mRNA_E-siliculosus-1a_F_contig1171.1115.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1171.1115.1
Unique NamemRNA_E-siliculosus-1a_F_contig1171.1115.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1171.1115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1171contigE-siliculosus-1a_F_contig1171:25778..26152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size375
Model size376
Exons1
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927692.2506983-CDS-E-siliculosus-1a_F_contig1171:25777..261521622927692.2506983-CDS-E-siliculosus-1a_F_contig1171:25777..26152Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 25778..26152 +
1696318640.114551-CDS-E-siliculosus-1a_F_contig1171:25777..261521696318640.114551-CDS-E-siliculosus-1a_F_contig1171:25777..26152Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 25778..26152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1171.1115.1prot_E-siliculosus-1a_F_contig1171.1115.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1171 25778..26152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1171.1115.1

>prot_E-siliculosus-1a_F_contig1171.1115.1 ID=prot_E-siliculosus-1a_F_contig1171.1115.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1115.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=125bp
GGVHVQGAVLYGFDGFCSVACLCSCPWRCRVGTGGREKHEEFRAGVEEPF
ACVFGLAVFFFLGNLVCARALGSTSSCTSRILSESSSSGRPITRRMLSCH
TKNCVCSCGVSCGGGEGGGGGGGR*
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mRNA from alignment at E-siliculosus-1a_F_contig1171:25778..26152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1171.1115.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1115.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1115.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=375bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:25778..26152+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGCGTTCACGTGCAAGGTGCCGTACTTTACGGGTTTGACGGTTTTTG
TTCTGTGGCTTGTCTCTGTTCGTGCCCCTGGCGATGCAGAGTGGGGACTG
GAGGGAGGGAGAAACATGAGGAGTTTCGCGCGGGGGTTGAAGAACCATTT
GCTTGCGTTTTTGGCCTTGCTGTTTTCTTTTTTCTAGGTAATTTGGTGTG
CGCCCGCGCTCTTGGAAGCACATCTTCCTGCACCTCTCGGATTCTGAGCG
AAAGCAGCAGCAGTGGTAGACCAATAACACGCAGAATGCTTTCTTGCCAC
ACGAAAAATTGTGTGTGTTCTTGTGGGGTAAGCTGTGGCGGTGGAGAAGG
GGGTGGGGGGGGGGGGGGGCGATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1171:25778..26152+

>mRNA_E-siliculosus-1a_F_contig1171.1115.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1115.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1115.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:25778..26152+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGCGTTCACGTGCAAGGTGCCGTACTTTACGGGTTTGACGGTTTTTG
TTCTGTGGCTTGTCTCTGTTCGTGCCCCTGGCGATGCAGAGTGGGGACTG
GAGGGAGGGAGAAACATGAGGAGTTTCGCGCGGGGGTTGAAGAACCATTT
GCTTGCGTTTTTGGCCTTGCTGTTTTCTTTTTTCTAGGTAATTTGGTGTG
CGCCCGCGCTCTTGGAAGCACATCTTCCTGCACCTCTCGGATTCTGAGCG
AAAGCAGCAGCAGTGGTAGACCAATAACACGCAGAATGCTTTCTTGCCAC
ACGAAAAATTGTGTGTGTTCTTGTGGGGTAAGCTGTGGCGGTGGAGAAGG
GGGTGGGGGGGGGGGGGGGCGATAGGGGGGCGTTCACGTGCAAGGTGCCG
TACTTTACGGGTTTGACGGTTTTTGTTCTGTGGCTTGTCTCTGTTCGTGC
CCCTGGCGATGCAGAGTGGGGACTGGAGGGAGGGAGAAACATGAGGAGTT
TCGCGCGGGGGTTGAAGAACCATTTGCTTGCGTTTTTGGCCTTGCTGTTT
TCTTTTTTCTAGGTAATTTGGTGTGCGCCCGCGCTCTTGGAAGCACATCT
TCCTGCACCTCTCGGATTCTGAGCGAAAGCAGCAGCAGTGGTAGACCAAT
AACACGCAGAATGCTTTCTTGCCACACGAAAAATTGTGTGTGTTCTTGTG
GGGTAAGCTGTGGCGGTGGAGAAGGGGGTGGGGGGGGGGGGGGGCGATAG
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