mRNA_E-siliculosus-1a_F_contig11751.1135.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11751.1135.1
Unique NamemRNA_E-siliculosus-1a_F_contig11751.1135.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11751.1135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11751contigE-siliculosus-1a_F_contig11751:118..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size198
Model size206
Exons1
Ec32 orthologEc-07_006080.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.1010284-CDS-E-siliculosus-1a_F_contig11751:117..3151622927696.1010284-CDS-E-siliculosus-1a_F_contig11751:117..315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11751 118..315 +
1696318641.8260937-CDS-E-siliculosus-1a_F_contig11751:117..3151696318641.8260937-CDS-E-siliculosus-1a_F_contig11751:117..315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11751 118..315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.1186743-UTR-E-siliculosus-1a_F_contig11751:315..3231622927696.1186743-UTR-E-siliculosus-1a_F_contig11751:315..323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11751 316..323 +
1696318641.833931-UTR-E-siliculosus-1a_F_contig11751:315..3231696318641.833931-UTR-E-siliculosus-1a_F_contig11751:315..323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11751 316..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11751.1135.1prot_E-siliculosus-1a_F_contig11751.1135.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11751 118..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11751.1135.1

>prot_E-siliculosus-1a_F_contig11751.1135.1 ID=prot_E-siliculosus-1a_F_contig11751.1135.1|Name=mRNA_E-siliculosus-1a_F_contig11751.1135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=66bp
MPSFLFADIHVGDTLHDKKPYAPPCIPLSPRSSLHAAEQKKKKTARLLIC
QKGKCSPSACKAPGQ*
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mRNA from alignment at E-siliculosus-1a_F_contig11751:118..323+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11751.1135.1 ID=mRNA_E-siliculosus-1a_F_contig11751.1135.1|Name=mRNA_E-siliculosus-1a_F_contig11751.1135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=206bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11751:118..323+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCTCCTTCCTGTTTGCTGACATCCACGTCGGGGATACACTCCACGA
CAAAAAACCCTACGCCCCCCCCTGCATACCCCTGAGTCCCCGGTCAAGCC
TCCACGCCGCAGAGCAAAAAAAAAAAAAAACAGCACGCCTTCTGATCTGT
CAAAAAGGAAAGTGCAGCCCGTCCGCTTGCAAGGCCCCGGGCCAGTAGAA
CTACCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11751:118..323+

>mRNA_E-siliculosus-1a_F_contig11751.1135.1 ID=mRNA_E-siliculosus-1a_F_contig11751.1135.1|Name=mRNA_E-siliculosus-1a_F_contig11751.1135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11751:118..323+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCTCCTTCCTGTTTGCTGACATCCACGTCGGGGATACACTCCACGA
CAAAAAACCCTACGCCCCCCCCTGCATACCCCTGAGTCCCCGGTCAAGCC
TCCACGCCGCAGAGCAAAAAAAAAAAAAAACAGCACGCCTTCTGATCTGT
CAAAAAGGAAAGTGCAGCCCGTCCGCTTGCAAGGCCCCGGGCCAGTAGAT
GCCCTCCTTCCTGTTTGCTGACATCCACGTCGGGGATACACTCCACGACA
AAAAACCCTACGCCCCCCCCTGCATACCCCTGAGTCCCCGGTCAAGCCTC
CACGCCGCAGAGCAAAAAAAAAAAAAAACAGCACGCCTTCTGATCTGTCA
AAAAGGAAAGTGCAGCCCGTCCGCTTGCAAGGCCCCGGGCCAGTAG
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