mRNA_E-siliculosus-1a_F_contig1171.1116.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1171.1116.1
Unique NamemRNA_E-siliculosus-1a_F_contig1171.1116.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1171.1116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1171contigE-siliculosus-1a_F_contig1171:28095..28691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size303
Model size599
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927692.3004904-UTR-E-siliculosus-1a_F_contig1171:28094..283881622927692.3004904-UTR-E-siliculosus-1a_F_contig1171:28094..28388Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1171 28095..28388 +
1696318640.1242793-UTR-E-siliculosus-1a_F_contig1171:28094..283881696318640.1242793-UTR-E-siliculosus-1a_F_contig1171:28094..28388Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1171 28095..28388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927692.3206253-CDS-E-siliculosus-1a_F_contig1171:28388..286911622927692.3206253-CDS-E-siliculosus-1a_F_contig1171:28388..28691Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 28389..28691 +
1696318640.1333582-CDS-E-siliculosus-1a_F_contig1171:28388..286911696318640.1333582-CDS-E-siliculosus-1a_F_contig1171:28388..28691Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 28389..28691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1171.1116.1prot_E-siliculosus-1a_F_contig1171.1116.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1171 28389..28691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1171.1116.1

>prot_E-siliculosus-1a_F_contig1171.1116.1 ID=prot_E-siliculosus-1a_F_contig1171.1116.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MKSSEKTTETQINTCAAERPDARRHKAVSSSVREPSVRRYDLLKKTKPAL
ARTHPPRGRTPSKTSGDSKELPRYRWSQPSMTRAYLRKSVLDTGLSSPPA
P
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mRNA from alignment at E-siliculosus-1a_F_contig1171:28095..28691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1171.1116.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1116.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=597bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:28095..28691+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTCGTTTATGTATCCTCTTCGTCGTCGAGTAATCGAGCTTTGAAAATCG
GTCCCGGGGGTATGTTATCTTGTGTCATATACGGTAATCTGCACCGCATA
CGCACACCGCTAAGTAGTCTGTAGCGAGAGATGATACAAAAGAATCTTTA
GGTAATGCCAACACAGCTCCTGATGATGCCGGCGCCAGCAGCAAGGCCTC
CCTCCGCAGAGCACAGAAAGGGGGCTATCTGTGCCTATATGGGCAAGAGT
CGTCGTGTGACGGCAACACACACAACCAAGTAAAATCAGGAATAATGAAG
TCTTCGGAAAAGACGACGGAAACACAAATAAACACATGCGCCGCCGAGAG
ACCCGACGCACGGCGGCACAAGGCAGTATCATCGTCGGTCCGGGAACCGT
CTGTGCGCCGTTACGATTTGCTCAAAAAGACAAAACCCGCGCTCGCACGC
ACACACCCGCCACGGGGAAGAACACCTAGCAAAACATCAGGTGACAGCAA
AGAACTGCCAAGGTACCGCTGGTCCCAACCTTCCATGACACGTGCATACC
TACGTAAGTCGGTCCTTGACACAGGTTTATCATCACCCCCCGCCCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1171:28095..28691+

>mRNA_E-siliculosus-1a_F_contig1171.1116.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1116.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:28095..28691+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGTCTTCGGAAAAGACGACGGAAACACAAATAAACACATGCGCCGC
CGAGAGACCCGACGCACGGCGGCACAAGGCAGTATCATCGTCGGTCCGGG
AACCGTCTGTGCGCCGTTACGATTTGCTCAAAAAGACAAAACCCGCGCTC
GCACGCACACACCCGCCACGGGGAAGAACACCTAGCAAAACATCAGGTGA
CAGCAAAGAACTGCCAAGGTACCGCTGGTCCCAACCTTCCATGACACGTG
CATACCTACGTAAGTCGGTCCTTGACACAGGTTTATCATCACCCCCCGCC
CCCATGAAGTCTTCGGAAAAGACGACGGAAACACAAATAAACACATGCGC
CGCCGAGAGACCCGACGCACGGCGGCACAAGGCAGTATCATCGTCGGTCC
GGGAACCGTCTGTGCGCCGTTACGATTTGCTCAAAAAGACAAAACCCGCG
CTCGCACGCACACACCCGCCACGGGGAAGAACACCTAGCAAAACATCAGG
TGACAGCAAAGAACTGCCAAGGTACCGCTGGTCCCAACCTTCCATGACAC
GTGCATACCTACGTAAGTCGGTCCTTGACACAGGTTTATCATCACCCCCC
GCCCCC
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