mRNA_E-siliculosus-1a_F_contig1175.1131.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1175.1131.1
Unique NamemRNA_E-siliculosus-1a_F_contig1175.1131.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: D7FS63_ECTSI (TGc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS63_ECTSI)

HSP 1 Score: 713 bits (1841), Expect = 5.350e-254
Identity = 385/462 (83.33%), Postives = 390/462 (84.42%), Query Frame = 2 
Query:  110 MNDRDDRRAEVDSRHSASGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICPTCHQEVPKNNDTSASAAGPAPVVAXXXXXASPGAPNKRKADHTADEFEPRAPKRRACVDRSKPRARLTLGQKLEILDLLDQKKMSRVEIAAVYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPE---MANGFRISAPAPAVAKRANQVVSLAGATTPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQMAEETTQVTETFEAFDEPGLFYSSPENFQRLPWPVRLVFGWIVKGPNSSIDAIRAEFAPPSVE 1486
            MNDRDDRRAEVDSRHSASGST                                                  ICPTCHQEVPKNNDTSA          XXXXX SPGAPNKRK+DHTADE EPRAPKRRACVDRSKPRARLTLGQKLEILDLLDQKKMSRVEIAA+YKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPE   MANGFRI APAPAV+KRANQVVSLAGATTPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVQLDG+V D GPP  SELG+DSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNG NEWDG SDSFCQMAEETTQVTETFEAFDEPGLFYSSPENFQRLPWPVRLVFGWIVKGPNSSIDAIRAEFAPPSVE
Sbjct:    1 MNDRDDRRAEVDSRHSASGSTPTSVPDSSSNSSEPTEPINSSTSGEPEVSAASDATGTGTDAETSTAVEVEICPTCHQEVPKNNDTSAXXXXXXXXXXXXXXXXSPGAPNKRKSDHTADECEPRAPKRRACVDRSKPRARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPERQKMANGFRIGAPAPAVSKRANQVVSLAGATTPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVQLDGRV-DGGPPDCSELGQDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGVNEWDGASDSFCQMAEETTQVTETFEAFDEPGLFYSSPENFQRLPWPVRLVFGWIVKGPNSSIDAIRAEFAPPSVE 461
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: A0A6H5LB97_9PHAE (TGc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB97_9PHAE)

HSP 1 Score: 496 bits (1277), Expect = 1.760e-171
Identity = 248/266 (93.23%), Postives = 255/266 (95.86%), Query Frame = 2 
Query:  731 MANGFRISAPAPAVAKRANQVVSLAGATTPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQMAEETTQVTETFEAFDEPGLFYSSPENFQRLPWPVRLVFGWIVKGPNSSIDAIRAEFAPPSVET*TSFVG*WNSPPP 1528
            MANGFRISAPAPAVAKRAN+VVSLAGATTPRAKAIALFVFVRDSIKFGFT+RFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEV+LDGQVGD  PPGSSELG+DSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGT DSFCQMAEETTQVTETF+AFDEPGLFYSSPENFQRLPWPVRLV GWIVK PNSSIDAIRAEF PPSVE  T+FV  W+ PPP
Sbjct:    1 MANGFRISAPAPAVAKRANKVVSLAGATTPRAKAIALFVFVRDSIKFGFTNRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVKLDGQVGDGDPPGSSELGQDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTLDSFCQMAEETTQVTETFDAFDEPGLFYSSPENFQRLPWPVRLVLGWIVKEPNSSIDAIRAEFVPPSVEKQTTFVV-WSKPPP 265
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: A0A6H5KX95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX95_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 2.240e-68
Identity = 157/208 (75.48%), Postives = 163/208 (78.37%), Query Frame = 2 
Query:  110 MNDRDDRRAEVDSRHSASGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICPTCHQEVPKNNDTSASAAGPAPVVAXXXXXASPGAPNKRKADHTADEFEPRAPKRRACVDRSKPRARLTLGQKLEILDLLDQKKMSRVEIAAVYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPEM 733
            MNDRDDRRAEV+SRHS+SGST                                XXXXXXXXXXXXXXXXX ICPTCHQEVPKNNDTSAS A       XXXXX SPGAP KRK +HTA+E EPRAPKRRACVDRSKPRARLTLGQKLEILDLLDQKKMSRVEIAA+YKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPE+
Sbjct:    1 MNDRDDRRAEVNSRHSSSGSTRTPVPDSSSNSSELTELINKSTSGEPEVSAESXXXXXXXXXXXXXXXXXEICPTCHQEVPKNNDTSASPAAAPXXXXXXXXXXSPGAPKKRKVNHTANECEPRAPKRRACVDRSKPRARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPEV 208
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: A0A2P5LYF4_9HYPH (TGc domain-containing protein n=1 Tax=Methylobacterium sp. TaxID=409 RepID=A0A2P5LYF4_9HYPH)

HSP 1 Score: 148 bits (374), Expect = 3.770e-37
Identity = 89/236 (37.71%), Postives = 120/236 (50.85%), Query Frame = 2 
Query:  764 PAVAKRANQVVSLAGATTPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQM--AEETTQVTETFEAFDEPGLFYSSPENFQ-RLPWPVRLVFGWIVKGPNSSIDAIRA 1462
            P +  RA  + +  G  + R +A+A+F FVRD I+FGF   F      + L  G G CN +  LF +LL+A GIPAR  FV++  G+LRG L P  A + HSY EV+L+G+                  WI  D YI D  LF  ARARL  E    GYG H +G  +WDG  D+F Q   A +     +TF  + +   FY +    Q RL +PV L+F       N +I  +RA
Sbjct:   38 PLIRDRARTITT--GLKSDRERALAIFRFVRDDIRFGFAGAFWRQKASDVLATGYGFCNTKSTLFVALLRAAGIPARPVFVDIDAGILRGFLDPGTAYVDHSYTEVELEGR------------------WIATDSYIIDAPLFRNARARLAAEGRALGYGTHRDGTPDWDGRRDAFVQWVAARDPAITRQTFGRYHDVADFYDNEARAQSRLGFPVSLIFPAFALRANRAIAQLRA 253
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: A0A0D2LGH8_9CHLO (TGc domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LGH8_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 4.880e-29
Identity = 64/157 (40.76%), Postives = 87/157 (55.41%), Query Frame = 2 
Query:  827 KAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQ 1297
            KA+ L+ FVRD+IKFG  ++FD     E L  G G CNP+  LF +LL+A  IPAR   V+++  V  G   P      H+Y EV LD Q                  W+++D Y+ D  LF AA++++ +    +GYGVH  G N+WDG SDSFCQ
Sbjct:   35 KALLLYFFVRDAIKFGIPAKFDNLKASEVLSLGYGFCNPKATLFVALLRAARIPARIHMVSINMAVNAGYGMPDNVYGDHAYTEVFLDSQ------------------WVKLDSYVVDAPLFAAAQSKIKQLGWVQGYGVHSKGVNDWDGLSDSFCQ 173
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: A0A2T5NKY2_9NEIS (TGc domain-containing protein n=3 Tax=Chromobacterium TaxID=535 RepID=A0A2T5NKY2_9NEIS)

HSP 1 Score: 121 bits (304), Expect = 1.280e-27
Identity = 69/175 (39.43%), Postives = 86/175 (49.14%), Query Frame = 2 
Query:  788 QVVSLAGATTPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPP-----PARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQ 1297
            QV S A     R    AL  FVRD ++FGFTS+F+  +PE TL  G GHCN QG L  +LL   GIPAR RFV L   VLR  +  P     P  L H  V+ +LDG+                  W+  D Y+ DP  F    ARL+   +  GYG+ +     W   +DSFCQ
Sbjct:   26 QVQSDASPDNDRDYCRALHDFVRDRVRFGFTSQFETVTPERTLALGRGHCNAQGDLLRALLTTAGIPARLRFVRLDKRVLRHAVPAPIYLCLPEHLFHGLVQARLDGR------------------WLHCDSYLFDPDGFERQYARLLASGLPRGYGLRLGADCRWSADADSFCQ 182
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: A0A2V0P809_9CHLO (TGc domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P809_9CHLO)

HSP 1 Score: 119 bits (298), Expect = 1.660e-26
Identity = 71/187 (37.97%), Postives = 92/187 (49.20%), Query Frame = 2 
Query:  764 PAVAKRANQVVSLAGATTPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQMAEETTQVT 1324
            P V +RA+ ++  AG    R  A+ ++ FVRD+IKFG   + D     E L  G     P+  LF +LL+A GIPAR   V+++  V  G   P      H+Y EV L G                   W ++D Y  D  LF AARARL      +GYG+H  G NEWDG SDSFCQ     T+ T
Sbjct:   24 PKVVERAHDIIDGAGDEVQR--ALLIYFFVRDAIKFGVPVKLDMLKASEVLALGYACATPKTTLFVALLRAVGIPARMHMVSINMAVNAGFGMPANVYGDHAYAEVFLHGC------------------WFKLDSYAVDAPLFAAARARLKALGWRQGYGIHRRGINEWDGMSDSFCQYLVRGTETT 190
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: A0A0J6NH75_9NEIS (TGc domain-containing protein n=13 Tax=Chromobacterium TaxID=535 RepID=A0A0J6NH75_9NEIS)

HSP 1 Score: 117 bits (292), Expect = 5.490e-26
Identity = 63/159 (39.62%), Postives = 80/159 (50.31%), Query Frame = 2 
Query:  836 ALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPP-----PARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQ 1297
            AL  FVRD ++FGFTS+F+  +PE TL  G GHCN QG L  +LL   GIPAR RFV L   VLR  +  P     P  L H  V+ +LDG+                  W+  D Y+ DP  F    ARL+   +  GYG+ +     W   +DSF Q
Sbjct:   42 ALHDFVRDRVRFGFTSQFETVTPERTLALGRGHCNAQGDLLRALLTTAGIPARLRFVRLDKRVLRHAVPAPVYLFLPEHLFHGLVQARLDGR------------------WLHCDSYLFDPDGFERQYARLLSSGLPRGYGLRLGADCRWSADADSFSQ 182
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: UPI001BCC6B92 (transglutaminase-like domain-containing protein n=1 Tax=Variovorax sp. PCZ-1 TaxID=2835533 RepID=UPI001BCC6B92)

HSP 1 Score: 116 bits (290), Expect = 7.850e-26
Identity = 74/222 (33.33%), Postives = 110/222 (49.55%), Query Frame = 2 
Query:  815 TPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPPPARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQMAEETTQVTETFE--AFDEPGLFYSSPENFQ-RLPWPVRLVFGWIVKGPNSSIDAIRAEFA 1471
            TPR KA+A+  FV+ S+ FG ++ +      + L+ G G C  +G L  +LL+  GIPAR RF++L    LRG++    + ++H+  EV L+ +                  WI  D Y+ D AL  AA ARLV EN + GYGVH++G+  W G  D+  Q  E+      T +    D+P  FY  P + + R  +  RL +       N  + AIR   A
Sbjct:   30 TPREKAVAIHDFVK-SLPFGCSADYSPLKASDVLKLGHGDCFTKGMLMVALLRCAGIPARLRFMSLPVHFLRGIIDAEESTIVHAMAEVFLEDR------------------WIVTDSYVPDEALQLAANARLVHENRSMGYGVHIHGSLYWTGKDDASAQCDEKDPSSLPTVDWGVADDPNSFYDHPSHSELRRNFATRLKWRLAAPVVNKRVAAIRMAHA 232
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BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Match: UPI001679C66A (hypothetical protein n=1 Tax=Paludibacterium paludis TaxID=1225769 RepID=UPI001679C66A)

HSP 1 Score: 114 bits (285), Expect = 3.840e-25
Identity = 65/172 (37.79%), Postives = 89/172 (51.74%), Query Frame = 2 
Query:  803 AGATTPRAKAIALFVFVRDSIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVNLSNGVLRGVLSPP-----PARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIRVDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQMA 1303
            A A + R   IA   FVRDSI+FGFT+RFD  +P+ TLE  +GHCNPQ  L  ++L   G  AR +FV L   +LRG  + P     PA + H+ +EV+ +G                  GWI +D YI  P +    RARL +  +  G+G     +  WDG S ++ Q A
Sbjct:   22 AQADSDRELMIAAHDFVRDSIRFGFTARFDDVTPQMTLERRLGHCNPQADLLRAMLAEAGFEARLKFVGLDKRLLRGATAEPVYRLLPAHVSHALLEVRGEG------------------GWIELDSYIFPPDMLRRRRARLAQAGLPCGFGTFEGASPVWDGDSPAYSQAA 175
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS63_ECTSI5.350e-25483.33TGc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LB97_9PHAE1.760e-17193.23TGc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KX95_9PHAE2.240e-6875.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P5LYF4_9HYPH3.770e-3737.71TGc domain-containing protein n=1 Tax=Methylobacte... [more]
A0A0D2LGH8_9CHLO4.880e-2940.76TGc domain-containing protein n=1 Tax=Monoraphidiu... [more]
A0A2T5NKY2_9NEIS1.280e-2739.43TGc domain-containing protein n=3 Tax=Chromobacter... [more]
A0A2V0P809_9CHLO1.660e-2637.97TGc domain-containing protein n=1 Tax=Raphidocelis... [more]
A0A0J6NH75_9NEIS5.490e-2639.62TGc domain-containing protein n=13 Tax=Chromobacte... [more]
UPI001BCC6B927.850e-2633.33transglutaminase-like domain-containing protein n=... [more]
UPI001679C66A3.840e-2537.79hypothetical protein n=1 Tax=Paludibacterium palud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1175contigE-siliculosus-1a_F_contig1175:9326..13098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1383
Model size1792
Exons2
Ec32 orthologEc-01_000700.1
Ec32 ortholog descriptionTransglutaminase-like
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2DPTS@1,2S6A9@2759
EggNOG free text desc.Transglutaminase-like superfamily
Seed eggNOG ortholog2880.D7FS63
Seed ortholog evalue5.7e-205
Seed ortholog score720.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1175.1131.1prot_E-siliculosus-1a_F_contig1175.1131.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1175 9435..12798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927695.5146244-UTR-E-siliculosus-1a_F_contig1175:9325..94341622927695.5146244-UTR-E-siliculosus-1a_F_contig1175:9325..9434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1175 9326..9434 +
1696318641.483929-UTR-E-siliculosus-1a_F_contig1175:9325..94341696318641.483929-UTR-E-siliculosus-1a_F_contig1175:9325..9434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1175 9326..9434 +
1622927695.5620193-UTR-E-siliculosus-1a_F_contig1175:12798..130981622927695.5620193-UTR-E-siliculosus-1a_F_contig1175:12798..13098Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1175 12799..13098 +
1696318641.5123668-UTR-E-siliculosus-1a_F_contig1175:12798..130981696318641.5123668-UTR-E-siliculosus-1a_F_contig1175:12798..13098Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1175 12799..13098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927695.5296695-CDS-E-siliculosus-1a_F_contig1175:9434..100551622927695.5296695-CDS-E-siliculosus-1a_F_contig1175:9434..10055Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 9435..10055 +
1696318641.4938595-CDS-E-siliculosus-1a_F_contig1175:9434..100551696318641.4938595-CDS-E-siliculosus-1a_F_contig1175:9434..10055Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 9435..10055 +
1622927695.5431652-CDS-E-siliculosus-1a_F_contig1175:12036..127981622927695.5431652-CDS-E-siliculosus-1a_F_contig1175:12036..12798Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 12037..12798 +
1696318641.5028448-CDS-E-siliculosus-1a_F_contig1175:12036..127981696318641.5028448-CDS-E-siliculosus-1a_F_contig1175:12036..12798Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 12037..12798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1175.1131.1

>prot_E-siliculosus-1a_F_contig1175.1131.1 ID=prot_E-siliculosus-1a_F_contig1175.1131.1|Name=mRNA_E-siliculosus-1a_F_contig1175.1131.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=461bp
MNDRDDRRAEVDSRHSASGSTSTPVPDSSSNSSDPTEHINSSTSGEPEVS
AASDATGTGTDAETSTAVEVEICPTCHQEVPKNNDTSASAAGPAPVVATA
AAAASPGAPNKRKADHTADEFEPRAPKRRACVDRSKPRARLTLGQKLEIL
DLLDQKKMSRVEIAAVYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGR
RSAGFPEMANGFRISAPAPAVAKRANQVVSLAGATTPRAKAIALFVFVRD
SIKFGFTSRFDAASPEETLEAGMGHCNPQGALFASLLQAQGIPARQRFVN
LSNGVLRGVLSPPPARLLHSYVEVQLDGQVGDDGPPGSSELGEDSLGWIR
VDGYIADPALFHAARARLVKENMTEGYGVHVNGANEWDGTSDSFCQMAEE
TTQVTETFEAFDEPGLFYSSPENFQRLPWPVRLVFGWIVKGPNSSIDAIR
AEFAPPSVET*
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mRNA from alignment at E-siliculosus-1a_F_contig1175:9326..13098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1175.1131.1 ID=mRNA_E-siliculosus-1a_F_contig1175.1131.1|Name=mRNA_E-siliculosus-1a_F_contig1175.1131.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3773bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1175:9326..13098+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCGGGCGAGAGACTGGGCAACCTGTGCTGTGTGTGTGCCAAGAGGAAGA
AACACGACCAATGTGAGAGAGGTGTGTTGAAGATCTGCAGAACAATCGAT
CACAAAGCTATGAATGACAGAGATGACCGACGAGCAGAGGTAGACAGCAG
GCACTCAGCATCGGGTTCAACGTCAACACCCGTTCCTGATAGCAGCAGCA
ACAGCAGTGACCCGACAGAACACATCAACAGCAGCACTAGCGGAGAACCG
GAGGTCTCAGCTGCATCAGATGCGACAGGAACAGGAACAGATGCAGAAAC
AAGTACCGCTGTAGAAGTGGAGATCTGTCCGACATGCCATCAAGAGGTGC
CGAAGAACAACGACACATCGGCATCAGCGGCGGGGCCGGCGCCTGTGGTA
GCAACAGCAGCAGCAGCAGCATCCCCAGGTGCTCCCAACAAACGAAAAGC
GGACCACACGGCGGACGAATTCGAGCCGCGAGCTCCCAAAAGACGGGCAT
GCGTGGACAGGAGCAAACCCCGGGCGCGCCTCACTCTAGGACAGAAGCTG
GAGATCCTGGACCTCCTCGATCAGAAGAAGATGAGCAGGGTGGAGATTGC
CGCCGTCTACAAGTGCTCGGACCGGACGGTGTCGAGTTGCTCCGTTAACC
GTACCATCCTTGAAGCCGAAGCCGCGTCGTCTACTCGCAAATTGAAGTCC
AAAGGGAGGCGCTCTGCAGGCTTCCCCGAGGTGTGTAACATGTCATGTTT
TAGATTTTTTGTAACCTTCAGAGTCGACTGCTGTGACAAACTGCTGCAGC
GGTTGACGGCTAGCGATGGATGAGACTGAAATGAGGTTTCAGACTTCCGA
TGCATTGCATTGTTGGATACGAACAATTTTTCGTTGCCCCTGTTGTTTTA
TAGCGCCCCTTACAATGCCGGTTGCGGAATAGGCAGCAATCGCTGAACGC
TAACAGCACACCCGTTCGGCACGTATGTGGCGAAATCCACACCGGCGTTG
TAGAAGTAGTTCGTCCCCTTCCACCGCGTTTTTAGAAAGTACGCATTAAT
CTCACAGACAGACCACCCGTTCGAGACAACACCACAGTCAAAGGGGATGT
GTTGAAGTCTTTACAGTGAGTGGGAAAGAAATCGCGTTTTTCTCCCTTGC
CGTTCACTGGAGGACGTGGCTGGCTCAACAGATGGTATCACTAAGGTGGC
TAGAAAGTTTATTCTCTTTTCATGTACCGGCTTACATACCCACGACCTTT
TGCAGGTGGACAGACGAGTCCTGTCCCTCATCAAGGCTTTCGAAAGCAGT
CAGATCCCTGTGGGCCGAACCACGATCGCGTCCTTTGGGCATGCCGTCAA
GGCTAGCTTATTAGCCGCAGAAGCTACGCCAGCGGAGGACAAGAAAAAGC
TTGAGAAGTTCGGCGCCAGCGAGAAATGGGTGAAGAACTTGGTGTCGCGC
AATGGGCTCGTCAGCAGACCACTGCTGCTCGCAGACGGCAGCGTGGTTGA
CTCCGGGCGCGTTCAAGCAAGAATGAAAGAAGTTCAGAAGGAGTTCAAGC
AGTACGACCTAGCGAATATCAGCTTCTACGATGGAGGAGTAGTGCCGAAG
CGCTCGTATCTGTCCTGTTCAGAGGCTGAAAACTTGGAGTTGGTGGAAGA
CAACGAAGACAACAGTTTGGATACCTGACCAGCGGAACCATGTTGCGCGG
TTGGGTATCCAAACCAAGCGGGTGTTGGTGGTGCGGTGATGCAGAGTATA
GAATTATGGTGACCGCGTTGTTTTTTCCCAAACGCGAGGATTGGTCGGCG
CGACCGCTGTGCCGCACGATAGTGTATATATGGAATATTTCCTCTGTTCA
TGGTCAATTGCGTGTGCCCTGATGCGGAGCTTGGCTTGATGGTGTTCTAC
AGTTTGGTTGCACGCAGGCTTGCAACGCAACTTGTGGGGTGTGTGGATAT
ATTATTCTAGTGTATCGCGTTAGAGTGGAACATAGAGCTTTCCTCGCCTG
GCCGAGATACAACAGAGCGCTGGCGACCTGGTGTTGCACGGCAGATCTTT
CCTGTGCGCGAAGGAGTGAGCGTGTTGTAGAGCTGAGCGTATGAACTGGA
GCTGGTTTGGTACGGTGGAATCAAGTGGCAGGGACAACGTTTACCCCTGT
GCAGGGTGATGTAGTGCGGTCACAGCGGGGACAACGTTTACCCCTGTGCA
GGGTGATGTAGTGCGGTCACAGCAGTGGACTTCAACAGTTTCAACGCTCA
CTTTGGCCAGCGCAGCGTATAGGGTGGGCCTGTCGTGGGGTACATCTCAA
GAACATGCTAACCACAGTCTCACAACAGCAGCGTAGGTTGACTTTCGGGG
AATCGGCCGAGCCCATTGCGCGGAAACAGACATTGCCCGAGTGCAGCTTT
GTTCGGCCATGATCAGATGTCTACATGTAGGACGCATTTCAACGTTGGGA
CAGAAACGAGATGCGGTTCAACTCCGTACGCACTTCTTTGTATCTCAAGC
TCCTGCACAAGTTACCGAAGACCACGCTGGTACGTTTTCTTCACACACGA
GGGCACCCTACCAAACCGTCATCCTTCAAGTTTCAAGCATGCTTCAACAA
CAAGCCTTTTACGATCGACTGCGCTATTTTTTCTCGGCAAGAATAACGTT
GAGCACGCGCCCCTCCTTCCTCCACCGCGTGTTCGGCTGCAAAACTCTCA
ATCGTCAAAAGATGGCAAACGGTTTCCGGATTAGCGCCCCGGCGCCTGCC
GTGGCGAAGCGAGCGAACCAAGTCGTGTCACTTGCTGGTGCAACTACCCC
GCGCGCGAAGGCCATCGCTCTCTTCGTGTTTGTCAGGGACTCGATCAAGT
TTGGGTTCACCAGCCGCTTCGACGCGGCCTCTCCCGAGGAAACACTGGAG
GCTGGTATGGGCCACTGCAACCCCCAGGGGGCATTGTTCGCGTCACTGTT
GCAGGCTCAGGGTATCCCCGCTAGGCAACGGTTCGTCAACCTTAGCAACG
GGGTGCTGCGCGGCGTCCTGTCGCCGCCCCCTGCTCGGCTTCTTCACAGC
TATGTTGAAGTCCAACTTGATGGGCAAGTTGGAGATGACGGCCCGCCAGG
CAGCAGCGAACTCGGAGAGGACAGTCTGGGCTGGATTCGAGTGGATGGTT
ACATCGCAGACCCGGCGCTGTTCCACGCCGCCCGGGCCAGGCTAGTGAAG
GAGAATATGACGGAGGGCTATGGGGTGCACGTTAACGGGGCAAACGAATG
GGATGGTACCTCGGACAGTTTTTGCCAGATGGCGGAGGAAACCACGCAGG
TCACGGAGACCTTCGAGGCCTTTGATGAGCCTGGGCTATTCTACAGTTCA
CCCGAGAATTTCCAACGCTTGCCGTGGCCAGTCCGCCTCGTTTTTGGGTG
GATCGTGAAAGGACCAAACTCGTCGATCGACGCCATTCGGGCGGAGTTCG
CACCCCCGTCTGTAGAGACGTAAACGAGTTTTGTTGGTTAGTGGAACTCC
CCCCCCCCGGTGTAGCTATCGATGCAGCCAAGACCTGGTAGTCTTCTCTG
TTGCGACGGTTCCGAAAGGTAGATCGCTCGAAGAGTGATCACACATACGG
ACATGAAGCGTTGAGTCGCATGTTGTGAGCGGGAAGTTCATCATGGATAT
AGGCGTGTTGATTCGAGAGGTAGTTGCTCCGCTCCGGCGCTCTCGCGTGC
GGGCCAACATTGTATTGCACGTTCTGGTCTGGGTAACGTAAATGGTGTCG
TGTTCAATCATCGAATAACAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1175:9326..13098+

>mRNA_E-siliculosus-1a_F_contig1175.1131.1 ID=mRNA_E-siliculosus-1a_F_contig1175.1131.1|Name=mRNA_E-siliculosus-1a_F_contig1175.1131.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2766bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1175:9326..13098+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATGACAGAGATGACCGACGAGCAGAGGTAGACAGCAGGCACTCAGC
ATCGGGTTCAACGTCAACACCCGTTCCTGATAGCAGCAGCAACAGCAGTG
ACCCGACAGAACACATCAACAGCAGCACTAGCGGAGAACCGGAGGTCTCA
GCTGCATCAGATGCGACAGGAACAGGAACAGATGCAGAAACAAGTACCGC
TGTAGAAGTGGAGATCTGTCCGACATGCCATCAAGAGGTGCCGAAGAACA
ACGACACATCGGCATCAGCGGCGGGGCCGGCGCCTGTGGTAGCAACAGCA
GCAGCAGCAGCATCCCCAGGTGCTCCCAACAAACGAAAAGCGGACCACAC
GGCGGACGAATTCGAGCCGCGAGCTCCCAAAAGACGGGCATGCGTGGACA
GGAGCAAACCCCGGGCGCGCCTCACTCTAGGACAGAAGCTGGAGATCCTG
GACCTCCTCGATCAGAAGAAGATGAGCAGGGTGGAGATTGCCGCCGTCTA
CAAGTGCTCGGACCGGACGGTGTCGAGTTGCTCCGTTAACCGTACCATCC
TTGAAGCCGAAGCCGCGTCGTCTACTCGCAAATTGAAGTCCAAAGGGAGG
CGCTCTGCAGGCTTCCCCGAGATGAATGACAGAGATGACCGACGAGCAGA
GGTAGACAGCAGGCACTCAGCATCGGGTTCAACGTCAACACCCGTTCCTG
ATAGCAGCAGCAACAGCAGTGACCCGACAGAACACATCAACAGCAGCACT
AGCGGAGAACCGGAGGTCTCAGCTGCATCAGATGCGACAGGAACAGGAAC
AGATGCAGAAACAAGTACCGCTGTAGAAGTGGAGATCTGTCCGACATGCC
ATCAAGAGGTGCCGAAGAACAACGACACATCGGCATCAGCGGCGGGGCCG
GCGCCTGTGGTAGCAACAGCAGCAGCAGCAGCATCCCCAGGTGCTCCCAA
CAAACGAAAAGCGGACCACACGGCGGACGAATTCGAGCCGCGAGCTCCCA
AAAGACGGGCATGCGTGGACAGGAGCAAACCCCGGGCGCGCCTCACTCTA
GGACAGAAGCTGGAGATCCTGGACCTCCTCGATCAGAAGAAGATGAGCAG
GGTGGAGATTGCCGCCGTCTACAAGTGCTCGGACCGGACGGTGTCGAGTT
GCTCCGTTAACCGTACCATCCTTGAAGCCGAAGCCGCGTCGTCTACTCGC
AAATTGAAGTCCAAAGGGAGGCGCTCTGCAGGCTTCCCCGAGATGGCAAA
CGGTTTCCGGATTAGCGCCCCGGCGCCTGCCGTGGCGAAGCGAGCGAACC
AAGTCGTGTCACTTGCTGGTGCAACTACCCCGCGCGCGAAGGCCATCGCT
CTCTTCGTGTTTGTCAGGGACTCGATCAAGTTTGGGTTCACCAGCCGCTT
CGACGCGGCCTCTCCCGAGGAAACACTGGAGGCTGGTATGGGCCACTGCA
ACCCCCAGGGGGCATTGTTCGCGTCACTGTTGCAGGCTCAGGGTATCCCC
GCTAGGCAACGGTTCGTCAACCTTAGCAACGGGGTGCTGCGCGGCGTCCT
GTCGCCGCCCCCTGCTCGGCTTCTTCACAGCTATGTTGAAGTCCAACTTG
ATGGGCAAGTTGGAGATGACGGCCCGCCAGGCAGCAGCGAACTCGGAGAG
GACAGTCTGGGCTGGATTCGAGTGGATGGTTACATCGCAGACCCGGCGCT
GTTCCACGCCGCCCGGGCCAGGCTAGTGAAGGAGAATATGACGGAGGGCT
ATGGGGTGCACGTTAACGGGGCAAACGAATGGGATGGTACCTCGGACAGT
TTTTGCCAGATGGCGGAGGAAACCACGCAGGTCACGGAGACCTTCGAGGC
CTTTGATGAGCCTGGGCTATTCTACAGTTCACCCGAGAATTTCCAACGCT
TGCCGTGGCCAGTCCGCCTCGTTTTTGGGTGGATCGTGAAAGGACCAAAC
TCGTCGATCGACGCCATTCGGGCGGAGTTCGCACCCCCGTCTGTAGAGAC
GTAAATGGCAAACGGTTTCCGGATTAGCGCCCCGGCGCCTGCCGTGGCGA
AGCGAGCGAACCAAGTCGTGTCACTTGCTGGTGCAACTACCCCGCGCGCG
AAGGCCATCGCTCTCTTCGTGTTTGTCAGGGACTCGATCAAGTTTGGGTT
CACCAGCCGCTTCGACGCGGCCTCTCCCGAGGAAACACTGGAGGCTGGTA
TGGGCCACTGCAACCCCCAGGGGGCATTGTTCGCGTCACTGTTGCAGGCT
CAGGGTATCCCCGCTAGGCAACGGTTCGTCAACCTTAGCAACGGGGTGCT
GCGCGGCGTCCTGTCGCCGCCCCCTGCTCGGCTTCTTCACAGCTATGTTG
AAGTCCAACTTGATGGGCAAGTTGGAGATGACGGCCCGCCAGGCAGCAGC
GAACTCGGAGAGGACAGTCTGGGCTGGATTCGAGTGGATGGTTACATCGC
AGACCCGGCGCTGTTCCACGCCGCCCGGGCCAGGCTAGTGAAGGAGAATA
TGACGGAGGGCTATGGGGTGCACGTTAACGGGGCAAACGAATGGGATGGT
ACCTCGGACAGTTTTTGCCAGATGGCGGAGGAAACCACGCAGGTCACGGA
GACCTTCGAGGCCTTTGATGAGCCTGGGCTATTCTACAGTTCACCCGAGA
ATTTCCAACGCTTGCCGTGGCCAGTCCGCCTCGTTTTTGGGTGGATCGTG
AAAGGACCAAACTCGTCGATCGACGCCATTCGGGCGGAGTTCGCACCCCC
GTCTGTAGAGACGTAA
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