mRNA_E-siliculosus-1a_F_contig1177.1144.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1177.1144.1
Unique NamemRNA_E-siliculosus-1a_F_contig1177.1144.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1177.1144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1177contigE-siliculosus-1a_F_contig1177:35129..36208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size567
Model size1081
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.8644578-CDS-E-siliculosus-1a_F_contig1177:35128..356951622927696.8644578-CDS-E-siliculosus-1a_F_contig1177:35128..35695Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1177 35129..35695 +
1696318642.1715987-CDS-E-siliculosus-1a_F_contig1177:35128..356951696318642.1715987-CDS-E-siliculosus-1a_F_contig1177:35128..35695Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1177 35129..35695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.8746886-UTR-E-siliculosus-1a_F_contig1177:35695..362081622927696.8746886-UTR-E-siliculosus-1a_F_contig1177:35695..36208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1177 35696..36208 +
1696318642.1794033-UTR-E-siliculosus-1a_F_contig1177:35695..362081696318642.1794033-UTR-E-siliculosus-1a_F_contig1177:35695..36208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1177 35696..36208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1177.1144.1prot_E-siliculosus-1a_F_contig1177.1144.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1177 35129..35695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1177.1144.1

>prot_E-siliculosus-1a_F_contig1177.1144.1 ID=prot_E-siliculosus-1a_F_contig1177.1144.1|Name=mRNA_E-siliculosus-1a_F_contig1177.1144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=189bp
LHSSRIRFFLVPSCLHILLVFPATWIVPGLYVTNLAPSSDGGESGCLSAL
CTEHAVTPNAACILVCVCGCTWRSQRTKLLVRFYYNGVGTRGCLLLPGGT
NSWQKKTKLNFSHRQFHTFVCYILNLAKARRPKIRTASMLCIENLDRNVN
CCPPPVPLSRGIFLCITSRHPVGRTSSWAIACTLCRQL*
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mRNA from alignment at E-siliculosus-1a_F_contig1177:35129..36208+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1177.1144.1 ID=mRNA_E-siliculosus-1a_F_contig1177.1144.1|Name=mRNA_E-siliculosus-1a_F_contig1177.1144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1080bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1177:35129..36208+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGCACTCTTCAAGGATCCGATTCTTTCTCGTTCCTTCGTGTCTCCACAT
ATTATTGGTCTTCCCTGCTACATGGATCGTCCCTGGTCTTTATGTCACAA
ATCTCGCCCCGTCTAGCGACGGCGGCGAGAGCGGCTGCCTATCGGCCCTC
TGCACCGAGCACGCCGTTACGCCCAACGCGGCATGCATTTTGGTGTGCGT
GTGTGGATGTACATGGCGCTCTCAACGGACGAAACTGCTTGTTCGTTTCT
ACTACAATGGCGTGGGCACAAGAGGGTGCCTCTTGCTTCCGGGCGGGACC
AACTCTTGGCAGAAGAAAACTAAACTCAACTTCTCACACAGACAGTTTCA
CACGTTCGTATGCTACATTTTGAATCTAGCGAAAGCACGGCGCCCAAAAA
TAAGAACGGCGAGCATGCTGTGCATAGAAAATCTCGACCGTAACGTGAAC
TGCTGCCCCCCCCCTGTGCCACTCTCTCGGGGCATATTCCTCTGTATTAC
GAGCCGCCACCCTGTTGGAAGAACATCATCCTGGGCGATTGCTTGCACCC
TCTGCAGGCAATTGTAAACATCGGGTCCCCCAGACAACCGCGTTGGAGGG
AGTACAGCGGAATGGCGGCTACAGGAGCTCGCCGTACGAAAAACTGGGAT
ACCGGCGGCAGCCGGCCGGACAAGGGCTAGCTACAAAGCGCAGTGTGCCA
ACTCAACAAGAGGAGCGCGCACACCGACCAGCCTTCGCGCCGCACACGTA
CCTTACTCATGCCTCTCCTGCTCGGCTCCCTTTACGTTCGTACAGGTATG
ACCTCCGTGTTTTTTCGTTTCTCTGCACCCTCCTCCCTTCCCCCCGGCGA
CGAGTGCGTCGCTTGACGTGCATACCCCCGTAGCAACATGCACCACGCTG
CTGCTGCGCTGCTGCTTTCGGGCGTGGTTGTATGACGATGCGATAAACGC
AGCGTACGACACGGGGAAGGAGCTCCGCTGGAGCGGAGCGGAAATTCATG
CAGACGTTGTAAAACGGCAAAAAACACCCCTGGTCTTGCCGTTCCCGCCA
ACTTTCATGCCGGAAGTTTCAGGGCTAGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1177:35129..36208+

>mRNA_E-siliculosus-1a_F_contig1177.1144.1 ID=mRNA_E-siliculosus-1a_F_contig1177.1144.1|Name=mRNA_E-siliculosus-1a_F_contig1177.1144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1177:35129..36208+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGCACTCTTCAAGGATCCGATTCTTTCTCGTTCCTTCGTGTCTCCACAT
ATTATTGGTCTTCCCTGCTACATGGATCGTCCCTGGTCTTTATGTCACAA
ATCTCGCCCCGTCTAGCGACGGCGGCGAGAGCGGCTGCCTATCGGCCCTC
TGCACCGAGCACGCCGTTACGCCCAACGCGGCATGCATTTTGGTGTGCGT
GTGTGGATGTACATGGCGCTCTCAACGGACGAAACTGCTTGTTCGTTTCT
ACTACAATGGCGTGGGCACAAGAGGGTGCCTCTTGCTTCCGGGCGGGACC
AACTCTTGGCAGAAGAAAACTAAACTCAACTTCTCACACAGACAGTTTCA
CACGTTCGTATGCTACATTTTGAATCTAGCGAAAGCACGGCGCCCAAAAA
TAAGAACGGCGAGCATGCTGTGCATAGAAAATCTCGACCGTAACGTGAAC
TGCTGCCCCCCCCCTGTGCCACTCTCTCGGGGCATATTCCTCTGTATTAC
GAGCCGCCACCCTGTTGGAAGAACATCATCCTGGGCGATTGCTTGCACCC
TCTGCAGGCAATTGTAACTGCACTCTTCAAGGATCCGATTCTTTCTCGTT
CCTTCGTGTCTCCACATATTATTGGTCTTCCCTGCTACATGGATCGTCCC
TGGTCTTTATGTCACAAATCTCGCCCCGTCTAGCGACGGCGGCGAGAGCG
GCTGCCTATCGGCCCTCTGCACCGAGCACGCCGTTACGCCCAACGCGGCA
TGCATTTTGGTGTGCGTGTGTGGATGTACATGGCGCTCTCAACGGACGAA
ACTGCTTGTTCGTTTCTACTACAATGGCGTGGGCACAAGAGGGTGCCTCT
TGCTTCCGGGCGGGACCAACTCTTGGCAGAAGAAAACTAAACTCAACTTC
TCACACAGACAGTTTCACACGTTCGTATGCTACATTTTGAATCTAGCGAA
AGCACGGCGCCCAAAAATAAGAACGGCGAGCATGCTGTGCATAGAAAATC
TCGACCGTAACGTGAACTGCTGCCCCCCCCCTGTGCCACTCTCTCGGGGC
ATATTCCTCTGTATTACGAGCCGCCACCCTGTTGGAAGAACATCATCCTG
GGCGATTGCTTGCACCCTCTGCAGGCAATTGTAA
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