mRNA_E-siliculosus-1a_F_contig11754.1136.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.180e-33 Identity = 67/105 (63.81%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRT---------------------------GDQLVLESAGCPQCSP 234
NNELTAQIYGDKSQ APWAALSYVIS++R VLLEFPGLRWRGLL+CPQHGDPMLLDS+ R GDQL+LESAGC QCSP
Sbjct: 287 NNELTAQIYGDKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQHGDPMLLDSEVYRRSHSGTLPVLKFPLEALNFEIYDRTILQGDQLLLESAGCRQCSP 391
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5KHF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF4_9PHAE) HSP 1 Score: 111 bits (278), Expect = 7.370e-28 Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKAT 180
NNELTAQIYG+KSQ APWAALSYVIS++R VLLEFPGLRWRGLL+CPQHGDPMLLDS+ +
Sbjct: 273 NNELTAQIYGNKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQHGDPMLLDSEVS 332
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.340e-26 Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCSP 234
+NELTAQI+GD S APW ALSYVISA+R +LL+FPGLR RG L+CPQHGD MLL +K T+ G +L LE +GCPQCSP
Sbjct: 756 DNELTAQIFGDISTPAPWVALSYVISAVRLMLLDFPGLRSRGSLKCPQHGDAMLLVNKMTQAGVKL-LEPSGCPQCSP 832
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 104 bits (259), Expect = 2.650e-24 Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCSP 234
+NELTAQI+GD S APW ALSYV+SA+ +LL+FPGLR RG L+CPQHGD M L + TRTGD+ +LE + C QCSP
Sbjct: 856 DNELTAQIFGDISTPAPWVALSYVVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGDK-ILEGSRCRQCSP 932
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 102 bits (255), Expect = 9.110e-24 Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
+NELTA+I+GD S A W ALSYV+SA++ +L++FPGLRW+G L+CP+HGD ML KA R GD+L LE + CPQCS
Sbjct: 408 DNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFVDKARRGGDKL-LEGSRCPQCS 483
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.250e-23 Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
+NELTA+I+GD S A W ALSYV+SA+R +L++FPGLRW+G L+CPQHGD ML A R GD+L LE + CPQCS
Sbjct: 547 DNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDMARRGGDKL-LEGSRCPQCS 622
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 100 bits (250), Expect = 4.370e-23 Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
+NEL AQI+GD S PW A SYV+SA+ +L++FPGL W+G L+CPQHGD ML +KATR GD+ LE + CPQCS
Sbjct: 860 DNELIAQIFGDVSTPGPWGATSYVMSAVSLMLVDFPGLGWKGYLECPQHGDGMLFVNKATRDGDKF-LEGSRCPQCS 935
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5K2U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U4_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.100e-22 Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
+NE TA I+GD S +PW ALSYV+SA+ ++ +FPGLR RG L+CPQHGD MLL +K TR GD+ LE +GCPQCS
Sbjct: 509 SNEPTANIFGDISTPSPWMALSYVMSAVSLMMRDFPGLRSRGSLKCPQHGDAMLLATKVTRPGDKF-LEGSGCPQCS 584
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.110e-22 Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 4 NELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
N LTAQI+GD S +A W ALSYV+SA+ +LL+FPGLRWRG L+CPQHGD +LL +K TR GD+ + S C QCS
Sbjct: 1093 NGLTAQIFGDTSFSAAWVALSYVMSAVSLMLLDFPGLRWRGSLKCPQHGDTILLTNKVTRAGDKFLAGSR-CQQCS 1167
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 2.070e-22 Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
NNELTA+I+GD S PW ALSYV+SA+ ++ +FPGLR RG L+CPQHGD MLL +K R GD+ LE + CPQCS
Sbjct: 784 NNELTAKIFGDISTPTPWMALSYVMSAVSLMMRDFPGLRSRGSLKCPQHGDAMLLATKVPRPGDKF-LEGSRCPQCS 859 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11754.1136.1 >prot_E-siliculosus-1a_F_contig11754.1136.1 ID=prot_E-siliculosus-1a_F_contig11754.1136.1|Name=mRNA_E-siliculosus-1a_F_contig11754.1136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGback to top mRNA from alignment at E-siliculosus-1a_F_contig11754:252..923- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11754.1136.1 ID=mRNA_E-siliculosus-1a_F_contig11754.1136.1|Name=mRNA_E-siliculosus-1a_F_contig11754.1136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11754:252..923- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11754:252..923- >mRNA_E-siliculosus-1a_F_contig11754.1136.1 ID=mRNA_E-siliculosus-1a_F_contig11754.1136.1|Name=mRNA_E-siliculosus-1a_F_contig11754.1136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11754:252..923- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |