mRNA_E-siliculosus-1a_F_contig1172.1119.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1172.1119.1
Unique NamemRNA_E-siliculosus-1a_F_contig1172.1119.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1172.1119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1172contigE-siliculosus-1a_F_contig1172:2434..6001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size672
Model size672
Exons6
Ec32 orthologEc-18_000820.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1172.1119.1prot_E-siliculosus-1a_F_contig1172.1119.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1172 2434..6001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927693.2992284-CDS-E-siliculosus-1a_F_contig1172:2433..26261622927693.2992284-CDS-E-siliculosus-1a_F_contig1172:2433..2626Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 2434..2626 +
1696318640.5050502-CDS-E-siliculosus-1a_F_contig1172:2433..26261696318640.5050502-CDS-E-siliculosus-1a_F_contig1172:2433..2626Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 2434..2626 +
1622927693.319847-CDS-E-siliculosus-1a_F_contig1172:3241..33391622927693.319847-CDS-E-siliculosus-1a_F_contig1172:3241..3339Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 3242..3339 +
1696318640.5145638-CDS-E-siliculosus-1a_F_contig1172:3241..33391696318640.5145638-CDS-E-siliculosus-1a_F_contig1172:3241..3339Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 3242..3339 +
1622927693.3345375-CDS-E-siliculosus-1a_F_contig1172:3831..38931622927693.3345375-CDS-E-siliculosus-1a_F_contig1172:3831..3893Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 3832..3893 +
1696318640.5234756-CDS-E-siliculosus-1a_F_contig1172:3831..38931696318640.5234756-CDS-E-siliculosus-1a_F_contig1172:3831..3893Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 3832..3893 +
1622927693.353227-CDS-E-siliculosus-1a_F_contig1172:4509..45901622927693.353227-CDS-E-siliculosus-1a_F_contig1172:4509..4590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 4510..4590 +
1696318640.532914-CDS-E-siliculosus-1a_F_contig1172:4509..45901696318640.532914-CDS-E-siliculosus-1a_F_contig1172:4509..4590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 4510..4590 +
1622927693.3694704-CDS-E-siliculosus-1a_F_contig1172:5210..53381622927693.3694704-CDS-E-siliculosus-1a_F_contig1172:5210..5338Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 5211..5338 +
1696318640.5423603-CDS-E-siliculosus-1a_F_contig1172:5210..53381696318640.5423603-CDS-E-siliculosus-1a_F_contig1172:5210..5338Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 5211..5338 +
1622927693.3840523-CDS-E-siliculosus-1a_F_contig1172:5891..60011622927693.3840523-CDS-E-siliculosus-1a_F_contig1172:5891..6001Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 5892..6001 +
1696318640.5537796-CDS-E-siliculosus-1a_F_contig1172:5891..60011696318640.5537796-CDS-E-siliculosus-1a_F_contig1172:5891..6001Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1172 5892..6001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1172.1119.1

>prot_E-siliculosus-1a_F_contig1172.1119.1 ID=prot_E-siliculosus-1a_F_contig1172.1119.1|Name=mRNA_E-siliculosus-1a_F_contig1172.1119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp
MPTSKHRRRQVDSSSKGASMSSAHRKRRRCRHRSARTSWRHVMPPSSSRT
LLCYVAAMFCRSVRGTIGTYYSSNCYEVGGGNMGPLYLECTGCQYTEAFE
CLETLRGNASHNVPSGCGMNILTVQPDPTCCPVFEDPDNQRSLDSSTSAY
PDALLCLENAGCEGDNLHTNLKEECVFNLCNEEFACVAAYSGSWRLSPAV
GTAVTLALAVARIPTSLGLGPGG*
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mRNA from alignment at E-siliculosus-1a_F_contig1172:2434..6001+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1172.1119.1 ID=mRNA_E-siliculosus-1a_F_contig1172.1119.1|Name=mRNA_E-siliculosus-1a_F_contig1172.1119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3568bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1172:2434..6001+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGACGAGTAAGCACAGACGCCGGCAAGTTGACAGCTCTTCAAAGGG
AGCATCGATGTCGTCTGCCCATAGAAAAAGGCGGCGATGTCGTCACCGCT
CGGCGAGGACCTCTTGGAGACACGTCATGCCCCCGAGCTCTTCACGGACC
TTGTTGTGTTACGTTGCAGCAATGTTTTGCCGATCTGTACGAGGTGCGCG
GCGTGTTTTGGTTTCGATGTGTTCATGTCGTATGTTGCGGCACAAACTCT
CCGCACGCTCTGCTGTAGAGTATTGAAAGTAGACATGAGACACGGGCACC
CACGCCAGAGAATACCTGTATTGTACACGAACTGCAGCCTATCTTCAGGA
TCCGGCACATTTTCCGCCACCCTTTCATCCAAAAAGCTGCCATCTTTAAT
ATGGCAATGTTTGAATTCGGATCAACTACTACATACACCGCCGAGCACAG
CCATACACACACACGCAGTGCAGCGGCTGCGCCAGGTCTGTCGTAGACTT
TGTGAACGGCATATCTGTCGAGTGGCGCGGGAGCTACATGATGTGCCACA
TTCATGTGAATGTACTGTACGCGTATTGTTGCAGTTGAAAGCCCGTCGGC
CATATCAACCGACCGGCAGTACGACCCATACATACAATGAAGTAGCGTGT
TTCTGGTACCTCGTTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT
GTCTGTCTGTCTGTCTGTCTTCAACTCTTTCTCCAGTATCCGTGCGCTTC
CTGGTCTTTCTCGCACCTCGTCCGAATAACCCCTTGCCTCTTGACATCGT
TGTCCCAGGAACCATCGGCACGTACTATTCGTCCAACTGCTACGAGGTGG
GCGGCGGGAATATGGGCCCTTTGTATCTCGAATGCACCGGCTGCCAGTAC
ACTGAGGTAAGCGTTTATCCGGCTGAGTGTACCTTTAGTGTAATGGGTTA
TCGACTCATGTGCAGTGTAAGTTAGTGGGGTCGAGAGCACGTTTGGTCGT
TCAGAATATTAATCGGAGATCGTGACGGTTTGCGAGTGGAAAGTCAACAA
CAACGACAACGATGACAACGAAGGGATGGCGACGACGACGACAACGACGA
CGACAACAACAACAACAACAAGAGCAGAAACAATAACAAAACCAACTCCA
ACAACCACAACAACACCATCACCACCAACAACATCAGCACAGCTGCAGTT
CTTTTTCAGGGATCTAACTACATAAACAGCGTGCTTAGGACTGGACACTC
GTCTGGGCAGAGTGGTCGGTGGGTACCTTTGGCCAAATAGCCCCGAACAT
GTTCTGCCGTTGTGGCCAAACAACCCTGTACATTGGCCACAGACGGTATC
TACTCTGTTCCAACTCCAACTTCCCGTTTTGACCGCTGTCTTGCTCAGGC
GTTCGAGTGTCTGGAAACGCTGAGGGGAAACGCATCCCATAACGTGCCAA
GCGGCTGCGGGTGAGAGGTCATTACGAGTGAAGCAGCGGATAACCTTACA
AGTAGCTCTCAGGCTACTCGCCAAAATGAGTGTGGTTTGCGGGTTGTTGG
TTCGTTTGGCTACCAGCGCTTTGACAAGAACCGCGATGCTCGCGATCGGT
TTCGTTCCTTGAGAGCCGGCTTGATGATAGCACAAGCACCGTAGAAAAAA
ACACACGGTGTATATTCAAGAACGTCGTGGCATCGAACACCTTTACTCGT
TGATCGGGTTTCCCTGCGTCTCTGCGGGGACGTCTCGAAACGGGACACAC
CCACCTCGCCTACAAAGCTACAGCATTGGTTTTAGCCAAGGCAGGACACG
AGACACGTATGGTGACTCCTCCTACAGTACCTCCCTCACGGTATTAAAGG
CGACAACCAGCACCCCGTTTGCAAACCTTTCACCGCAGGTAGCATATCGT
GCTACGGAACGCTTCACGCATGAATCACCATACGTACTTGAGAGCCTACA
TCTGTAACACCGAATCCCTTCTGCAAGGCGCTTTGTTGGGATAAATACAT
GGCAATAGGCCAACCCCACCCCGAACGTCGTACATCGTCTAACACAATTC
ATCGTGTCTCGAATACAATTGGACAGAATGAACATTTTGACGGTGCAGCC
AGACCCGACCTGCTGCCCAGTATTCGAGGACCCAGACAACCAGAGATCAC
TCGACAGGTAACCGTACGATTTGGAAAAATTCTATGCATAAGACAGAACG
GCAGGTTGCTGTTTCCTTACAGAATGACGACGTCGACGAAATGGCAACGT
ATCGATGTTGATTGCCCTCAATTGGGCCCAAACTCAGCGGAGTCACCGGT
CAAAATATCACTCGTGGCCAGAGGGAAAGGTTGGGGCACCGATGACAACC
TGCAGAGGTTGGGGTGGGGAGGCTGGGAGGGCGGGGTCTGCCTTGAACAC
GTTGTTTGCCTGCGCTGCCAGCCCGCCATGCTAGTTGGATTAACGCCACT
ATCCGAGACTACGTGAGTAGCTGTACGCTTCGGCATGCAACCTTCCCACC
CCAGGTTGTAGTCGGTGCCAAACCTACCCATAACCTGGCCTCTGGCCATC
CGTGTATGCCTCGTTGGTGTATCACGACATTCTGTATTGCGTGCATCCGG
AGACCAGTATATGCTGGCGTATCCCATCGCGTATTGCGATTGCAATATGG
GAGGGATGCGAGGTCAAAGATCGAACGACTGTCGCGTTACATGAGTACAC
CCCCGCGCATCTTACGACGATAGACAAAAAACCTGATGCACTACGGGGCT
GTCGTTCTCGTTCACCGATCGATGCAGTTCGACATCCGCCTACCCAGACG
CTCTGCTTTGCCTCGAGAACGCTGGCTGCGAGGGGGACAACCTTCACACC
AATCTCAAGGAGGAGTGCGTGTTCAACCTGTGCAACGAAGAGTTCGCCTG
TGTAGGTGAGGGAAAACCCTCTTATCCCAGGCGTCTATTTCAAGCGAAGG
TGTTTGCCCACGGTTAAGAAGGCAGGGAGCCGCCCGGCACGCAGCAACTC
AGCAAGCATGTCACCTATCGGTACAGGCTCAATCGACATGCCACTCTTGC
AACCGCTTGCTACAGGGGCGGGACGGGTCTGTAAGGAGTAATCTGTGCCG
CTATCAGCCCCGCCGTACCCCCTTCGCTGGTTTGCACCGCGCTGTGTAGC
CATGCCGGTCTATTTGATTCCTCCAGAGCGGGGTTGTTGTACGGGCAGCA
CGCCAACCGGCTCGTGTGTAGCTGTGGCACTCGCCAGCCGTAACGAAGAT
CCCCCCCCCGGATCAGTTATTCCCCGAACGGGAGGGGTGGCGAAGACCGG
GTCAAGCCATTTATTTCTGTTGAGAAGATATTTCGAACTTCGCCCAGGTG
GTGTCATGATTGTTGCTTGCACGTGGCGCACAGATCCTTTCTTTCCTAAG
GTCTTCGACTAATGTGTACCCTTTTGCGTCAAGCACATCCCAAACGAAAC
ATTGACAGCGGCGTACTCGGGCTCTTGGCGACTATCTCCCGCCGTTGGGA
CGGCCGTAACTCTGGCTCTGGCCGTGGCGAGGATACCCACGTCGCTTGGA
CTCGGCCCGGGAGGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1172:2434..6001+

>mRNA_E-siliculosus-1a_F_contig1172.1119.1 ID=mRNA_E-siliculosus-1a_F_contig1172.1119.1|Name=mRNA_E-siliculosus-1a_F_contig1172.1119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1172:2434..6001+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGACGAGTAAGCACAGACGCCGGCAAGTTGACAGCTCTTCAAAGGG
AGCATCGATGTCGTCTGCCCATAGAAAAAGGCGGCGATGTCGTCACCGCT
CGGCGAGGACCTCTTGGAGACACGTCATGCCCCCGAGCTCTTCACGGACC
TTGTTGTGTTACGTTGCAGCAATGTTTTGCCGATCTGTACGAGATGCCGA
CGAGTAAGCACAGACGCCGGCAAGTTGACAGCTCTTCAAAGGGAGCATCG
ATGTCGTCTGCCCATAGAAAAAGGCGGCGATGTCGTCACCGCTCGGCGAG
GACCTCTTGGAGACACGTCATGCCCCCGAGCTCTTCACGGACCTTGTTGT
GTTACGTTGCAGCAATGTTTTGCCGATCTGTACGAGGAACCATCGGCACG
TACTATTCGTCCAACTGCTACGAGGTGGGCGGCGGGAATATGGGCCCTTT
GTATCTCGAATGCACCGGCTGCCAGTACACTGAGGAACCATCGGCACGTA
CTATTCGTCCAACTGCTACGAGGTGGGCGGCGGGAATATGGGCCCTTTGT
ATCTCGAATGCACCGGCTGCCAGTACACTGAGGCGTTCGAGTGTCTGGAA
ACGCTGAGGGGAAACGCATCCCATAACGTGCCAAGCGGCTGCGGGCGTTC
GAGTGTCTGGAAACGCTGAGGGGAAACGCATCCCATAACGTGCCAAGCGG
CTGCGGAATGAACATTTTGACGGTGCAGCCAGACCCGACCTGCTGCCCAG
TATTCGAGGACCCAGACAACCAGAGATCACTCGACAGAATGAACATTTTG
ACGGTGCAGCCAGACCCGACCTGCTGCCCAGTATTCGAGGACCCAGACAA
CCAGAGATCACTCGACAGTTCGACATCCGCCTACCCAGACGCTCTGCTTT
GCCTCGAGAACGCTGGCTGCGAGGGGGACAACCTTCACACCAATCTCAAG
GAGGAGTGCGTGTTCAACCTGTGCAACGAAGAGTTCGCCTGTGTAGTTCG
ACATCCGCCTACCCAGACGCTCTGCTTTGCCTCGAGAACGCTGGCTGCGA
GGGGGACAACCTTCACACCAATCTCAAGGAGGAGTGCGTGTTCAACCTGT
GCAACGAAGAGTTCGCCTGTGTAGCGGCGTACTCGGGCTCTTGGCGACTA
TCTCCCGCCGTTGGGACGGCCGTAACTCTGGCTCTGGCCGTGGCGAGGAT
ACCCACGTCGCTTGGACTCGGCCCGGGAGGGTGACGGCGTACTCGGGCTC
TTGGCGACTATCTCCCGCCGTTGGGACGGCCGTAACTCTGGCTCTGGCCG
TGGCGAGGATACCCACGTCGCTTGGACTCGGCCCGGGAGGGTGA
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