mRNA_E-siliculosus-1a_F_contig1173.1125.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1173.1125.1 vs. uniprot
Match: D7FUP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP1_ECTSI) HSP 1 Score: 577 bits (1486), Expect = 8.590e-204 Identity = 336/395 (85.06%), Postives = 338/395 (85.57%), Query Frame = 1
Query: 10 MGHGDADWDWADPWGQGASWGAPGWAPGAERTPESQPGGSPPPAPSHTSKEELDGGHPTGSVPDGAGVAGSGWGRHHSGGGERPGVASTVAAGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVQAELRA----LQPVESTSCFVRNVVPGRRAALKEEEEGKAAALAXXTAAEEKTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSEAKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSEAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNE 1182
MGHGDADWDWADPWGQGASWGAPGWAPGAERTPESQPGGSPPPAPSHTSKEELDGGHP GSVPDGAGVAGSGWGRHHSGGGERPGVA TVAAGAA XXXXXXX RKVQAELR P FVR+VVPG+R ALKEEEEGKAAALA TAAEEKTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSEAKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSEAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNE
Sbjct: 1 MGHGDADWDWADPWGQGASWGAPGWAPGAERTPESQPGGSPPPAPSHTSKEELDGGHPIGSVPDGAGVAGSGWGRHHSGGGERPGVAPTVAAGAA------LGAGGEATADAAEKGATRNEGGVTELARAXXXXXXXLEEARKVQAELRQPTRRALPASRAPWFVRSVVPGKRTALKEEEEGKAAALAAATAAEEKTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSEAKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSEAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNE 389
BLAST of mRNA_E-siliculosus-1a_F_contig1173.1125.1 vs. uniprot
Match: A0A6H5K749_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K749_9PHAE) HSP 1 Score: 530 bits (1365), Expect = 1.280e-176 Identity = 351/394 (89.09%), Postives = 354/394 (89.85%), Query Frame = 1
Query: 1 YDGMGHGDADWDWADPWGQGASWGAPGWAPGAERTPESQPGGSPPPAPSHTSKEELDGGHPTGSVPDGAGVAGSGWGRHHSGGGERPGVASTVAAGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVQAELRALQPVESTSCFVRNVVPGRRAALKEEEEGKAAALAXXTAAEEKTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSEAKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSEAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNE 1182
YDGMGHGDADWDWADPWGQGASWGAPGWAPGAERT E QPGGSPPPAPS KEELDGGHP GSVPDG GVAGSGWGRHHSGGGERPGVAS VAAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+VQAELRA ALK+EEEGKAAALA T TEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSE KLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVS+AYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNE
Sbjct: 523 YDGMGHGDADWDWADPWGQGASWGAPGWAPGAERTQEIQPGGSPPPAPSPIFKEELDGGHPIGSVPDGTGVAGSGWGRHHSGGGERPGVASKVAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARQVQAELRA--------------------ALKKEEEGKAAALAAATXXXXXTEKAEAFALRQAESAKENATAAGQWLVSLGLEREELKGQLAAAQTNSTSLLEELSALKESAVEAELRANSSETKLRMAMEDIEVLDEGLKLFMDGDGQPRQQSSRAGPLSWRRVSDAYLRPLLPSKLKAPTPEELEALKLNRSLGRALENNTALAEAVSSKDDLVKELNSRIKQFQLHAVRRKKGYRALKLGLAELTNE 896 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1173.1125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1173.1125.1 >prot_E-siliculosus-1a_F_contig1173.1125.1 ID=prot_E-siliculosus-1a_F_contig1173.1125.1|Name=mRNA_E-siliculosus-1a_F_contig1173.1125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=392bp MGHGDADWDWADPWGQGASWGAPGWAPGAERTPESQPGGSPPPAPSHTSKback to top mRNA from alignment at E-siliculosus-1a_F_contig1173:30195..35111+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1173.1125.1 ID=mRNA_E-siliculosus-1a_F_contig1173.1125.1|Name=mRNA_E-siliculosus-1a_F_contig1173.1125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4917bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1173:30195..35111+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1173:30195..35111+ >mRNA_E-siliculosus-1a_F_contig1173.1125.1 ID=mRNA_E-siliculosus-1a_F_contig1173.1125.1|Name=mRNA_E-siliculosus-1a_F_contig1173.1125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2352bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1173:30195..35111+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |