDLEKQYLRLTSAPDPATVRPVHVLRKSLESVKDHWIRNHDYYYACDQLKSIRQDLTVQFVRNSFTVEVYETHARIALEKGDREEFNQCQSQLQVLY-NEVDSVNKAEFTGYLILYTIFSDNHSGLQLLLSKINNSKLNDEVINHALTVRRCWSLKNYSTFFKLYLKAPKMSGFVIDWFVNRERKYALKAMLKAYRPTLPLQFLKDELAFANNDEFQQFL 273 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1178.1146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1178.1146.1 >prot_E-siliculosus-1a_F_contig1178.1146.1 ID=prot_E-siliculosus-1a_F_contig1178.1146.1|Name=mRNA_E-siliculosus-1a_F_contig1178.1146.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=342bp MSSKPGKKKSKATRWGNAATAKPAAAAGGRGGIVGMETDEARKIRNAARFback to top mRNA from alignment at E-siliculosus-1a_F_contig1178:161..7484+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1178.1146.1 ID=mRNA_E-siliculosus-1a_F_contig1178.1146.1|Name=mRNA_E-siliculosus-1a_F_contig1178.1146.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7324bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1178:161..7484+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1178:161..7484+ >mRNA_E-siliculosus-1a_F_contig1178.1146.1 ID=mRNA_E-siliculosus-1a_F_contig1178.1146.1|Name=mRNA_E-siliculosus-1a_F_contig1178.1146.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1178:161..7484+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |