mRNA_E-siliculosus-1a_F_contig1171.1112.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1171.1112.1
Unique NamemRNA_E-siliculosus-1a_F_contig1171.1112.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1112.1 vs. uniprot
Match: D8LHI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI9_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 8.130e-9
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  129 DVGAVMGGVGSHSCKIGFAGEDFLRAYFT 215
            DVGAVMG VGS+SCK+GFAGEDF RAYFT
Sbjct:   36 DVGAVMGDVGSYSCKMGFAGEDFPRAYFT 64
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1112.1 vs. uniprot
Match: A0A6H5KHN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.180e-7
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 3 
Query:  123 TYDVGAVMGGVGSHSCKIGFAGEDFLRAYFTS 218
            TYDVGAV+G  GS+SCK+GFAGEDF RAY TS
Sbjct:   38 TYDVGAVVGDGGSYSCKMGFAGEDFPRAYLTS 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1171.1112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHI9_ECTSI8.130e-986.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHN4_9PHAE3.180e-778.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1171contigE-siliculosus-1a_F_contig1171:2435..4144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size219
Model size219
Exons2
Ec32 orthologEc-10_002100.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927692.6432862-CDS-E-siliculosus-1a_F_contig1171:2434..25271622927692.6432862-CDS-E-siliculosus-1a_F_contig1171:2434..2527Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 2435..2527 -
1696318640.1793973-CDS-E-siliculosus-1a_F_contig1171:2434..25271696318640.1793973-CDS-E-siliculosus-1a_F_contig1171:2434..2527Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 2435..2527 -
1622927692.6565428-CDS-E-siliculosus-1a_F_contig1171:4018..41441622927692.6565428-CDS-E-siliculosus-1a_F_contig1171:4018..4144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 4019..4144 -
1696318640.1913972-CDS-E-siliculosus-1a_F_contig1171:4018..41441696318640.1913972-CDS-E-siliculosus-1a_F_contig1171:4018..4144Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 4019..4144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1171.1112.1prot_E-siliculosus-1a_F_contig1171.1112.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1171 2435..4144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1171.1112.1

>prot_E-siliculosus-1a_F_contig1171.1112.1 ID=prot_E-siliculosus-1a_F_contig1171.1112.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
QAGSVPGSPEHKRRVAAGRCWLLCRRPSSPITLSWALVVVVHTMSEPSWG
VSDRTPARSASRARIFSGPTSRR
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mRNA from alignment at E-siliculosus-1a_F_contig1171:2435..4144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1171.1112.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1112.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:2435..4144- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGCTGGCTCCGTTCCAGGTTCACCAGAGCATAAGCGCCGCGTTGCTGC
TGGCAGGTGCTGGCTTCTTTGTCGCCGGCCATCTTCCCCAATCACACTCA
GCTGGGCGCTCGTGGTGGTAGTACATGTGAGTCAGCGTTAGAGTGCGGCA
TCCTGGGGAGGGTTAAAGTTGGAGGCGGCTGCTGCAGACGGACTGATTGA
TTTTTGTTTTTTCTTGACTCTTGTCCACGGCTGTCTTTTACGCTATATCC
CTCCGCCTTCTTGGTTTAGGTCCAACCTGGTCTTGTGCAAACAGAGCGCC
GAGTCGAACAAAGGAGCTCGAGAACCTTGTCATCGAACACATCTCCATTG
CTTGTCTTCCGTGCTGTTGAGCACGCAGTTTTGTTCTCGGTGTTCTACTG
CTGTAAGCGAGGGAGCCGATGATGTATCGGAGTATATATCCTGCGTGCCG
CCTTTCTCTGAGGTTGTTGAGAGACCACGGCGCGGTTGATGATGGTTGAC
GCCTTTGGGGTGTGCCTGCACTCGCGTTGATTTGCTCTATATGTGGCATG
TCTCCGAGAGAGTAATGGAGAGGCACTGGCGGATATTTACTTCACGCTTG
CTTGCAGAGGAAGTCAGGAGATGTTCGTTTGTCTTACAACAGCATGCCGG
TGGCGGGAGTCGAAGATACTGATGCGTGTTTGATGGTCGCAAGATCCTCC
TACACATATGTAGATTATGCTTACCGATCATGTGTGTTGCTTGGATAGGC
ATGCAGTGCCAGCCCGTGTCCAATTGCCCTCGCAAGAAAGCGACGGTCAG
ATTCGTGAAAAACAAGAAGTAGTCTAGACTACAGTATAATTTGAGTTCAG
CCGCCGGCACCACACACCTGTAGTCTAAAGTCTGCTGTACCTTGCGTTGG
ACTCGACGACATGATCAACAGCGCGGTTCTTGTGCATTACAAGTAGTCCA
TGGGCACCGGTCGTCATGAATCAAACAACGGCAGCTAAACGGTCTCTTCT
ATGCAGAATCATTGATCCGTACTCTAGAGCAGCCGCCTCCCACGCATATA
TCCACAATCTAGAGTGAATGTGACGAAGCGTGTTCGATTTTCAAAGCAAA
TCTCAGACGCGTCGAAAGCTGGTGATTCTGTCCCGCAGACCGTCGTTTGG
CCTCCGGCCTCCACCTCCTCTCCCCCGCACAAAGTCTAAAACATCAAGAG
CCCCCTCGTGTGTGGCCTTTGTCCTGCTGTGAGACCCCGGCCGGGTGCGT
CTGAAAAACCATACCGAGAGGTGAAAAAACTTACAGTACACGTCCAGACT
CAAATGGGATAGCATCACAAGACACATACACATGGTCGGTTGTTGTCCCG
CTATTTGACCAACGTCTGTTCATTGGTCAGCCGGTCGTAGCACGGTCAAT
GCTACGTATAGTGACACGAAATTGATGGGAGTTGTTTCCATGACTGCTGT
AGGATTGGGACCGGCGCTCCGTGCCGAAAAGGATGCGTGGCCAACGGTAG
CCATGCCTAAAAGGAACGCAACAATTGAGCCCCCCCCATGGCCTAACGAC
TACGGCATGCACGACATACTATGAGTACACCCCCTTCCCGCTCCCCCCGC
ACCCCGTTTCCAAGCAGACGATGTCGGAGCCGTCATGGGGGGTGTCGGAT
CGCACTCCTGCAAGATCGGCTTCGCGGGCGAGGATTTTCTCAGGGCCTAC
TTCACGTCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1171:2435..4144-

>mRNA_E-siliculosus-1a_F_contig1171.1112.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1112.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1112.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:2435..4144- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGCTGGCTCCGTTCCAGGTTCACCAGAGCATAAGCGCCGCGTTGCTGC
TGGCAGGTGCTGGCTTCTTTGTCGCCGGCCATCTTCCCCAATCACACTCA
GCTGGGCGCTCGTGGTGGTAGTACATCAAGCTGGCTCCGTTCCAGGTTCA
CCAGAGCATAAGCGCCGCGTTGCTGCTGGCAGGTGCTGGCTTCTTTGTCG
CCGGCCATCTTCCCCAATCACACTCAGCTGGGCGCTCGTGGTGGTAGTAC
ATACGATGTCGGAGCCGTCATGGGGGGTGTCGGATCGCACTCCTGCAAGA
TCGGCTTCGCGGGCGAGGATTTTCTCAGGGCCTACTTCACGTCGGACGAT
GTCGGAGCCGTCATGGGGGGTGTCGGATCGCACTCCTGCAAGATCGGCTT
CGCGGGCGAGGATTTTCTCAGGGCCTACTTCACGTCGG
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