mRNA_E-siliculosus-1a_F_contig1165.1081.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1165.1081.1
Unique NamemRNA_E-siliculosus-1a_F_contig1165.1081.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: A0A2E6VE13_9FLAO (Uncharacterized protein n=1 Tax=Winogradskyella sp. TaxID=1883156 RepID=A0A2E6VE13_9FLAO)

HSP 1 Score: 185 bits (469), Expect = 6.690e-58
Identity = 88/138 (63.77%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRNK 414
            MSLS+ QR FT ++ CLI++AYDV  IE+T GEAHRT SQ+ LNYFGY+++RGG LGI+LVK ++LSK L S H DRLA+DFNFF++GK      F   KPLGDYWESL P N WGGDFNK++I++GFVD PHFQ  K
Sbjct:    1 MSLSQTQRIFTRNIGCLINYAYDVLEIEMTFGEAHRTNSQMLLNYFGYKVERGGSLGIRLVKSKQLSKVLYSSHGDRLAVDFNFFINGKLTYD--FHKIKPLGDYWESLHPDNVWGGDFNKNNIKDGFVDVPHFQMKK 136          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: UPI0015B99662 (M15 family metallopeptidase n=1 Tax=Winogradskyella forsetii TaxID=2686077 RepID=UPI0015B99662)

HSP 1 Score: 173 bits (438), Expect = 3.290e-53
Identity = 88/135 (65.19%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQ 405
            M LSE+Q+ FT ++ CLI +A D   I LT GEAHRT+SQI LNYFGY + +GG LGIKL K RRLSKTL S HADRLA+DFNFF++GK +    F   K LGDYWESL P N WGGDFNK+ IE+GFVDTPHF+
Sbjct:    1 MKLSEKQQIFTRNIGCLIQYA-DQLEIGLTFGEAHRTQSQILLNYFGYEVVKGGSLGIKLQKTRRLSKTLFSKHADRLAVDFNFFINGKLVYD--FHKVKSLGDYWESLHPDNRWGGDFNKNGIEDGFVDTPHFE 132          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: A0A853DAP5_9FLAO (Peptidase_M15_4 domain-containing protein n=1 Tax=Muricauda sp. ARW1Y1 TaxID=2663843 RepID=A0A853DAP5_9FLAO)

HSP 1 Score: 161 bits (408), Expect = 1.370e-48
Identity = 83/141 (58.87%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQR---GGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRNK 414
            MSL   Q +F YHVACLIH+A D   IE+TLGEAHRT  Q+ LNY+GY +++   G  L +K  K +  SK   S H DRLAID NFF+DGK      +   KPLGDYWESL P N WGGDFNK++IE+GFVDTPHFQR K
Sbjct:    1 MSLRRIQSEFAYHVACLIHYAKDELDIEVTLGEAHRTNDQMLLNYYGYEVKKSPSGNSLYLK--KRKPTSKAKWSSHGDRLAIDLNFFIDGKLTYD--YDKIKPLGDYWESLHPDNVWGGDFNKNEIEDGFVDTPHFQRRK 137          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: A0A0F7DD09_9CAUD (Peptidase_M15_4 domain-containing protein n=1 Tax=Polaribacter phage P12002L TaxID=1647386 RepID=A0A0F7DD09_9CAUD)

HSP 1 Score: 141 bits (355), Expect = 1.140e-40
Identity = 75/137 (54.74%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRN 411
            M LSE+Q  F+ ++A LI +A D+ GI+LT G+A R++SQI LN+FGY++ +GG+ G+KLVKHR+LSKTLKSLHA RLA+DFNFFV+G+ +  D   L + LG++WE L P N WGG +        F+DTPHFQ N
Sbjct:    1 MKLSEKQIIFSKNIASLIVYA-DMIGIDLTFGDAFRSESQILLNFFGYKVVKGGLFGVKLVKHRKLSKTLKSLHAKRLAVDFNFFVNGE-LTYDKEKLLE-LGEFWEGLHPDNKWGGFWK-------FLDTPHFQMN 127          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: A0A2E0JRM0_9FLAO (L-alanyl-D-glutamate peptidase n=1 Tax=Leeuwenhoekiella sp. TaxID=1977054 RepID=A0A2E0JRM0_9FLAO)

HSP 1 Score: 122 bits (307), Expect = 1.650e-33
Identity = 71/137 (51.82%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRN 411
            MSLS+ Q+ FT +VA LI  A  + GIELT+GEA+RTK Q                  ++      SKT+ S H  RLAIDFNFFV+GK      F   KPLGDYWESL P N WGGDFN++D E+GFVDTPHF+ N
Sbjct:    1 MSLSKHQQTFTQNVAKLIFFACGL-GIELTMGEAYRTKEQQ-----------------EIYVRTGKSKTMNSNHLRRLAIDFNFFVNGKLTYD--FDTVKPLGDYWESLHPANRWGGDFNQNDQEDGFVDTPHFEMN 117          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: UPI000D68A98F (M15 family metallopeptidase n=1 Tax=Aquimarina sp. AU119 TaxID=2108528 RepID=UPI000D68A98F)

HSP 1 Score: 122 bits (307), Expect = 2.640e-33
Identity = 70/138 (50.72%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRG-GVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRN 411
            M+L EQQ+ FT+ V+ LI +A+ + G++LT GEA+RT+SQ+ LNYFGY++    G L   LVK +R S TLKS H +R+AIDFNFF++GK    D   L   +G+YWESL   N WGG++  D       DTPHFQRN
Sbjct:    1 MNLIEQQQLFTFDVSLLIQYAHGL-GVKLTSGEAYRTRSQVLLNYFGYKVVNNKGKLS--LVKRKRTSWTLKSKHPERMAIDFNFFINGKLTYDDP--LIVNIGEYWESLSTQNEWGGNWI-DQKTGKRKDTPHFQRN 132          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: UPI0014216768 (M15 family metallopeptidase n=1 Tax=Yeosuana marina TaxID=1565536 RepID=UPI0014216768)

HSP 1 Score: 117 bits (292), Expect = 3.100e-31
Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRN 411
            M LSEQQR FT ++A LI  AY   G+ELT GEA+RT  Q  L      +Q G             SKT+ S H  RLA+DFN FV+G  +  D  T+ KPLGDYW++L PLN WGGD+NK+DI++GF+D+PHF+ N
Sbjct:    1 MKLSEQQRIFTRNIAKLIVFAYQH-GLELTFGEAYRTNEQQLLY-----VQTGK------------SKTMNSNHLRRLAVDFNVFVNGN-LTYDWATI-KPLGDYWKTLHPLNRWGGDWNKNDIKDGFIDSPHFEMN 117          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: UPI001B273EC5 (M15 family metallopeptidase n=1 Tax=Maribacter dokdonensis TaxID=320912 RepID=UPI001B273EC5)

HSP 1 Score: 114 bits (284), Expect = 5.070e-30
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRN 411
            M LSE+Q+ FT++V+ LI  AY++ G+ LT GEA+RT+ Q  L      +Q G             S+T+ S H  RLA+DFN F +G    K  +   KPLGDYWE L P N WGGD+NK+DI++GF+DTPHF+ N
Sbjct:    1 MKLSEKQQIFTFNVSMLICKAYEM-GLTLTFGEAYRTREQQLLY-----VQSGK------------SQTMNSNHLRRLAVDFNVFKEGNLTYK--WEDIKPLGDYWEGLHPTNRWGGDWNKNDIKDGFIDTPHFEMN 117          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: A0A7L8AF75_9FLAO (M15 family peptidase n=1 Tax=Polaribacter haliotis TaxID=1888915 RepID=A0A7L8AF75_9FLAO)

HSP 1 Score: 105 bits (262), Expect = 1.090e-26
Identity = 66/135 (48.89%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQ 405
            M LSE+Q  F+ +VA LI +A D+ GI+LT G+A R       N F  +        +KL     LSKTL SLH  RLA+DFNFF+DGK      F   K LG +W +L P N WGGDFNK+ I++GFVDTPHF+
Sbjct:    1 MRLSEKQIIFSKNVASLIVYA-DMIGIDLTFGDAFR-------NDFTQKQY------VKL----GLSKTLNSLHRKRLAVDFNFFIDGKLTYD--FNDIKELGKFWLTLHPKNRWGGDFNKNSIQDGFVDTPHFE 115          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Match: A0A5R9AQU2_9FLAO (M15 family metallopeptidase n=1 Tax=Maribacter sp. ACAM166 TaxID=2508996 RepID=A0A5R9AQU2_9FLAO)

HSP 1 Score: 103 bits (257), Expect = 6.230e-26
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRIQRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAKPLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRN 411
            M LS  Q+ FT +V+ LI  A++  G+ LT GEA+RT  Q  L      +Q G             S+T+ S H  RLA+DFN F DG    K  +   KPLGDYWE+L   N WGGD+NK+D+++GF+DTPHF+ N
Sbjct:    1 MKLSAHQQIFTLNVSMLICFAFEN-GLRLTFGEAYRTTEQQLLY-----VQSGK------------SQTMNSNHLRRLAVDFNVFKDGNLTYK--WADLKPLGDYWETLHENNRWGGDWNKNDLKDGFIDTPHFEMN 117          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6VE13_9FLAO6.690e-5863.77Uncharacterized protein n=1 Tax=Winogradskyella sp... [more]
UPI0015B996623.290e-5365.19M15 family metallopeptidase n=1 Tax=Winogradskyell... [more]
A0A853DAP5_9FLAO1.370e-4858.87Peptidase_M15_4 domain-containing protein n=1 Tax=... [more]
A0A0F7DD09_9CAUD1.140e-4054.74Peptidase_M15_4 domain-containing protein n=1 Tax=... [more]
A0A2E0JRM0_9FLAO1.650e-3351.82L-alanyl-D-glutamate peptidase n=1 Tax=Leeuwenhoek... [more]
UPI000D68A98F2.640e-3350.72M15 family metallopeptidase n=1 Tax=Aquimarina sp.... [more]
UPI00142167683.100e-3150.36M15 family metallopeptidase n=1 Tax=Yeosuana marin... [more]
UPI001B273EC55.070e-3046.72M15 family metallopeptidase n=1 Tax=Maribacter dok... [more]
A0A7L8AF75_9FLAO1.090e-2648.89M15 family peptidase n=1 Tax=Polaribacter haliotis... [more]
A0A5R9AQU2_9FLAO6.230e-2644.53M15 family metallopeptidase n=1 Tax=Maribacter sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1165contigE-siliculosus-1a_F_contig1165:35385..35804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size420
Model size420
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelBacteria
COG Functional cat.Q
EggNOG OGsCOG3179@1,COG3179@2
EggNOG free text desc.chitinase
Seed eggNOG ortholog1046627.BZARG_781
Seed ortholog evalue8.4e-19
Seed ortholog score100.1
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.1919909-CDS-E-siliculosus-1a_F_contig1165:35384..358041622927684.1919909-CDS-E-siliculosus-1a_F_contig1165:35384..35804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1165 35385..35804 -
1696318637.1949205-CDS-E-siliculosus-1a_F_contig1165:35384..358041696318637.1949205-CDS-E-siliculosus-1a_F_contig1165:35384..35804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1165 35385..35804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1165.1081.1prot_E-siliculosus-1a_F_contig1165.1081.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1165 35385..35804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1165.1081.1

>prot_E-siliculosus-1a_F_contig1165.1081.1 ID=prot_E-siliculosus-1a_F_contig1165.1081.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1081.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
MSLSEQQRKFTYHVACLIHHAYDVCGIELTLGEAHRTKSQIFLNYFGYRI
QRGGVLGIKLVKHRRLSKTLKSLHADRLAIDFNFFVDGKYIEKDTFTLAK
PLGDYWESLDPLNTWGGDFNKDDIENGFVDTPHFQRNKL*
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mRNA from alignment at E-siliculosus-1a_F_contig1165:35385..35804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1165.1081.1 ID=mRNA_E-siliculosus-1a_F_contig1165.1081.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1081.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=420bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1165:35385..35804- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGTTTAAGCGAACAACAAAGAAAGTTTACCTATCACGTAGCGTGTTT AATACACCACGCTTATGACGTTTGTGGTATAGAATTAACGCTAGGAGAAG CACACAGAACCAAAAGCCAAATCTTCTTGAATTATTTTGGCTACAGAATA CAGCGCGGTGGTGTTTTAGGTATAAAGCTTGTAAAACATAGAAGGTTAAG TAAAACCCTAAAAAGTCTACACGCTGACCGATTAGCAATAGACTTCAATT TTTTTGTTGATGGCAAATATATTGAAAAAGACACTTTTACCTTAGCTAAA CCATTAGGCGACTATTGGGAATCATTAGACCCCTTAAATACTTGGGGTGG TGATTTTAATAAAGATGATATTGAAAATGGATTTGTAGACACCCCACACT TTCAAAGAAATAAGCTGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1165:35385..35804-

>mRNA_E-siliculosus-1a_F_contig1165.1081.1 ID=mRNA_E-siliculosus-1a_F_contig1165.1081.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1081.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1165:35385..35804- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGTTTAAGCGAACAACAAAGAAAGTTTACCTATCACGTAGCGTGTTT
AATACACCACGCTTATGACGTTTGTGGTATAGAATTAACGCTAGGAGAAG
CACACAGAACCAAAAGCCAAATCTTCTTGAATTATTTTGGCTACAGAATA
CAGCGCGGTGGTGTTTTAGGTATAAAGCTTGTAAAACATAGAAGGTTAAG
TAAAACCCTAAAAAGTCTACACGCTGACCGATTAGCAATAGACTTCAATT
TTTTTGTTGATGGCAAATATATTGAAAAAGACACTTTTACCTTAGCTAAA
CCATTAGGCGACTATTGGGAATCATTAGACCCCTTAAATACTTGGGGTGG
TGATTTTAATAAAGATGATATTGAAAATGGATTTGTAGACACCCCACACT
TTCAAAGAAATAAGCTGTGAATGAGTTTAAGCGAACAACAAAGAAAGTTT
ACCTATCACGTAGCGTGTTTAATACACCACGCTTATGACGTTTGTGGTAT
AGAATTAACGCTAGGAGAAGCACACAGAACCAAAAGCCAAATCTTCTTGA
ATTATTTTGGCTACAGAATACAGCGCGGTGGTGTTTTAGGTATAAAGCTT
GTAAAACATAGAAGGTTAAGTAAAACCCTAAAAAGTCTACACGCTGACCG
ATTAGCAATAGACTTCAATTTTTTTGTTGATGGCAAATATATTGAAAAAG
ACACTTTTACCTTAGCTAAACCATTAGGCGACTATTGGGAATCATTAGAC
CCCTTAAATACTTGGGGTGGTGATTTTAATAAAGATGATATTGAAAATGG
ATTTGTAGACACCCCACACTTTCAAAGAAATAAGCTGTGA
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