mRNA_E-siliculosus-1a_F_contig1167.1087.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1167.1087.1
Unique NamemRNA_E-siliculosus-1a_F_contig1167.1087.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1167contigE-siliculosus-1a_F_contig1167:22916..23896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size447
Model size449
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927685.1302304-CDS-E-siliculosus-1a_F_contig1167:22916..232571622927685.1302304-CDS-E-siliculosus-1a_F_contig1167:22916..23257Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 22917..23257 -
1696318637.7813287-CDS-E-siliculosus-1a_F_contig1167:22916..232571696318637.7813287-CDS-E-siliculosus-1a_F_contig1167:22916..23257Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 22917..23257 -
1622927685.1454663-CDS-E-siliculosus-1a_F_contig1167:23790..238961622927685.1454663-CDS-E-siliculosus-1a_F_contig1167:23790..23896Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 23791..23896 -
1696318637.7940178-CDS-E-siliculosus-1a_F_contig1167:23790..238961696318637.7940178-CDS-E-siliculosus-1a_F_contig1167:23790..23896Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 23791..23896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1167.1087.1prot_E-siliculosus-1a_F_contig1167.1087.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1167 22917..23896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1167.1087.1

>prot_E-siliculosus-1a_F_contig1167.1087.1 ID=prot_E-siliculosus-1a_F_contig1167.1087.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
AGTTTPPAASHSVRSLSLPFASEGGYLCSAKMENSAMNTRPRTRGAVARE
AAAATEAAAPRTRSKAARAAAAAATAAASAANLSRGKIHRSPLQRTTSSR
SSSSSSSRGAERARRAARQRGASARQPAAATRSRFSTAAPNTSSRQSRS
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mRNA from alignment at E-siliculosus-1a_F_contig1167:22916..23896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1167.1087.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1087.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=981bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:22916..23896- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGCACCACCACTCCGCCTGCTGCATCGCACTCTGTACGAAGTCTAAG
CCTCCCCTTCGCCTCCGAGGGGGGCTACCTCTGCAGCGCGAAGATGGAAA
ACAGCGGTAAGATTGTGCAACAGCAGTTTGTCTACGTAGAAAAAACAAGG
TTGTCGATCCTCTCAGCAGACACATATTTTTTCCTGCATGTTCTCCGTTT
CGGGCATCGCAGATACATACACGAGGTGGGGTAGTCTATGCAGGCCAGGC
ATGCATGCGTCTGGAGCGCACACATCTTCGTGCAGGAAAATGAATTGCTT
ACAGTGGCTGACCCGTCTTCCACAAGGCATCATGACGCGATGAGTAACGC
AGTCGAAACAATTTTGTTTCACTGGGCAGCTCTCCCGACTTCGGCCGACT
GGTCACAATCGCTCTGGCGACTAAAGTTGAGACGTTGAGACTCAAACATT
GACTAATTTGGAGCTGTCGCCTACTCTGTAGTGAGGAAGTCTTCGTACTT
GTTGTAAAATCAGCATTTAGCGGCATCTGCCTTCACTGAACGCCCACAAA
CCAGCCCAGCAATTGACCTCCGACCCCTCCTCCCTTCCCCACACGCCCTT
GCAACACATACGAACAACCGGGGCGGTTTGGAGTTGCAGCTATGAATACG
AGACCGAGAACTCGTGGGGCCGTGGCGCGGGAAGCGGCAGCGGCAACGGA
GGCAGCAGCTCCGAGGACTCGGAGCAAGGCGGCGCGGGCGGCAGCGGCGG
CGGCGACGGCGGCAGCATCAGCAGCTAACCTCTCGCGGGGAAAGATCCAC
CGTTCGCCATTACAACGAACAACAAGTTCGCGCAGCAGCAGCAGCAGCAG
CAGCAGGGGCGCGGAGCGGGCAAGAAGAGCGGCACGACAACGGGGGGCTT
CAGCGAGGCAACCAGCAGCAGCAACGCGTTCTCGGTTCTCCACCGCCGCT
CCCAATACAAGCTCTCGTCAGAGCCGATCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1167:22916..23896-

>mRNA_E-siliculosus-1a_F_contig1167.1087.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1087.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1087.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:22916..23896- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGCACCACCACTCCGCCTGCTGCATCGCACTCTGTACGAAGTCTAAG
CCTCCCCTTCGCCTCCGAGGGGGGCTACCTCTGCAGCGCGAAGATGGAAA
ACAGCGGCAGGCACCACCACTCCGCCTGCTGCATCGCACTCTGTACGAAG
TCTAAGCCTCCCCTTCGCCTCCGAGGGGGGCTACCTCTGCAGCGCGAAGA
TGGAAAACAGCGCTATGAATACGAGACCGAGAACTCGTGGGGCCGTGGCG
CGGGAAGCGGCAGCGGCAACGGAGGCAGCAGCTCCGAGGACTCGGAGCAA
GGCGGCGCGGGCGGCAGCGGCGGCGGCGACGGCGGCAGCATCAGCAGCTA
ACCTCTCGCGGGGAAAGATCCACCGTTCGCCATTACAACGAACAACAAGT
TCGCGCAGCAGCAGCAGCAGCAGCAGCAGGGGCGCGGAGCGGGCAAGAAG
AGCGGCACGACAACGGGGGGCTTCAGCGAGGCAACCAGCAGCAGCAACGC
GTTCTCGGTTCTCCACCGCCGCTCCCAATACAAGCTCTCGTCAGAGCCGA
TCGCTATGAATACGAGACCGAGAACTCGTGGGGCCGTGGCGCGGGAAGCG
GCAGCGGCAACGGAGGCAGCAGCTCCGAGGACTCGGAGCAAGGCGGCGCG
GGCGGCAGCGGCGGCGGCGACGGCGGCAGCATCAGCAGCTAACCTCTCGC
GGGGAAAGATCCACCGTTCGCCATTACAACGAACAACAAGTTCGCGCAGC
AGCAGCAGCAGCAGCAGCAGGGGCGCGGAGCGGGCAAGAAGAGCGGCACG
ACAACGGGGGGCTTCAGCGAGGCAACCAGCAGCAGCAACGCGTTCTCGGT
TCTCCACCGCCGCTCCCAATACAAGCTCTCGTCAGAGCCGATCG
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