mRNA_E-siliculosus-1a_F_contig1167.1089.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1167.1089.1
Unique NamemRNA_E-siliculosus-1a_F_contig1167.1089.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Match: D7G209_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G209_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.020e-55
Identity = 112/124 (90.32%), Postives = 113/124 (91.13%), Query Frame = 3 
Query:  141 MNLLASSGQDPMPDGDSTEXXXXXXXXGAGSREVETCIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAPTAXXXXXXXXXXXLPETVGRDDDVDGGSEQSDSEGSAC 512
            MNLLASSG+DPMPDGDST         GAGSREVETCIECEDQ AELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAPTAXXXXXXXXXXXLPETVG DDDVDGGSEQSDSEGSAC
Sbjct:    1 MNLLASSGEDPMPDGDSTAMEEEEE--GAGSREVETCIECEDQHAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAPTAXXXXXXXXXXXLPETVGHDDDVDGGSEQSDSEGSAC 122
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Match: A0A6H5LC65_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC65_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.100e-53
Identity = 98/113 (86.73%), Postives = 101/113 (89.38%), Query Frame = 3 
Query:   66 MEQPKFAESLRRKVSDLRRENAGKVMNLLASSGQDPMPDGDSTEXXXXXXXXGAGSREVETCIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAPTA 404
            MEQ KFA SLRRKVSDLR+ NAG VMNLLASSG+DPM DGDST     XXX GAGSREVETCIECEDQ AELVC+SCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAPTA
Sbjct:    1 MEQNKFAASLRRKVSDLRKANAGNVMNLLASSGEDPMLDGDSTAMEEEXXXEGAGSREVETCIECEDQHAELVCVSCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAPTA 113
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Match: A0A7S3UUV7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUV7_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 2.660e-15
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 3 
Query:  249 CIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAP 398
            C ECEDQ AE+ C  C+EPFCRPCW SLHR+G RAEH    +LG +M AP
Sbjct:   19 CAECEDQHAEVQCRGCDEPFCRPCWQSLHRRGARAEHHAAPLLGRLMAAP 68
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Match: F2QZE4_KOMPC (B box-type domain-containing protein n=3 Tax=Komagataella TaxID=460517 RepID=F2QZE4_KOMPC)

HSP 1 Score: 59.3 bits (142), Expect = 5.300e-7
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:  249 CIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAIL 377
            C+EC D   E+ C+SC E FC+PC+G +HR+GKR  H    +L
Sbjct:   43 CVECSDMPTEIFCVSCSENFCKPCFGMIHRKGKRKNHKREEVL 85
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Match: A0A8H6YBJ3_9AGAR (B box-type domain-containing protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6YBJ3_9AGAR)

HSP 1 Score: 58.2 bits (139), Expect = 1.310e-6
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 3 
Query:  222 GAGSREVETCIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAPT 401
            GA S E  TCIECEDQ AE+ C +C + FC  C+ S HR+G R  HV + +       PT
Sbjct:   37 GAKSVEEGTCIECEDQPAEVRCENCADVFCEVCYASQHRKGSRKLHVVKPLNNREKTKPT 96
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Match: A0A1X0RH07_RHIZD (B box-type domain-containing protein n=5 Tax=Rhizopus TaxID=4842 RepID=A0A1X0RH07_RHIZD)

HSP 1 Score: 58.2 bits (139), Expect = 1.310e-6
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:  249 CIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTR 368
            C+EC+DQ+A ++C SC E FC  C+G +HR GKRA H  R
Sbjct:   45 CVECKDQEAVVLCTSCNEAFCEVCYGMIHRTGKRATHKAR 84
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Match: A0A8H6Y5T4_9AGAR (B box-type domain-containing protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6Y5T4_9AGAR)

HSP 1 Score: 57.4 bits (137), Expect = 2.420e-6
Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 3 
Query:  246 TCIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAILGEVMPAPTAXXXXXXXXXXXLPETVGRDDDVD 473
            TCIECEDQ AE++C +C + FC  C+ S HR+G R  HV + +     P PTA            P+ +  DDD D
Sbjct:   48 TCIECEDQPAEVLCETCADIFCEVCYASQHRKGSRKLHVVKPLR---KPKPTAEPAAAQPAKD--PDAMDADDDSD 118
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Match: A0A1E3QNG4_9ASCO (Uncharacterized protein n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QNG4_9ASCO)

HSP 1 Score: 55.8 bits (133), Expect = 8.150e-6
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  249 CIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVTRAI 374
            C+EC D  +E+VC+ C+E +C+ CW  +HR GKR  H T+ +
Sbjct:   40 CVECTDMPSEVVCVPCDENYCKVCWEVIHRSGKRRAHKTKKL 81
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G209_ECTSI1.020e-5590.32B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LC65_9PHAE1.100e-5386.73B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S3UUV7_HETAK2.660e-1564.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F2QZE4_KOMPC5.300e-748.84B box-type domain-containing protein n=3 Tax=Komag... [more]
A0A8H6YBJ3_9AGAR1.310e-646.67B box-type domain-containing protein n=1 Tax=Mycen... [more]
A0A1X0RH07_RHIZD1.310e-655.00B box-type domain-containing protein n=5 Tax=Rhizo... [more]
A0A8H6Y5T4_9AGAR2.420e-640.79B box-type domain-containing protein n=1 Tax=Mycen... [more]
A0A1E3QNG4_9ASCO8.150e-645.24Uncharacterized protein n=1 Tax=Babjeviella inosit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1167contigE-siliculosus-1a_F_contig1167:32756..35100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size501
Model size568
Exons4
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelOpisthokonta
COG Functional cat.S
EggNOG OGs28J77@1,2QRJJ@2759,38CC6@33154
EggNOG free text desc.Protein of unknown function (DUF2009)
Seed eggNOG ortholog946362.XP_004995229.1
Seed ortholog evalue8e-08
Seed ortholog score63.9
Taxonomic scopeOpisthokonta
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1167.1089.1prot_E-siliculosus-1a_F_contig1167.1089.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1167 32821..35100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927688.2020102-UTR-E-siliculosus-1a_F_contig1167:32755..328201622927688.2020102-UTR-E-siliculosus-1a_F_contig1167:32755..32820Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1167 32756..32820 +
1696318638.2214744-UTR-E-siliculosus-1a_F_contig1167:32755..328201696318638.2214744-UTR-E-siliculosus-1a_F_contig1167:32755..32820Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1167 32756..32820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927688.2401922-CDS-E-siliculosus-1a_F_contig1167:32820..328981622927688.2401922-CDS-E-siliculosus-1a_F_contig1167:32820..32898Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 32821..32898 +
1696318638.232566-CDS-E-siliculosus-1a_F_contig1167:32820..328981696318638.232566-CDS-E-siliculosus-1a_F_contig1167:32820..32898Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 32821..32898 +
1622927688.2549236-CDS-E-siliculosus-1a_F_contig1167:33997..340481622927688.2549236-CDS-E-siliculosus-1a_F_contig1167:33997..34048Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 33998..34048 +
1696318638.2400215-CDS-E-siliculosus-1a_F_contig1167:33997..340481696318638.2400215-CDS-E-siliculosus-1a_F_contig1167:33997..34048Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 33998..34048 +
1622927688.2686088-CDS-E-siliculosus-1a_F_contig1167:34063..342061622927688.2686088-CDS-E-siliculosus-1a_F_contig1167:34063..34206Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 34064..34206 +
1696318638.2475622-CDS-E-siliculosus-1a_F_contig1167:34063..342061696318638.2475622-CDS-E-siliculosus-1a_F_contig1167:34063..34206Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 34064..34206 +
1622927688.2799242-CDS-E-siliculosus-1a_F_contig1167:34871..351001622927688.2799242-CDS-E-siliculosus-1a_F_contig1167:34871..35100Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 34872..35100 +
1696318638.2553396-CDS-E-siliculosus-1a_F_contig1167:34871..351001696318638.2553396-CDS-E-siliculosus-1a_F_contig1167:34871..35100Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 34872..35100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1167.1089.1

>prot_E-siliculosus-1a_F_contig1167.1089.1 ID=prot_E-siliculosus-1a_F_contig1167.1089.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1089.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=167bp
MEQPKFAESLRRKVSDLRRENAGKVMNLLASSGQDPMPDGDSTEEEEEEE
EEGAGSREVETCIECEDQQAELVCLSCEEPFCRPCWGSLHRQGKRAEHVT
RAILGEVMPAPTAPTSSTEPPTPPLPETVGRDDDVDGGSEQSDSEGSACD
GDGDRDDGHGGGDAIES
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mRNA from alignment at E-siliculosus-1a_F_contig1167:32756..35100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1167.1089.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1089.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1089.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2345bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:32756..35100+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCGCTTGTCGTTGCCCTGTCGTTGTTGCCTCCTTCTGTGACGGAGAGTG
TGGGTGCCCTTGGCTATGGAACAGCCCAAATTTGCTGAATCATTGCGACG
AAAGGTGTCCGATTTGAGGAGGGAGAACGCAGGCAAAGTCATGGTGAGAA
TCGATACGAAGCTCCGGGCGTCTCTTCTGCTGTACGTGTGCTATGTCCGG
TTTGTGTCCGGAACAAATGCGGCAGCAGCAGGCTTGCCTTTGGCCTGACC
GGCGTACAGACGAAGCTCCGTGGTATTGGCACGTCCCGTTCAAGCGTAAC
CCTCCCTATCGTGGAGTGCACAGGTCTCATCAACATAGGCTATTCAGATA
TTTCCTCTTGCTGCACGTGGTGGGTGTGCTGTGTGATGCACGTTCAATAG
CCGTAGCTGTGCGAGGTGAGAGCCTTGTTTGTACGTGCAGCAGTACCGCG
TCTCTCCTTTGCCGACAAATGCGTACACCTTTGCCAACCACACTTGCAAC
ATGTCATATACCTGCTTTCCACATGGTACGACGGTCTTGCGTAGTTCAAT
ACCCTCTTCTTCCCCCCCCGCTCGATTGGCTCGAAGGAGGGTCGATGTCG
GCGGTAGACTATACCGATTTTACCCCCTCTCTGCCTCAAGTCGTCGGCCC
TGCGCCCTATATCACAGCATTGAGGTTCTACAGCAGTACTCGTGGCCGCT
ACACAGAAAGCTACATAACGCACTGCCCCACCGCATTTGTCCCGTTGATA
GTAGTGTCGACCTGGAATAAAAAAAAATCCACAGCAGTACCCCTATTCAT
ATCCCGTAGGCTACGCACCCATGTGGTGGCTGTGTGGTTCCAGCACATTT
ATGTCGAACACCGGTGAGCCACAACTCATCCGTGCAGGAAGTGTTGACAT
CAACATTTTGTGGCACACGCGGTCGGTCTTGATACCGCTGCAAGCACGTG
ATGAAGAGGTCATGTCATGCGAGTGGCGAGCTCTCGTTGGTCTGACTGAA
CAATCGTTGAAGACCCGATGGACATTCAGCCTACAACGCGGCATACGTGA
AGACTGCCACAGTTTGCCGCGGCATGTCTAATAGCTGACTAATGGAGTTA
TTTGGCGTTTTTGCTTGTCTAGTTCCCTATGCATTCTGAACGAAGAACAA
GCAATAGTCTGGCTCCATCCACCGCCCCCCACACGCTCCCCTGATCGTTT
GCATTGTTCCCGGCTGCCGACGAACGTCGTCGTGATGCCCAGAACCTCTT
AGCCTCTTCAGGGCAAGACCCAATGCCGGACGGCGATAGCACCGCGATGG
AAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGAGCAGGGTCCCGA
GAGGTGGAGACTTGCATCGAGTGCGAGGACCAGCAAGCCGAGCTCGTGTG
TCTGTCCTGCGAGGAGCCGTTTTGTCGACCTTGCTGGGGCTCCCTGCACC
GGTGAGAGCCAGTAAACCAGCATGCATCGCCGGGGTCCCCCCCGCAAACG
ATCGTCTTTGCTTGTTGCCCGCTGCCGCCAACAACAAGGGAAGGCACCAA
CACCGAGGTTGAGGTTAGCGGCCTTTGGAGGGTGCAAAGGGATCGAGTGT
CGCCGGTGGAGCGTGTCGCGTTTTTGAAGCTATTCCTTCTTGCCGACAAT
GCCTGGCGCTCGTGCTGTAGCCAACGATCGGAGAGCTTGAGTGTCGTGCT
TGAGGCGTGGGGTTTCTCTATTTGTGCACACCCTACACACCACCGCGCTC
TATCGAACACGAAATGATAGAAGACGGATCTAGACAACCGCAAGAATACT
CCATTTGATGCAGCATTAATCCAAACCATGACACCGAGGTACATATCCAT
CTATCCCAGCCTGTTGTGTGTGTCGCCAGAATCTTCGCCAAGTGTTGGTG
GAAGACAAGGGCGTACGCTCAACCCATTCCCAGACGCTTCGTCCTGCCAC
CCCATCGCACGCACAATATCTCAACCTGTGTCTGCCGTCAAGCCAAGTGA
TGGTTGATTGTACTGCTGTCGGTATGCACCACGGAGTTGTTGTTGCACAC
CCACGAAGTCTCCTTATCCTCCTCTCGATCTCCCACTTTTTTTTCCTTTT
TTTGTCCTATGTGCAGCCAAGGCAAGCGCGCGGAACACGTGACCCGGGCC
ATCCTCGGCGAGGTGATGCCCGCACCGACGGCCCCCACTTCATCCACAGA
GCCCCCCACCCCCCCCCTGCCCGAAACGGTCGGGCGCGACGACGATGTAG
ACGGCGGCAGCGAGCAGTCCGACAGCGAAGGGAGCGCGTGTGACGGTGAT
GGGGATCGCGATGACGGGCATGGCGGGGGCGACGCAATCGAGAGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1167:32756..35100+

>mRNA_E-siliculosus-1a_F_contig1167.1089.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1089.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1089.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:32756..35100+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAACAGCCCAAATTTGCTGAATCATTGCGACGAAAGGTGTCCGATTT
GAGGAGGGAGAACGCAGGCAAAGTCATGATGGAACAGCCCAAATTTGCTG
AATCATTGCGACGAAAGGTGTCCGATTTGAGGAGGGAGAACGCAGGCAAA
GTCATGAACCTCTTAGCCTCTTCAGGGCAAGACCCAATGCCGGACGGCGA
TAGCACCAACCTCTTAGCCTCTTCAGGGCAAGACCCAATGCCGGACGGCG
ATAGCACCGAGGAGGAGGAGGAAGAGGAGGAGGAGGGAGCAGGGTCCCGA
GAGGTGGAGACTTGCATCGAGTGCGAGGACCAGCAAGCCGAGCTCGTGTG
TCTGTCCTGCGAGGAGCCGTTTTGTCGACCTTGCTGGGGCTCCCTGCACC
GGAGGAGGAGGAGGAAGAGGAGGAGGAGGGAGCAGGGTCCCGAGAGGTGG
AGACTTGCATCGAGTGCGAGGACCAGCAAGCCGAGCTCGTGTGTCTGTCC
TGCGAGGAGCCGTTTTGTCGACCTTGCTGGGGCTCCCTGCACCGCCAAGG
CAAGCGCGCGGAACACGTGACCCGGGCCATCCTCGGCGAGGTGATGCCCG
CACCGACGGCCCCCACTTCATCCACAGAGCCCCCCACCCCCCCCCTGCCC
GAAACGGTCGGGCGCGACGACGATGTAGACGGCGGCAGCGAGCAGTCCGA
CAGCGAAGGGAGCGCGTGTGACGGTGATGGGGATCGCGATGACGGGCATG
GCGGGGGCGACGCAATCGAGAGTCCAAGGCAAGCGCGCGGAACACGTGAC
CCGGGCCATCCTCGGCGAGGTGATGCCCGCACCGACGGCCCCCACTTCAT
CCACAGAGCCCCCCACCCCCCCCCTGCCCGAAACGGTCGGGCGCGACGAC
GATGTAGACGGCGGCAGCGAGCAGTCCGACAGCGAAGGGAGCGCGTGTGA
CGGTGATGGGGATCGCGATGACGGGCATGGCGGGGGCGACGCAATCGAGA
GT
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