mRNA_E-siliculosus-1a_F_contig1176.1141.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1176.1141.1
Unique NamemRNA_E-siliculosus-1a_F_contig1176.1141.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: D7FV66_ECTSI (Postmeiotic segregation increased 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV66_ECTSI)

HSP 1 Score: 961 bits (2484), Expect = 0.000e+0
Identity = 519/546 (95.05%), Postives = 525/546 (96.15%), Query Frame = 2
Query:    2 EAEVLDCLKTALHKQWESSRYTIPVNQGQLVQARLTDGAAFTLRDTTTAXXXXXXEARGGASSVGVVSPGPLEDHVAAEEASVGKGEVEPVSGGSSKSQGTKGRVEVVETRRESGGGAIDSRESEGMKRERRTKGAEDRKRRARDFDAPAGAMRSLDPVRSEGGDRQRSTSPSNPKRHRGVVAESDEGVGEGRANGKAAASVDGDKAGSSVQETQGGNATPAKDHGDVDRGSRQRSPEGTQGPKEGPPERDSSVRGGHSPAPAEGGKTPGARRETSSGAACQPLAYDMRSILGGCRRASRLTRKRNARNASADSFSAKLSGCGAKDRDSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSASLRTAAGLEPLLTA 1639
            EAEVLDCLKTALHKQWESSRYTIPVNQGQLVQARLTDGAAFTLRDT  A XXXXXEARGGASSVGVVSPGPLEDHVAAEEAS GK E+E VSG  SK+QGTK RVEVVETRRESGGGA D RESEGMKRERRTK AEDRKRR RDFDAPAGAMRSLDPVRSEGGDRQRSTSPSNPKRHRGVVAESD+GVGEGRA+GKAAASVDGDKAGSSVQ+TQGGNATPAKDHGDVD GSRQRSPEGT GPKE PPERDSSVR GH PA AEGGKTPGARRETSSGAACQPLAYDMRSILGGCRRASRLTRKRNARNASADSFSAKLSGCGAKDRDSQAAARAFSRVL KEHF QMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFT+DDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSASLRTAAGLEPLLTA
Sbjct:  362 EAEVLDCLKTALHKQWESSRYTIPVNQGQLVQARLTDGAAFTLRDTAAATXXXXXEARGGASSVGVVSPGPLEDHVAAEEASGGKDEMELVSGECSKNQGTKDRVEVVETRRESGGGATDWRESEGMKRERRTKSAEDRKRRTRDFDAPAGAMRSLDPVRSEGGDRQRSTSPSNPKRHRGVVAESDDGVGEGRASGKAAASVDGDKAGSSVQDTQGGNATPAKDHGDVDGGSRQRSPEGTLGPKEAPPERDSSVRVGHPPASAEGGKTPGARRETSSGAACQPLAYDMRSILGGCRRASRLTRKRNARNASADSFSAKLSGCGAKDRDSQAAARAFSRVLHKEHFTQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTIDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSASLRTAAGLEPLLTA 907          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: I2CR37_NANGC (MutL_C domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR37_NANGC)

HSP 1 Score: 264 bits (674), Expect = 3.150e-80
Identity = 125/215 (58.14%), Postives = 162/215 (75.35%), Query Frame = 2
Query:  980 RDSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNT----------NPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVS 1594
            RD++AAAR FSRVL K H  ++ V+GQFNLGF+I  +G+D+FILDQHACDEKYNFE LQ TTT+H+Q L+ P PLE SA EE+ I++++  F+ NGF F +D +    +++K+ ++P+SKG QFG+ D+HELAS++ D++           P   VRLPK RAMFASRACR S MIGKAL + QM +VVA +A IEQPWNCPHGRPTMRHL D+S
Sbjct:    7 RDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSAMEEVVILEHLPTFKANGFSFRLDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQMQKVVANLAEIEQPWNCPHGRPTMRHLVDLS 221          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: A0A485LCN4_9STRA (Aste57867_19480 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCN4_9STRA)

HSP 1 Score: 264 bits (674), Expect = 4.900e-74
Identity = 122/204 (59.80%), Postives = 160/204 (78.43%), Query Frame = 2
Query:  983 DSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVS 1594
            D++ A  A  RVL K  F++M V+GQFNLGF+I  L SDLFI+DQHA DEK+ +E LQ+TT IHQQPLVRP+ +E +A EEMTI+D++A+F++ GF F VD+  P T+KLK+ ++PFSK TQ+GVDDV EL S++ +N +P   +RLPK  AMFASRACRS+ MIG AL K +M ++V ++A +EQPWNCPHGRPTMRHL D+S
Sbjct:  559 DAEEATAALQRVLSKADFSRMEVIGQFNLGFIIARLDSDLFIIDQHASDEKFRYETLQRTTVIHQQPLVRPMSMELTAVEEMTILDHLAIFKKQGFHFQVDEGAPVTQKLKLISLPFSKHTQWGVDDVRELVSLLLENPHPPSTIRLPKTLAMFASRACRSAVMIGTALKKEEMQKIVGQLADLEQPWNCPHGRPTMRHLVDLS 762          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: A0A833X1G2_PHYIN (MutL C terminal dimerization domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833X1G2_PHYIN)

HSP 1 Score: 261 bits (668), Expect = 5.950e-73
Identity = 122/203 (60.10%), Postives = 158/203 (77.83%), Query Frame = 2
Query:  983 DSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADV 1591
            D++ AA A  RVL+KE F +M+V+GQFNLGF+I  LG+DLFI+DQHA DEK+N+E LQQTT +HQQPLVRPL LE +A EEM I+D++ +F +NGF F VD D P TKKLK+ ++PF+K TQFG +D+ ELAS++ D       +RLPK  AMFASRACRSS MIG AL K +M ++V  ++ ++QPWNCPHGRPT+RHL D+
Sbjct:  586 DNEVAAAALQRVLKKEDFKRMQVLGQFNLGFIIGKLGNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLRLELTAGEEMVILDHLGVFTKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPMNTSTIRLPKVMAMFASRACRSSIMIGTALHKEEMQKIVRNLSGLDQPWNCPHGRPTLRHLVDL 788          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: A0A4D9CZ00_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ00_9STRA)

HSP 1 Score: 265 bits (676), Expect = 7.360e-73
Identity = 126/215 (58.60%), Postives = 162/215 (75.35%), Query Frame = 2
Query:  980 RDSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNT----------NPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVS 1594
            RD++AAAR FSRVL K H  ++ V+GQFNLGF+I  +G+D+FILDQHACDEKYNFE LQ TTT+H+Q L+ P PLE SA EE+ I++++  F+ NGF F VD +    +++K+ ++P+SKG QFG+ D+HELAS++ D++           P   VRLPK RAMFASRACR S MIGKAL + QM +VVA +A IEQPWNCPHGRPTMRHL D+S
Sbjct:  780 RDTEAAARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLIAPKPLELSALEEVVILEHLPTFKANGFSFRVDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQMQKVVANLAEIEQPWNCPHGRPTMRHLVDLS 994          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: A0A0W8CYU8_PHYNI (Mismatch repair endonuclease pms1 n=21 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CYU8_PHYNI)

HSP 1 Score: 258 bits (660), Expect = 8.140e-72
Identity = 122/203 (60.10%), Postives = 157/203 (77.34%), Query Frame = 2
Query:  983 DSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADV 1591
            D++ AA A  RVL+KE F +M V+GQFNLGF+I  L +DLFI+DQHA DEK+N+E LQQTT +HQQPLVRPL LE +A EEM I+D++A+F +NGF F VD D P TKKLK+ ++PF+K TQFG +D+ ELAS++ D       +RLPK  AMFASRACRSS MIG AL K +M ++V  ++ ++QPWNCPHGRPT+RHL D+
Sbjct:  587 DNELAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMIILDHLAVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPLNPATIRLPKVMAMFASRACRSSIMIGTALHKEEMQKIVRNLSGLDQPWNCPHGRPTLRHLVDL 789          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: A0A024UUQ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUQ3_9STRA)

HSP 1 Score: 259 bits (661), Expect = 9.530e-72
Identity = 123/214 (57.48%), Postives = 161/214 (75.23%), Query Frame = 2
Query:  977 DRDSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSASLRTAAG 1618
            D D   AA +  RVL K  F +M VVGQFNLGF+I  L  DLFI+DQHA DEK+ +E+LQQTT IHQQPLVRP+PL+ +A EEMTI+D++ LF++ GF F VD     T+KLK+ ++PFSK TQ+GVDDV EL S+V ++ +    +RLPK  AMFASRACRS+ MIG AL + +M +++ ++A +EQPWNCPHGRPTMRHL D+S +L++  G
Sbjct:  613 DDDLVEAAVSLQRVLSKADFRRMEVVGQFNLGFIIARLDRDLFIIDQHASDEKFRYEMLQQTTVIHQQPLVRPMPLDLTAVEEMTILDHLPLFKKQGFHFQVDPSAAATQKLKLISVPFSKHTQWGVDDVRELVSLVLESPHAASTIRLPKTLAMFASRACRSAVMIGTALKRDEMQKILLQLAELEQPWNCPHGRPTMRHLVDLSCTLQSQKG 826          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: K3WIM5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIM5_GLOUD)

HSP 1 Score: 256 bits (653), Expect = 1.350e-71
Identity = 122/211 (57.82%), Postives = 157/211 (74.41%), Query Frame = 2
Query:  977 DRDSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHG------RPTMRHLADV 1591
            + D+  AA A  RVL+K+ F +M+V+GQFNLGF+I  L  DLFI+DQHA DEK+N+E LQQTT +HQQPLVRPLPLE +A EEM I+D++ +F +NGF F V  D P TKKLK+ ++PF+K TQFGV+D+ ELAS++ D       +RLPK  AMFASRACRSS MIG AL K +M ++V  ++ +EQPWNCPHG      RPT+RHL D+
Sbjct:  483 EEDNDVAAAALQRVLKKDDFKRMQVLGQFNLGFIIGKLDDDLFIIDQHASDEKFNYETLQQTTVLHQQPLVRPLPLELTAGEEMVILDHLDVFAKNGFTFLVQKDAPATKKLKLLSLPFTKHTQFGVEDIRELASLLMDTPTNAASIRLPKVMAMFASRACRSSIMIGTALHKDEMQKIVRNLSGLEQPWNCPHGYDFSAFRPTLRHLMDL 693          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: A0A6A5AM97_9STRA (MutL_C domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AM97_9STRA)

HSP 1 Score: 239 bits (611), Expect = 2.300e-71
Identity = 112/191 (58.64%), Postives = 149/191 (78.01%), Query Frame = 2
Query: 1034 FNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEM--VRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSAS 1600
            F +M V+GQFNLGF+I  L +DLFI+DQHA DEK+ +E+LQQTT +HQQPLVRP+ LE +A EEMTI+D++ LF++ GF F VD   P T+KL++ ++PFSK TQ+GVDDV EL S+V ++ +      +RLPK  AMFASRACRS+ MIG AL +  M ++V ++A +EQPWNCPHGRPTMRHL D+S++
Sbjct:    3 FRRMHVIGQFNLGFIIARLDADLFIIDQHASDEKFRYEMLQQTTVLHQQPLVRPMALELTAVEEMTILDHLPLFKKQGFHFQVDPAAPVTQKLRLISVPFSKHTQWGVDDVRELVSLVLESPHAAAAATIRLPKTLAMFASRACRSAVMIGTALKREDMQKIVVQLAELEQPWNCPHGRPTMRHLVDLSST 193          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Match: A0A6A3WZ68_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WZ68_9STRA)

HSP 1 Score: 257 bits (657), Expect = 3.020e-71
Identity = 121/203 (59.61%), Postives = 156/203 (76.85%), Query Frame = 2
Query:  983 DSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFTVDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADV 1591
            D++ AA A  RVL+KE F +M V+GQFNLGF+I  L +DLFI+DQHA DEK+N+E LQQTT +HQQPLVRPL LE +A EEM I+D++ +F +NGF F VD D P TKKLK+ ++PF+K TQFG +D+ ELAS++ D       +RLPK  AMFASRACRSS MIG AL K +M ++V  ++ ++QPWNCPHGRPT+RHL D+
Sbjct:  608 DNEVAAAALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLELTAGEEMVILDHLDVFAKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELASLLMDAPLNPSTIRLPKVMAMFASRACRSSIMIGTALHKEEMQKIVRNLSGLDQPWNCPHGRPTLRHLVDL 810          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV66_ECTSI0.000e+095.05Postmeiotic segregation increased 2 n=2 Tax=Ectoca... [more]
I2CR37_NANGC3.150e-8058.14MutL_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A485LCN4_9STRA4.900e-7459.80Aste57867_19480 protein n=1 Tax=Aphanomyces stella... [more]
A0A833X1G2_PHYIN5.950e-7360.10MutL C terminal dimerization domain n=1 Tax=Phytop... [more]
A0A4D9CZ00_9STRA7.360e-7358.60Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0W8CYU8_PHYNI8.140e-7260.10Mismatch repair endonuclease pms1 n=21 Tax=Phytoph... [more]
A0A024UUQ3_9STRA9.530e-7257.48Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
K3WIM5_GLOUD1.350e-7157.82Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A5AM97_9STRA2.300e-7158.64MutL_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A6A3WZ68_9STRA3.020e-7159.61Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1176contigE-siliculosus-1a_F_contig1176:32927..36048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1263
Model size2111
Exons4
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsCOG0323@1,KOG1978@2759
EggNOG free text desc.mismatched DNA binding
GOsGO:0000003,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009555,GO:0009791,GO:0009987,GO:0010154,GO:0015630,GO:0016020,GO:0016445,GO:0016446,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022414,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032138,GO:0032300,GO:0032389,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0061458,GO:0070013,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363,GO:1990391,GO:1990904
KEGG ModuleM00295
KEGG Pathwayko03430,ko03460,map03430,map03460
KEGG koko:K10858
Preferred namePms1
Seed eggNOG ortholog2880.D7FV66
Seed ortholog evalue1.3e-224
Seed ortholog score785.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1176.1141.1prot_E-siliculosus-1a_F_contig1176.1141.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1176 33396..35669 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.7606275-UTR-E-siliculosus-1a_F_contig1176:32926..333951622927696.7606275-UTR-E-siliculosus-1a_F_contig1176:32926..33395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1176 32927..33395 -
1696318642.124198-UTR-E-siliculosus-1a_F_contig1176:32926..333951696318642.124198-UTR-E-siliculosus-1a_F_contig1176:32926..33395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1176 32927..33395 -
1622927696.823283-UTR-E-siliculosus-1a_F_contig1176:35669..360481622927696.823283-UTR-E-siliculosus-1a_F_contig1176:35669..36048Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1176 35670..36048 -
1696318642.16374-UTR-E-siliculosus-1a_F_contig1176:35669..360481696318642.16374-UTR-E-siliculosus-1a_F_contig1176:35669..36048Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1176 35670..36048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.7728293-CDS-E-siliculosus-1a_F_contig1176:33395..337581622927696.7728293-CDS-E-siliculosus-1a_F_contig1176:33395..33758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 33396..33758 -
1696318642.133499-CDS-E-siliculosus-1a_F_contig1176:33395..337581696318642.133499-CDS-E-siliculosus-1a_F_contig1176:33395..33758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 33396..33758 -
1622927696.782897-CDS-E-siliculosus-1a_F_contig1176:33996..340841622927696.782897-CDS-E-siliculosus-1a_F_contig1176:33996..34084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 33997..34084 -
1696318642.1410003-CDS-E-siliculosus-1a_F_contig1176:33996..340841696318642.1410003-CDS-E-siliculosus-1a_F_contig1176:33996..34084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 33997..34084 -
1622927696.7937188-CDS-E-siliculosus-1a_F_contig1176:34538..347021622927696.7937188-CDS-E-siliculosus-1a_F_contig1176:34538..34702Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 34539..34702 -
1696318642.1484787-CDS-E-siliculosus-1a_F_contig1176:34538..347021696318642.1484787-CDS-E-siliculosus-1a_F_contig1176:34538..34702Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 34539..34702 -
1622927696.811471-CDS-E-siliculosus-1a_F_contig1176:35021..356691622927696.811471-CDS-E-siliculosus-1a_F_contig1176:35021..35669Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 35022..35669 -
1696318642.15601-CDS-E-siliculosus-1a_F_contig1176:35021..356691696318642.15601-CDS-E-siliculosus-1a_F_contig1176:35021..35669Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 35022..35669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1176.1141.1

>prot_E-siliculosus-1a_F_contig1176.1141.1 ID=prot_E-siliculosus-1a_F_contig1176.1141.1|Name=mRNA_E-siliculosus-1a_F_contig1176.1141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=421bp
MKRERRTKGAEDRKRRARDFDAPAGAMRSLDPVRSEGGDRQRSTSPSNPK
RHRGVVAESDEGVGEGRANGKAAASVDGDKAGSSVQETQGGNATPAKDHG
DVDRGSRQRSPEGTQGPKEGPPERDSSVRGGHSPAPAEGGKTPGARRETS
SGAACQPLAYDMRSILGGCRRASRLTRKRNARNASADSFSAKLSGCGAKD
RDSQAAARAFSRVLQKEHFNQMRVVGQFNLGFMICLLGSDLFILDQHACD
EKYNFEVLQQTTTIHQQPLVRPLPLETSASEEMTIIDNIALFERNGFRFT
VDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPK
ARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRH
LADVSASLRTAAGLEPLLTA*
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mRNA from alignment at E-siliculosus-1a_F_contig1176:32927..36048-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1176.1141.1 ID=mRNA_E-siliculosus-1a_F_contig1176.1141.1|Name=mRNA_E-siliculosus-1a_F_contig1176.1141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3122bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1176:32927..36048- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAAGCAGAGGTGCTAGACTGCTTGAAGACAGCTCTGCACAAGCAGTGGG AGTCTTCGAGGTACACCATTCCCGTCAACCAAGGGCAACTCGTCCAGGCG CGGCTGACGGACGGGGCGGCGTTCACGCTGCGGGACACGACGACGGCAAC GTCTCCGCCGCCCCCGGAAGCTCGCGGCGGCGCCTCCAGCGTCGGCGTCG TGTCGCCGGGGCCCCTCGAGGATCACGTTGCCGCAGAAGAAGCCTCCGTT GGCAAGGGCGAGGTGGAGCCCGTTTCCGGGGGATCTTCCAAGAGTCAGGG GACCAAAGGCCGTGTAGAAGTGGTGGAAACACGTCGCGAAAGCGGCGGCG GTGCCATCGACTCGCGAGAATCCGAGGGGATGAAGAGAGAAAGAAGGACG AAGGGCGCGGAGGACAGAAAGCGCAGGGCTCGCGACTTTGATGCGCCGGC GGGGGCGATGCGATCACTCGACCCCGTGAGAAGCGAAGGCGGAGACCGGC AGCGGTCGACAAGCCCTTCCAACCCGAAACGCCACCGCGGGGTTGTTGCG GAGAGTGACGAAGGGGTCGGCGAGGGCCGCGCTAACGGCAAAGCAGCCGC GAGCGTCGACGGGGACAAAGCTGGCAGCAGCGTGCAAGAAACGCAAGGCG GCAATGCGACGCCTGCCAAGGACCACGGCGATGTGGACAGGGGATCGAGA CAGCGGAGTCCCGAAGGCACGCAGGGCCCGAAAGAGGGGCCCCCCGAGAG GGACAGCTCAGTTCGTGGCGGCCACTCCCCAGCCCCTGCCGAGGGGGGTA AGACTCCTGGCGCACGACGAGAGACCAGCAGCGGTGCCGCTTGCCAACCC CTCGCGTATGACATGCGGAGCATCCTCGGAGGGTGCCGCAGGGCGTCTCG ATTGACGCGAAAGCGAAACGCCCGAAACGCCTCCGCGGACTCGTTCTCTG CGAAGCTCTCTGGTTGCGGTGCGAAGGACCGAGACTCACAGGCAGCCGCG CGAGCGTTTTCAAGGGTTTTGCAAAAGGTGGGTGAAGTGAAATAGTGTTT CAACACGAGACAGCCGACGGGAATTTGTATGGTGGTCGAAGTGTGTTTTT GTAAAGCGTCACTGGTAAGGATGAGCTCACCTTGCCAGTTCGCTATCGGC TGCAGTTTAGTGTAGGCTCATCATCAGGTGTTGTTGTAGTGTCAGAGTGA GGCGTGCCATGTTTGGGTAGCTCTTTCAAACCGCGGGTCGTGCTTTGCTC CATACTAAGTACAGCCAAGGCAACTTCGCGCCCTTGTTTTTTTTCTCTCC ATCGTTAACGCCTACCTGGTACTCTTTTGTTTTGTTGCTGATCCAGGAGC ACTTCAACCAGATGCGTGTGGTTGGCCAGTTCAACTTGGGATTCATGATC TGCCTGTTGGGCTCAGATCTGTTTATCTTGGACCAGCACGCCTGTGACGA GAAGTACAACTTCGAGGTGCTTCAGCAAACCACTACCATCCATCAGCAAC CTCTTGTCAGGTAGGCTATCGTGTGTCGCTCGCATGGCCTGGTGCACCGT ACGTAAATAAAAGCTCTTGCACCCCGAGTAAAGCATTAAGCTATGTGCAG CGGTACGATGACTTGGGTGTTTGCGGGAGTACTGATGAGAAACCAGCTTC ATCGGAGTTCTCGTCTCCGTCATCCCATCCCAAATCCTGCGAGTGCTTAG GCATCAATAGTAAAGGAGCAATCAAATCTCGATGTCGTAAAGATTCAGGC CCCACTCTTTGTGGTCAAGTGGATGAATACGTCCACGCGAGTCCATAATG CGCTTGTCTTAAGTATAGTCTACTTGTGAGACTCGCACCAAGTGATTCAA GCACCAGATTCCAAGCACGTGTGTGTGAATGAAGAGAGTGTTTGGCGGCT GAGAAGGTGGAGGCAGATCGTCTTGAAAAACGTGCTTGTGCGCCTCTGTC TTTTGTGCCCGCAGGCCTCTACCTCTCGAGACCTCTGCTTCCGAGGAGAT GACCATCATCGACAACATCGCCTTGTTCGAGAGGAACGGTTTCCGCTTCA CGGTGAGAGGGACAACTTAGCACGTTCTCATGATTCCTTACATTTGCCGC ATGGCGAGCGAGCGTTCTCCTTTGTCCATGACAGCACTCAAACACTTTCC CTTGCGTCGAGTGCAGCAGTAGAGTTTATCATGTTAGCTTTTGCCTTCGT GTGACCAACCTTTTCACAGATCAGCCACAGTTTCGGGAGGGTGTTTCGAT TTTTTTTTAACCCGGCCGTCTGTCTCCTTGTGGTGCGTAGGTCGACGACG ACCAGCCCACAACGAAGAAGCTCAAGATCACGGCGATCCCCTTCAGCAAG GGCACGCAGTTCGGCGTGGACGACGTCCACGAGCTGGCGTCCATCGTGGC GGACAACACCAACCCCGGAGAGATGGTGCGACTCCCGAAGGCACGAGCCA TGTTCGCAAGCCGCGCCTGCCGGAGCTCGTTCATGATCGGGAAGGCGTTG GACAAGGGGCAGATGGCGCGAGTGGTGGCCAAGATGGCCACCATCGAGCA GCCCTGGAACTGCCCACACGGGCGCCCGACGATGAGGCACCTGGCAGATG TGTCCGCGAGCTTGCGCACGGCAGCGGGGTTGGAGCCGCTGCTGACAGCA TGAGGGGCACCTGCGGTAGAAAGATGTTGGGAGTTGGGAGGTGGTGACGA CCTGGTCCGGTGTCGAGAAAGGTGCTCGAGTGCTGAAGTATTAGTATTGT GTATGGGGCGTCCAGAATTTATTGCAAGGTGTTAGGACCGACGTCCAGAA CAGTTGGGACGATTTGTAGAGTTTGTTGTACCTGCTGCCTGAGCAGACCC AGAAACGGATGTTGACAGCTTTGTTTGGAGTATTTACCGTGATGATCAAA TCAGGAGCATCAGACAAGAGTTGCGAACGTACGGGGCCAGACCCCCATTC ATTTGTTGCTTTCCTTTTACTGCTGTGTCTTTAGCAACTTGCAGTCTTTC GCGTTCAACAACAAAAATATCCTTGATATGCTGCTGTTGTTATGGTCTCC ATAGCCTTATAGATATAGACTTCCGACGAGCGTCCAAGACACCTAAGAAC CCACTTGTAAGTGAGAACACCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1176:32927..36048-

>mRNA_E-siliculosus-1a_F_contig1176.1141.1 ID=mRNA_E-siliculosus-1a_F_contig1176.1141.1|Name=mRNA_E-siliculosus-1a_F_contig1176.1141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2526bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1176:32927..36048- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGAGAGAAAGAAGGACGAAGGGCGCGGAGGACAGAAAGCGCAGGGC
TCGCGACTTTGATGCGCCGGCGGGGGCGATGCGATCACTCGACCCCGTGA
GAAGCGAAGGCGGAGACCGGCAGCGGTCGACAAGCCCTTCCAACCCGAAA
CGCCACCGCGGGGTTGTTGCGGAGAGTGACGAAGGGGTCGGCGAGGGCCG
CGCTAACGGCAAAGCAGCCGCGAGCGTCGACGGGGACAAAGCTGGCAGCA
GCGTGCAAGAAACGCAAGGCGGCAATGCGACGCCTGCCAAGGACCACGGC
GATGTGGACAGGGGATCGAGACAGCGGAGTCCCGAAGGCACGCAGGGCCC
GAAAGAGGGGCCCCCCGAGAGGGACAGCTCAGTTCGTGGCGGCCACTCCC
CAGCCCCTGCCGAGGGGGGTAAGACTCCTGGCGCACGACGAGAGACCAGC
AGCGGTGCCGCTTGCCAACCCCTCGCGTATGACATGCGGAGCATCCTCGG
AGGGTGCCGCAGGGCGTCTCGATTGACGCGAAAGCGAAACGCCCGAAACG
CCTCCGCGGACTCGTTCTCTGCGAAGCTCTCTGGTTGCGGTGCGAAGGAC
CGAGACTCACAGGCAGCCGCGCGAGCGTTTTCAAGGGTTTTGCAAAAGAT
GAAGAGAGAAAGAAGGACGAAGGGCGCGGAGGACAGAAAGCGCAGGGCTC
GCGACTTTGATGCGCCGGCGGGGGCGATGCGATCACTCGACCCCGTGAGA
AGCGAAGGCGGAGACCGGCAGCGGTCGACAAGCCCTTCCAACCCGAAACG
CCACCGCGGGGTTGTTGCGGAGAGTGACGAAGGGGTCGGCGAGGGCCGCG
CTAACGGCAAAGCAGCCGCGAGCGTCGACGGGGACAAAGCTGGCAGCAGC
GTGCAAGAAACGCAAGGCGGCAATGCGACGCCTGCCAAGGACCACGGCGA
TGTGGACAGGGGATCGAGACAGCGGAGTCCCGAAGGCACGCAGGGCCCGA
AAGAGGGGCCCCCCGAGAGGGACAGCTCAGTTCGTGGCGGCCACTCCCCA
GCCCCTGCCGAGGGGGGTAAGACTCCTGGCGCACGACGAGAGACCAGCAG
CGGTGCCGCTTGCCAACCCCTCGCGTATGACATGCGGAGCATCCTCGGAG
GGTGCCGCAGGGCGTCTCGATTGACGCGAAAGCGAAACGCCCGAAACGCC
TCCGCGGACTCGTTCTCTGCGAAGCTCTCTGGTTGCGGTGCGAAGGACCG
AGACTCACAGGCAGCCGCGCGAGCGTTTTCAAGGGTTTTGCAAAAGGAGC
ACTTCAACCAGATGCGTGTGGTTGGCCAGTTCAACTTGGGATTCATGATC
TGCCTGTTGGGCTCAGATCTGTTTATCTTGGACCAGCACGCCTGTGACGA
GAAGTACAACTTCGAGGTGCTTCAGCAAACCACTACCATCCATCAGCAAC
CTCTTGTCAGGAGCACTTCAACCAGATGCGTGTGGTTGGCCAGTTCAACT
TGGGATTCATGATCTGCCTGTTGGGCTCAGATCTGTTTATCTTGGACCAG
CACGCCTGTGACGAGAAGTACAACTTCGAGGTGCTTCAGCAAACCACTAC
CATCCATCAGCAACCTCTTGTCAGGCCTCTACCTCTCGAGACCTCTGCTT
CCGAGGAGATGACCATCATCGACAACATCGCCTTGTTCGAGAGGAACGGT
TTCCGCTTCACGGCCTCTACCTCTCGAGACCTCTGCTTCCGAGGAGATGA
CCATCATCGACAACATCGCCTTGTTCGAGAGGAACGGTTTCCGCTTCACG
GTCGACGACGACCAGCCCACAACGAAGAAGCTCAAGATCACGGCGATCCC
CTTCAGCAAGGGCACGCAGTTCGGCGTGGACGACGTCCACGAGCTGGCGT
CCATCGTGGCGGACAACACCAACCCCGGAGAGATGGTGCGACTCCCGAAG
GCACGAGCCATGTTCGCAAGCCGCGCCTGCCGGAGCTCGTTCATGATCGG
GAAGGCGTTGGACAAGGGGCAGATGGCGCGAGTGGTGGCCAAGATGGCCA
CCATCGAGCAGCCCTGGAACTGCCCACACGGGCGCCCGACGATGAGGCAC
CTGGCAGATGTGTCCGCGAGCTTGCGCACGGCAGCGGGGTTGGAGCCGCT
GCTGACAGCATGAGTCGACGACGACCAGCCCACAACGAAGAAGCTCAAGA
TCACGGCGATCCCCTTCAGCAAGGGCACGCAGTTCGGCGTGGACGACGTC
CACGAGCTGGCGTCCATCGTGGCGGACAACACCAACCCCGGAGAGATGGT
GCGACTCCCGAAGGCACGAGCCATGTTCGCAAGCCGCGCCTGCCGGAGCT
CGTTCATGATCGGGAAGGCGTTGGACAAGGGGCAGATGGCGCGAGTGGTG
GCCAAGATGGCCACCATCGAGCAGCCCTGGAACTGCCCACACGGGCGCCC
GACGATGAGGCACCTGGCAGATGTGTCCGCGAGCTTGCGCACGGCAGCGG
GGTTGGAGCCGCTGCTGACAGCATGA
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