mRNA_E-siliculosus-1a_F_contig11754.1136.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11754.1136.1
Unique NamemRNA_E-siliculosus-1a_F_contig11754.1136.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.180e-33
Identity = 67/105 (63.81%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRT---------------------------GDQLVLESAGCPQCSP 234
            NNELTAQIYGDKSQ APWAALSYVIS++R VLLEFPGLRWRGLL+CPQHGDPMLLDS+  R                            GDQL+LESAGC QCSP
Sbjct:  287 NNELTAQIYGDKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQHGDPMLLDSEVYRRSHSGTLPVLKFPLEALNFEIYDRTILQGDQLLLESAGCRQCSP 391          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5KHF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.370e-28
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKAT 180
            NNELTAQIYG+KSQ APWAALSYVIS++R VLLEFPGLRWRGLL+CPQHGDPMLLDS+ +
Sbjct:  273 NNELTAQIYGNKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQHGDPMLLDSEVS 332          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.340e-26
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCSP 234
            +NELTAQI+GD S  APW ALSYVISA+R +LL+FPGLR RG L+CPQHGD MLL +K T+ G +L LE +GCPQCSP
Sbjct:  756 DNELTAQIFGDISTPAPWVALSYVISAVRLMLLDFPGLRSRGSLKCPQHGDAMLLVNKMTQAGVKL-LEPSGCPQCSP 832          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.650e-24
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCSP 234
            +NELTAQI+GD S  APW ALSYV+SA+  +LL+FPGLR RG L+CPQHGD M L +  TRTGD+ +LE + C QCSP
Sbjct:  856 DNELTAQIFGDISTPAPWVALSYVVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGDK-ILEGSRCRQCSP 932          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 9.110e-24
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
            +NELTA+I+GD S  A W ALSYV+SA++ +L++FPGLRW+G L+CP+HGD ML   KA R GD+L LE + CPQCS
Sbjct:  408 DNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFVDKARRGGDKL-LEGSRCPQCS 483          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
            +NELTA+I+GD S  A W ALSYV+SA+R +L++FPGLRW+G L+CPQHGD ML    A R GD+L LE + CPQCS
Sbjct:  547 DNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDMARRGGDKL-LEGSRCPQCS 622          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.370e-23
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
            +NEL AQI+GD S   PW A SYV+SA+  +L++FPGL W+G L+CPQHGD ML  +KATR GD+  LE + CPQCS
Sbjct:  860 DNELIAQIFGDVSTPGPWGATSYVMSAVSLMLVDFPGLGWKGYLECPQHGDGMLFVNKATRDGDKF-LEGSRCPQCS 935          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: A0A6H5K2U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U4_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.100e-22
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
            +NE TA I+GD S  +PW ALSYV+SA+  ++ +FPGLR RG L+CPQHGD MLL +K TR GD+  LE +GCPQCS
Sbjct:  509 SNEPTANIFGDISTPSPWMALSYVMSAVSLMMRDFPGLRSRGSLKCPQHGDAMLLATKVTRPGDKF-LEGSGCPQCS 584          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.110e-22
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 NELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
            N LTAQI+GD S +A W ALSYV+SA+  +LL+FPGLRWRG L+CPQHGD +LL +K TR GD+ +  S  C QCS
Sbjct: 1093 NGLTAQIFGDTSFSAAWVALSYVMSAVSLMLLDFPGLRWRGSLKCPQHGDTILLTNKVTRAGDKFLAGSR-CQQCS 1167          
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.070e-22
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHGDPMLLDSKATRTGDQLVLESAGCPQCS 231
            NNELTA+I+GD S   PW ALSYV+SA+  ++ +FPGLR RG L+CPQHGD MLL +K  R GD+  LE + CPQCS
Sbjct:  784 NNELTAKIFGDISTPTPWMALSYVMSAVSLMMRDFPGLRSRGSLKCPQHGDAMLLATKVPRPGDKF-LEGSRCPQCS 859          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11754.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JYD1_9PHAE2.180e-3363.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHF4_9PHAE7.370e-2885.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC9_ECTSI1.340e-2669.23LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUD0_ECTSI2.650e-2464.10LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K516_9PHAE9.110e-2461.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K4_9PHAE1.250e-2362.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LJS7_ECTSI4.370e-2359.74LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K2U4_9PHAE1.100e-2261.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS7_ECTSI1.110e-2261.84LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUC3_ECTSI2.070e-2261.04LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11754contigE-siliculosus-1a_F_contig11754:252..923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size234
Model size234
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGH1
EC3.2.1.21
EggNOG OGs2CYK8@1,2S4YE@2759
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG koko:K01188
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
Seed eggNOG ortholog2880.D7FUC9
Seed ortholog evalue2.7e-22
Seed ortholog score110.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.1684766-CDS-E-siliculosus-1a_F_contig11754:251..3111622927696.1684766-CDS-E-siliculosus-1a_F_contig11754:251..311Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11754 252..311 -
1696318641.8427052-CDS-E-siliculosus-1a_F_contig11754:251..3111696318641.8427052-CDS-E-siliculosus-1a_F_contig11754:251..311Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11754 252..311 -
1622927696.1939104-CDS-E-siliculosus-1a_F_contig11754:749..9231622927696.1939104-CDS-E-siliculosus-1a_F_contig11754:749..923Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11754 750..923 -
1696318641.864781-CDS-E-siliculosus-1a_F_contig11754:749..9231696318641.864781-CDS-E-siliculosus-1a_F_contig11754:749..923Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11754 750..923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11754.1136.1prot_E-siliculosus-1a_F_contig11754.1136.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11754 252..923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11754.1136.1

>prot_E-siliculosus-1a_F_contig11754.1136.1 ID=prot_E-siliculosus-1a_F_contig11754.1136.1|Name=mRNA_E-siliculosus-1a_F_contig11754.1136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp
NNELTAQIYGDKSQAAPWAALSYVISAMRCVLLEFPGLRWRGLLQCPQHG
DPMLLDSKATRTGDQLVLESAGCPQCSP
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mRNA from alignment at E-siliculosus-1a_F_contig11754:252..923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11754.1136.1 ID=mRNA_E-siliculosus-1a_F_contig11754.1136.1|Name=mRNA_E-siliculosus-1a_F_contig11754.1136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11754:252..923- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACAATGAGCTCACCGCTCAGATATATGGCGATAAAAGCCAAGCTGCTCC GTGGGCGGCGCTTTCGTACGTCATCTCTGCCATGAGGTGTGTGCTGTTGG AGTTTCCAGGGCTGCGCTGGAGAGGCTTACTACAGTGTCCTCAGCATGGC GACCCTATGCTTTTGGACAGCAAGGTGAGCTATTTGGCTATTACTTTCTG GAAATGCATGGGTGCCCAGCAAACGCTCACGAAGTTTTCATTTTTGTGCA TCGTTGGGTGCTTTTGGCTTTCGGCCGCAACGGCCGTGCGATGCCTGCCT CTTTGTTGTTCACATTCAGGCCTATCAGTTGTCGCACAGAAAACATTTTG TGCGTAGTTTTGGGTGCTGCTCTGGTTTGTGTGGCACCTTCTCTTTGCTC TATGGATGAATAGACTACCGAAGGAGCCATTCAGGAACATTGTCCATACT CAGTTTCCGTTGGAAGCCCTCAACTTCGAGATCTGCGACCATACCATATT GCAAGGTAGCCCAACTTGCGGTTGATTGCGTGGATGGTTGCATGGGTGCC GTTGCTGAATTAGAGCATAACGCACCATCATCGATTTTCGGGATACTTAT TTCATCTCCCAGGCGACCCGCACAGGAGACCAACTTGTGCTGGAAAGCGC TGGATGCCCGCAATGCAGTCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11754:252..923-

>mRNA_E-siliculosus-1a_F_contig11754.1136.1 ID=mRNA_E-siliculosus-1a_F_contig11754.1136.1|Name=mRNA_E-siliculosus-1a_F_contig11754.1136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11754:252..923- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACAATGAGCTCACCGCTCAGATATATGGCGATAAAAGCCAAGCTGCTCC
GTGGGCGGCGCTTTCGTACGTCATCTCTGCCATGAGGTGTGTGCTGTTGG
AGTTTCCAGGGCTGCGCTGGAGAGGCTTACTACAGTGTCCTCAGCATGGC
GACCCTATGCTTTTGGACAGCAAGAACAATGAGCTCACCGCTCAGATATA
TGGCGATAAAAGCCAAGCTGCTCCGTGGGCGGCGCTTTCGTACGTCATCT
CTGCCATGAGGTGTGTGCTGTTGGAGTTTCCAGGGCTGCGCTGGAGAGGC
TTACTACAGTGTCCTCAGCATGGCGACCCTATGCTTTTGGACAGCAAGGC
GACCCGCACAGGAGACCAACTTGTGCTGGAAAGCGCTGGATGCCCGCAAT
GCAGTCCCGCGACCCGCACAGGAGACCAACTTGTGCTGGAAAGCGCTGGA
TGCCCGCAATGCAGTCCC
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