mRNA_E-siliculosus-1a_F_contig117.1106.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig117.1106.1
Unique NamemRNA_E-siliculosus-1a_F_contig117.1106.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig117.1106.1 vs. uniprot
Match: D8LPU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 1.270e-108
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 1 
Query:    7 MAPVPEWSELETAVQALMGMEGGEERECEDLWDATESRRLVQMESVLEEQRRLMRRVMRHNGNLRALWRKYAASPLEDRGSQGAEGVVTLGETRVLTEFQISNDLLRKRVQDLEEQLRAKSALEEGSFPAAPATAPLFHGVPGQIGNGTSEPPAAGAYGGSGAGHAAHVSVGRGGAPGPTFQGAG 561
            MAPVPEWSELETAVQALMGMEGGEERECEDLWDATESRRLVQMESVLEEQRRLMRRVMRHNGNLRALWRKYAASPLEDRGSQGAEGVVTLGETRVLTEFQISNDLLRKRVQDLEEQLRAKSALEEGSFPAAPATAPLFHGVPGQIGNGTSEPPAAGAYGGSGAGHAAHV VGRGGAPGPTFQGAG
Sbjct: 1074 MAPVPEWSELETAVQALMGMEGGEERECEDLWDATESRRLVQMESVLEEQRRLMRRVMRHNGNLRALWRKYAASPLEDRGSQGAEGVVTLGETRVLTEFQISNDLLRKRVQDLEEQLRAKSALEEGSFPAAPATAPLFHGVPGQIGNGTSEPPAAGAYGGSGAGHAAHVRVGRGGAPGPTFQGAG 1258
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BLAST of mRNA_E-siliculosus-1a_F_contig117.1106.1 vs. uniprot
Match: A0A6H5KC98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 1.240e-105
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 1 
Query:    1 DGMAPVPEWSELETAVQALMGMEGGEERECEDLWDATESRRLVQMESVLEEQRRLMRRVMRHNGNLRALWRKYAASPLEDRGSQGAEGVVTLGETRVLTEFQISNDLLRKRVQDLEEQLRAKSALEEGSFPAAPATAPLFHGVPGQIGNGTSEPPAAGAYGGSGAGHAAHVSVGRGGAPGPTFQGAG 561
            DGMA VPEWSELETAVQAL+GMEGGEERECEDLWDATESRRLVQMESVLEEQRRLMRRVMRHNGNLRALWRKYAASPLEDRGSQGAEGVVTLGETRVLTEFQISNDLLRKRVQDLEEQLRAKSAL+EGSFPAAPATAP FHGVPGQIGNGTSEPPAAGAYGGSGAGHAAHVSVGRG APGPTFQGAG
Sbjct: 1151 DGMATVPEWSELETAVQALVGMEGGEERECEDLWDATESRRLVQMESVLEEQRRLMRRVMRHNGNLRALWRKYAASPLEDRGSQGAEGVVTLGETRVLTEFQISNDLLRKRVQDLEEQLRAKSALQEGSFPAAPATAPHFHGVPGQIGNGTSEPPAAGAYGGSGAGHAAHVSVGRG-APGPTFQGAG 1336
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig117.1106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPU7_ECTSI1.270e-10899.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC98_9PHAE1.240e-10597.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig117contigE-siliculosus-1a_F_contig117:79862..81618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size711
Model size718
Exons4
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs294SK@1,2RBQ1@2759
EggNOG free text desc.PHD-finger
Seed eggNOG ortholog2880.D8LPU7
Seed ortholog evalue1.9e-95
Seed ortholog score355.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig117.1106.1prot_E-siliculosus-1a_F_contig117.1106.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig117 79862..81612 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927691.4820552-CDS-E-siliculosus-1a_F_contig117:79861..802461622927691.4820552-CDS-E-siliculosus-1a_F_contig117:79861..80246Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig117 79862..80246 -
1696318639.6842008-CDS-E-siliculosus-1a_F_contig117:79861..802461696318639.6842008-CDS-E-siliculosus-1a_F_contig117:79861..80246Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig117 79862..80246 -
1622927691.4924455-CDS-E-siliculosus-1a_F_contig117:80473..805631622927691.4924455-CDS-E-siliculosus-1a_F_contig117:80473..80563Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig117 80474..80563 -
1696318639.6988528-CDS-E-siliculosus-1a_F_contig117:80473..805631696318639.6988528-CDS-E-siliculosus-1a_F_contig117:80473..80563Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig117 80474..80563 -
1622927691.5032735-CDS-E-siliculosus-1a_F_contig117:80965..810851622927691.5032735-CDS-E-siliculosus-1a_F_contig117:80965..81085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig117 80966..81085 -
1696318639.7079341-CDS-E-siliculosus-1a_F_contig117:80965..810851696318639.7079341-CDS-E-siliculosus-1a_F_contig117:80965..81085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig117 80966..81085 -
1622927691.514438-CDS-E-siliculosus-1a_F_contig117:81496..816121622927691.514438-CDS-E-siliculosus-1a_F_contig117:81496..81612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig117 81497..81612 -
1696318639.7162015-CDS-E-siliculosus-1a_F_contig117:81496..816121696318639.7162015-CDS-E-siliculosus-1a_F_contig117:81496..81612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig117 81497..81612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927691.5255778-UTR-E-siliculosus-1a_F_contig117:81612..816181622927691.5255778-UTR-E-siliculosus-1a_F_contig117:81612..81618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig117 81613..81618 -
1696318639.724824-UTR-E-siliculosus-1a_F_contig117:81612..816181696318639.724824-UTR-E-siliculosus-1a_F_contig117:81612..81618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig117 81613..81618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig117.1106.1

>prot_E-siliculosus-1a_F_contig117.1106.1 ID=prot_E-siliculosus-1a_F_contig117.1106.1|Name=mRNA_E-siliculosus-1a_F_contig117.1106.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=237bp
MAPVPEWSELETAVQALMGMEGGEERECEDLWDATESRRLVQMESVLEEQ
RRLMRRVMRHNGNLRALWRKYAASPLEDRGSQGAEGVVTLGETRVLTEFQ
ISNDLLRKRVQDLEEQLRAKSALEEGSFPAAPATAPLFHGVPGQIGNGTS
EPPAAGAYGGSGAGHAAHVSVGRGGAPGPTFQGAGGGGGGSQNLAVRRSS
SAQDIKENGGGFKATAAAAAAAAAAPPPSRVVGGAAA
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mRNA from alignment at E-siliculosus-1a_F_contig117:79862..81618-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig117.1106.1 ID=mRNA_E-siliculosus-1a_F_contig117.1106.1|Name=mRNA_E-siliculosus-1a_F_contig117.1106.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1757bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig117:79862..81618- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATGGGATGGCGCCTGTGCCGGAGTGGTCGGAGCTTGAGACGGCGGTGCA
GGCGTTGATGGGGATGGAGGGCGGGGAGGAGAGGGAGTGCGAGGACTTGT
GGGATGCCACGGAGTCGAGACGGTGAGTACGAGAGAGAGAGAGATATTAT
GTGGAAGGGCAGAGGCAAAGAGAGGGAGAGGGGGGGAGAGAGAGGAAAAA
CACATAAAAAAAGGAAAATTAGATGTCTAGAAGAGAACAATACAAGAGGC
TGAGCTGATAGGGAGGAAAGTTTCTGGGGTTAGGAGCGGGAGCGCAAAGC
AAAAAGATTTTGTTGTTACATAAATGCTGGGGGCTTTTTCTTGTACAATT
GTACCCCTGACAGTTCGCACCCCTACATCATCATCAAGAATGCAGGACTG
CAGGCCCGTACGTGTATGGTGTTAGGTTTCTCGCCCCCAGAGTCGTGTTG
TTTGTTTTTTATGCGGCAAAGTACGGGCAAGAAGAGTCTTATCTCACACC
CTGGCTGCTGCTGTCCTCTGTTTGTTGGCTCAGGCTGGTACAAATGGAGT
CTGTACTCGAAGAGCAACGACGATTGATGCGCCGGGTGATGAGGCACAAC
GGCAACCTTCGTGCGCTGTGGAGGAAGTACGCAGCATCCCCCCTGGAGGA
CCGGTACGACTATCATTAGTTTGTCGGCGGTGGTGTTGCTGTTGTCGTTT
CTTCATCCGTGAGGAAGAGAAATTGACAAACGATCCCGTGTACATGGTAT
GTACTGCGGAGCCCTGAGTTTGGGTAGACGTTCTACAGTATTCAGATTAC
TACTACCGCATCTCCCAACCGTTGTATTTGTTTTCCTTGCGTTCCGAAGA
ACCCGACTATACATCAACCGTCGCTCATGCTTCCACCTACGCATTGATGC
AGTCATCCGTCTGTTGTTTTGTCTGCTATGCATTTACATGTTGCCGCATA
CATAGGCCTCGTGTCTTCCTAAATTGTACCCTACAACGTCGCCCCCAACC
AAATCAAACCTTTCTTTTTTTCTGTCGATTGTCGCTCTCTCTCGTTAACC
CACAGGGGAAGCCAGGGGGCCGAGGGAGTGGTTACCCTGGGAGAAACACG
CGTCCTGACAGAGTTCCAGATATCCAACGACCTTCTCAGAAAAAGGTGCA
CAAAAATGGTGTTGATGGGTTTTTTGGCCTCATGCGTTCCGTCCGCATGA
CGGTGGTGTCAGTGCCGTCCAGTGCGCATACAATGCGCTGGTTTGTGCAT
TTATCATGCCGTTTGTTCGGCCCGCCATGTCTTAGCGATGAAGCTCGGCG
TGCGTTACTCTTTCAACGCGCGTCCGTTGTGTTGATTTGTCTTTTTTCTG
GCGGCGTGTGTGTATGACCCAGGGTGCAAGATCTCGAGGAACAACTCCGG
GCCAAGTCGGCGCTAGAGGAGGGCTCGTTCCCCGCAGCGCCCGCCACCGC
TCCACTTTTCCACGGCGTCCCGGGCCAAATCGGCAACGGCACGTCCGAAC
CTCCTGCTGCTGGGGCGTATGGTGGAAGCGGCGCCGGTCACGCCGCACAC
GTTAGCGTTGGTAGAGGAGGTGCTCCCGGTCCCACCTTTCAGGGGGCAGG
CGGCGGCGGGGGCGGCAGCCAGAACTTGGCCGTCAGGAGAAGCAGTAGCG
CGCAAGATATCAAGGAGAACGGTGGTGGTTTCAAGGCCACCGCAGCAGCA
GCAGCAGCAGCAGCAGCCGCGCCTCCTCCTTCGCGTGTGGTGGGCGGGGC
GGCGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig117:79862..81618-

>mRNA_E-siliculosus-1a_F_contig117.1106.1 ID=mRNA_E-siliculosus-1a_F_contig117.1106.1|Name=mRNA_E-siliculosus-1a_F_contig117.1106.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig117:79862..81618- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGCCTGTGCCGGAGTGGTCGGAGCTTGAGACGGCGGTGCAGGCGTT
GATGGGGATGGAGGGCGGGGAGGAGAGGGAGTGCGAGGACTTGTGGGATG
CCACGGAGTCGAGACGATGGCGCCTGTGCCGGAGTGGTCGGAGCTTGAGA
CGGCGGTGCAGGCGTTGATGGGGATGGAGGGCGGGGAGGAGAGGGAGTGC
GAGGACTTGTGGGATGCCACGGAGTCGAGACGGCTGGTACAAATGGAGTC
TGTACTCGAAGAGCAACGACGATTGATGCGCCGGGTGATGAGGCACAACG
GCAACCTTCGTGCGCTGTGGAGGAAGTACGCAGCATCCCCCCTGGAGGAC
CGGCTGGTACAAATGGAGTCTGTACTCGAAGAGCAACGACGATTGATGCG
CCGGGTGATGAGGCACAACGGCAACCTTCGTGCGCTGTGGAGGAAGTACG
CAGCATCCCCCCTGGAGGACCGGGGAAGCCAGGGGGCCGAGGGAGTGGTT
ACCCTGGGAGAAACACGCGTCCTGACAGAGTTCCAGATATCCAACGACCT
TCTCAGAAAAAGGGGAAGCCAGGGGGCCGAGGGAGTGGTTACCCTGGGAG
AAACACGCGTCCTGACAGAGTTCCAGATATCCAACGACCTTCTCAGAAAA
AGGGTGCAAGATCTCGAGGAACAACTCCGGGCCAAGTCGGCGCTAGAGGA
GGGCTCGTTCCCCGCAGCGCCCGCCACCGCTCCACTTTTCCACGGCGTCC
CGGGCCAAATCGGCAACGGCACGTCCGAACCTCCTGCTGCTGGGGCGTAT
GGTGGAAGCGGCGCCGGTCACGCCGCACACGTTAGCGTTGGTAGAGGAGG
TGCTCCCGGTCCCACCTTTCAGGGGGCAGGCGGCGGCGGGGGCGGCAGCC
AGAACTTGGCCGTCAGGAGAAGCAGTAGCGCGCAAGATATCAAGGAGAAC
GGTGGTGGTTTCAAGGCCACCGCAGCAGCAGCAGCAGCAGCAGCAGCCGC
GCCTCCTCCTTCGCGTGTGGTGGGCGGGGCGGCGGCGGGTGCAAGATCTC
GAGGAACAACTCCGGGCCAAGTCGGCGCTAGAGGAGGGCTCGTTCCCCGC
AGCGCCCGCCACCGCTCCACTTTTCCACGGCGTCCCGGGCCAAATCGGCA
ACGGCACGTCCGAACCTCCTGCTGCTGGGGCGTATGGTGGAAGCGGCGCC
GGTCACGCCGCACACGTTAGCGTTGGTAGAGGAGGTGCTCCCGGTCCCAC
CTTTCAGGGGGCAGGCGGCGGCGGGGGCGGCAGCCAGAACTTGGCCGTCA
GGAGAAGCAGTAGCGCGCAAGATATCAAGGAGAACGGTGGTGGTTTCAAG
GCCACCGCAGCAGCAGCAGCAGCAGCAGCAGCCGCGCCTCCTCCTTCGCG
TGTGGTGGGCGGGGCGGCGGCG
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