mRNA_E-siliculosus-1a_F_contig1171.1114.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1171.1114.1
Unique NamemRNA_E-siliculosus-1a_F_contig1171.1114.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1114.1 vs. uniprot
Match: A0A6H5KKT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT2_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.400e-49
Identity = 261/349 (74.79%), Postives = 263/349 (75.36%), Query Frame = 3 
Query:  324 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPAALADDRAATAGGDDGGSVGSGGRSAFSPGVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAPYAANAAEAXXXXXXXXXXXXXXXXXXXARXXXXXXXXXXXXXXGAGIGRGQHAVARSXXXXXXXXXXXXXXXXXXXXXXXXXXXFLFDMEGLKETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGRDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAREVSYAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC 1370
            MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYP YDSPPA                 V SGGRSAFSP VSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAP AA     XXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXXXXXX  FDMEGLKET XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  V+GR+                                     A EVS AGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC
Sbjct:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPQYDSPPAXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAPAAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDMEGLKETTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-VEGRNNAGAPCRGVVPQQQEGTTARTAAGRGLSPAEAAAGGAACEVSCAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC 345
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1114.1 vs. uniprot
Match: D8LHJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ3_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 5.190e-32
Identity = 73/94 (77.66%), Postives = 73/94 (77.66%), Query Frame = 3 
Query:  324 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPAALADDRAATAGGDDGGSVGSGGRSAFSPGVSDYAGVFEAGFDPAQ 605
            MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSP                   V SGGRSAFSP VSDYAGVFEAGFDPAQ
Sbjct:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPXXXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1171.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKT2_9PHAE1.400e-4974.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHJ3_ECTSI5.190e-3277.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1171contigE-siliculosus-1a_F_contig1171:20862..23808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1050
Model size2947
Exons1
Ec32 orthologEc-10_002120.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1171.1114.1prot_E-siliculosus-1a_F_contig1171.1114.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1171 21185..22234 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927692.929785-UTR-E-siliculosus-1a_F_contig1171:20861..211841622927692.929785-UTR-E-siliculosus-1a_F_contig1171:20861..21184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1171 20862..21184 +
1696318640.3566499-UTR-E-siliculosus-1a_F_contig1171:20861..211841696318640.3566499-UTR-E-siliculosus-1a_F_contig1171:20861..21184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1171 20862..21184 +
1622927693.018846-UTR-E-siliculosus-1a_F_contig1171:22234..238081622927693.018846-UTR-E-siliculosus-1a_F_contig1171:22234..23808Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1171 22235..23808 +
1696318640.3710818-UTR-E-siliculosus-1a_F_contig1171:22234..238081696318640.3710818-UTR-E-siliculosus-1a_F_contig1171:22234..23808Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1171 22235..23808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927693.008565-CDS-E-siliculosus-1a_F_contig1171:21184..222341622927693.008565-CDS-E-siliculosus-1a_F_contig1171:21184..22234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 21185..22234 +
1696318640.3637516-CDS-E-siliculosus-1a_F_contig1171:21184..222341696318640.3637516-CDS-E-siliculosus-1a_F_contig1171:21184..22234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 21185..22234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1171.1114.1

>prot_E-siliculosus-1a_F_contig1171.1114.1 ID=prot_E-siliculosus-1a_F_contig1171.1114.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=350bp
MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPAA
LADDRAATAGGDDGGSVGSGGRSAFSPGVSDYAGVFEAGFDPAQVRASMS
KEVVEVGQAGAPYAANAAEAAAALVVEERRAFAAGGGGDARDSREWRDDD
DGDEGGAGIGRGQHAVARSSAAALAAGGGVAREEDDPLSCCEEEEDFLFD
MEGLKETTFFEDQQEDNNNNDRRDSSGSSSMRATAAAAAADYYGYSKGGG
WGATTTAAAAAAPAEVKGRDTGGASRRGIVPQQQEGTTARTAAGRGLSPA
AAAGGGGAREVSYAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC*
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mRNA from alignment at E-siliculosus-1a_F_contig1171:20862..23808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1171.1114.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1114.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2947bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:20862..23808+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGACATCACCCACACACATACATACACGCGACGACGCTCGCTTGCTCTCT
CCGCCCAGCAAAGGAAAATCACCGGCGAGTGTTCATCGGTGCGGTTCGTC
AGCGATCACCTGGTTTGCCTCCCCCCGTTCCTCTCTCTCTCCCTGCTTCC
CCCGGAGTTTTCCGCTTCAAGAAAAGAGAGGAGACAGCCGGCGAAACGAA
CCCCACGGAAACACAGCGACAACGACCAACACACCCTTTTGACCCAGAAG
CAGCTGCGCTGTGTGTTCCGTCTTTGCTCCGCGCCGTCAACGCCCACCGC
TTCGCCTCTGCCTCAACATCGACATGTTCGCCCTGCGCTCCTCTCCCTCC
TCCCTGGTGTGCGACATCCGCGACGGCTGGGCCGCCACGTCCACCGCCGT
GCTCTCGGCCCCGCGCCCGCGGCGCGCCTCCGTCCGGCTCATCTACCCAC
ACTACGACTCGCCGCCGGCGGCGTTGGCCGACGACCGAGCTGCAACCGCC
GGCGGAGATGACGGCGGCAGCGTCGGCAGCGGCGGGAGGAGCGCCTTCTC
TCCGGGTGTCTCTGACTACGCGGGCGTGTTCGAGGCTGGCTTCGACCCCG
CCCAGGTGAGGGCTTCCATGTCTAAGGAGGTGGTTGAGGTTGGACAAGCG
GGGGCGCCTTATGCGGCGAATGCAGCGGAGGCTGCTGCTGCTCTGGTGGT
CGAGGAACGTCGAGCATTCGCGGCCGGCGGCGGCGGCGACGCGCGGGACA
GCAGGGAGTGGCGCGACGACGACGACGGCGACGAGGGCGGGGCGGGAATC
GGCCGCGGCCAGCACGCGGTGGCCCGCAGCAGCGCCGCAGCGCTGGCTGC
CGGAGGTGGTGTTGCTCGCGAGGAAGACGACCCCTTGTCCTGCTGCGAGG
AGGAAGAAGACTTTCTGTTCGACATGGAAGGGTTGAAGGAGACCACTTTT
TTTGAGGACCAGCAGGAGGACAACAATAATAACGACCGCCGTGACAGCAG
TGGCAGCAGCAGCATGCGTGCCACCGCCGCCGCGGCCGCCGCCGATTATT
ATGGGTACAGCAAGGGCGGGGGCTGGGGTGCGACTACGACAGCGGCGGCG
GCGGCGGCGCCTGCGGAGGTCAAAGGACGCGACACCGGCGGCGCCTCCCG
CCGCGGTATTGTCCCGCAGCAGCAGGAGGGAACAACGGCAAGAACCGCCG
CCGGCCGCGGTCTATCTCCTGCCGCTGCTGCTGGGGGGGGGGGGGCACGC
GAGGTGTCTTACGCCGGTTTCAAGGGCGCCGCGCTGCTGCGCACGCCACG
GGTGATCGCTCCCCGGGGGACGCGGTGCGTGACCGGGGGAATGTACAGGC
TGAGGCTCAGCACGTCGTGCTAAGATGAGTTAAATATCAATCGGCGGTGA
TGGTGATGCTTAAGGATTCTGCGAAGGCCGGGGGGGGGGCGGGGAGGTTA
TTGTGCGCCACAGCAGTGGGCATCTTGGACGGGGGTCTCTCTCTTTCTGT
CTCGTATGAGCAATATATATATGTGGTCTTTTGTCTGTGGGTCCAAAGCA
TTAGTAGTAGTCTGTCTTGTAGTCGTATGCCCTTTATGAAATAATTAACG
CAAAGCGCCTTTGGCTGGCCGGGTGTGTGTGTGTTTGTGTGGCAGCACTC
GTCTGTTGGGTGCGTCGTTTTTTTTGTTTCGGTGTTGGATGATGGTATGA
TATGCTCCATACGCTATCTCGCTATTACCGCCCCCTGCACCTTGCTCGCT
TTATCTCTCGTCGCTCGAGAGCCATGCATGCCCCCCCTGTCTATCTCCCC
TGCATGCGGCACGCCTTGCCCTTTGTCGTGTCTCGTCGTTATTCGCGCGT
GAGATATCATCTCGCGTTGACCCCTACCCCTCCCAGGGGGAGGGTGCTCT
TAAGGCGTTGTCTAGAGAGGTGATGGCGTTCTCACGTGACACACGGTTGC
GTGCGCCCTTATTGGCTATTTTTCTTTTATCAATATCCAAGAGCGTGTCG
TGCCATTGGCAGGAGCGGGGGGCGATTTTTGGGGTGTTTTTGTGTTCGCG
TGTGCGTAGTGGTTTATTTCTTTTCTTTCCTTTTTGTCTCTTTTTCTTTT
TGCCCTGTCTTTCGGCGCTCCTTCGCCCCCAGGCGCGTGTGCCGCTGTGC
GCTTTCTTGCTTGCACCTCTCGAGAATAGCCTAGTATTTATTCTTGGTGT
GCGTGCATCCCATCCCGTCCATTCCTGGCTGACTGCTAAATGTGGCCTCT
CCGTGCCATTTCATGCCCCAGCTGTATTTTTTTTCTCTTTTTTTTCTGAA
AACGGGAAATCGTAAGACGGGGAGGATGCCGGGCGAGTGCCGTGCGTAGA
TGGAGAGTGCGTCATGCGTGCGTATCGCTCACTACTGTAGAGCGGCCTGT
AGGGCGAACGACACACAACCGACCTTTGTTGGGGTTATTAGCGAGGGCGG
AGGTGTACTACTGTCTGACCCCCCTCCCGGCCGTTAGTTGCTTTGTCTTT
TGTGTACGGTCTTGTTCCCCCCTGACGACAACGGGAGGTTTGGAAAGGAG
TACGCCAATAATAATGGAGGGTTGTGTTCATGCTGTTTTTCCGTATTATT
TGTGCTTATAGTCAGGCACATCGTGGCAAAGCAGCGAGAGCGGCAAAATG
TGTACACTACTGCCGGTGCCCGACACTCGAAGATTACAGCAGTCGGTGGT
GTATGAGTACTACAAAAAAGAGGATGCGCCGACCTTCTGTTGGGGGTGGT
TGCTGTATTTTCTCGTCGTCGTTTGTCGTTGTTTTTTACGTTTTTGTTGT
CGTTTTGGTTTTTTTATGAGCAAGATGGAGATCGTGCGAGAGCACTTTTC
CACACACAGCTACAGACTTGGGCCAGGGTTCACGAGGAGTGCAGAGGGTA
GTAGCGGGGCCATGTCATGTATGTGGGCACGCAGAAAGTGTTGCGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1171:20862..23808+

>mRNA_E-siliculosus-1a_F_contig1171.1114.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1114.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1114.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2100bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:20862..23808+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCGCCCTGCGCTCCTCTCCCTCCTCCCTGGTGTGCGACATCCGCGA
CGGCTGGGCCGCCACGTCCACCGCCGTGCTCTCGGCCCCGCGCCCGCGGC
GCGCCTCCGTCCGGCTCATCTACCCACACTACGACTCGCCGCCGGCGGCG
TTGGCCGACGACCGAGCTGCAACCGCCGGCGGAGATGACGGCGGCAGCGT
CGGCAGCGGCGGGAGGAGCGCCTTCTCTCCGGGTGTCTCTGACTACGCGG
GCGTGTTCGAGGCTGGCTTCGACCCCGCCCAGGTGAGGGCTTCCATGTCT
AAGGAGGTGGTTGAGGTTGGACAAGCGGGGGCGCCTTATGCGGCGAATGC
AGCGGAGGCTGCTGCTGCTCTGGTGGTCGAGGAACGTCGAGCATTCGCGG
CCGGCGGCGGCGGCGACGCGCGGGACAGCAGGGAGTGGCGCGACGACGAC
GACGGCGACGAGGGCGGGGCGGGAATCGGCCGCGGCCAGCACGCGGTGGC
CCGCAGCAGCGCCGCAGCGCTGGCTGCCGGAGGTGGTGTTGCTCGCGAGG
AAGACGACCCCTTGTCCTGCTGCGAGGAGGAAGAAGACTTTCTGTTCGAC
ATGGAAGGGTTGAAGGAGACCACTTTTTTTGAGGACCAGCAGGAGGACAA
CAATAATAACGACCGCCGTGACAGCAGTGGCAGCAGCAGCATGCGTGCCA
CCGCCGCCGCGGCCGCCGCCGATTATTATGGGTACAGCAAGGGCGGGGGC
TGGGGTGCGACTACGACAGCGGCGGCGGCGGCGGCGCCTGCGGAGGTCAA
AGGACGCGACACCGGCGGCGCCTCCCGCCGCGGTATTGTCCCGCAGCAGC
AGGAGGGAACAACGGCAAGAACCGCCGCCGGCCGCGGTCTATCTCCTGCC
GCTGCTGCTGGGGGGGGGGGGGCACGCGAGGTGTCTTACGCCGGTTTCAA
GGGCGCCGCGCTGCTGCGCACGCCACGGGTGATCGCTCCCCGGGGGACGC
GGTGCGTGACCGGGGGAATGTACAGGCTGAGGCTCAGCACGTCGTGCTAA
ATGTTCGCCCTGCGCTCCTCTCCCTCCTCCCTGGTGTGCGACATCCGCGA
CGGCTGGGCCGCCACGTCCACCGCCGTGCTCTCGGCCCCGCGCCCGCGGC
GCGCCTCCGTCCGGCTCATCTACCCACACTACGACTCGCCGCCGGCGGCG
TTGGCCGACGACCGAGCTGCAACCGCCGGCGGAGATGACGGCGGCAGCGT
CGGCAGCGGCGGGAGGAGCGCCTTCTCTCCGGGTGTCTCTGACTACGCGG
GCGTGTTCGAGGCTGGCTTCGACCCCGCCCAGGTGAGGGCTTCCATGTCT
AAGGAGGTGGTTGAGGTTGGACAAGCGGGGGCGCCTTATGCGGCGAATGC
AGCGGAGGCTGCTGCTGCTCTGGTGGTCGAGGAACGTCGAGCATTCGCGG
CCGGCGGCGGCGGCGACGCGCGGGACAGCAGGGAGTGGCGCGACGACGAC
GACGGCGACGAGGGCGGGGCGGGAATCGGCCGCGGCCAGCACGCGGTGGC
CCGCAGCAGCGCCGCAGCGCTGGCTGCCGGAGGTGGTGTTGCTCGCGAGG
AAGACGACCCCTTGTCCTGCTGCGAGGAGGAAGAAGACTTTCTGTTCGAC
ATGGAAGGGTTGAAGGAGACCACTTTTTTTGAGGACCAGCAGGAGGACAA
CAATAATAACGACCGCCGTGACAGCAGTGGCAGCAGCAGCATGCGTGCCA
CCGCCGCCGCGGCCGCCGCCGATTATTATGGGTACAGCAAGGGCGGGGGC
TGGGGTGCGACTACGACAGCGGCGGCGGCGGCGGCGCCTGCGGAGGTCAA
AGGACGCGACACCGGCGGCGCCTCCCGCCGCGGTATTGTCCCGCAGCAGC
AGGAGGGAACAACGGCAAGAACCGCCGCCGGCCGCGGTCTATCTCCTGCC
GCTGCTGCTGGGGGGGGGGGGGCACGCGAGGTGTCTTACGCCGGTTTCAA
GGGCGCCGCGCTGCTGCGCACGCCACGGGTGATCGCTCCCCGGGGGACGC
GGTGCGTGACCGGGGGAATGTACAGGCTGAGGCTCAGCACGTCGTGCTAA
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