mRNA_E-siliculosus-1a_F_contig1165.1079.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: UPI0013CE83A3 (hypothetical protein n=1 Tax=Mesonia aquimarina TaxID=1504967 RepID=UPI0013CE83A3) HSP 1 Score: 196 bits (499), Expect = 4.170e-59 Identity = 112/251 (44.62%), Postives = 158/251 (62.95%), Query Frame = 1
Query: 10 MSETKHKFELHSDNNEVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFEV 762
M + K + + E+IIR G A + R I GTI HL PS D+V D+++ S + I+R++ +IEF+E+ G+E+ES +LG L F+KF IN YT L+L EFIKMNRS FE++ +AMKLV+ L F+AKV+K++E D R NR++LLAQ V +NIPESFK+ +PIFKG +VEI I+ DLSCRLISP+ ND + ++++I+ + I+EL+P LRIFEV
Sbjct: 1 MKDQKINVSVENGVKELIIRHGEAEKLPAIRKPAVIEGTISVPRIHLENPS--NWLTDKVENG---DNVLAFSRIEINREKKSIEFIEDEGREWESHFLGVLEFTEIFEKFGINSDKSYTSLELGEFIKMNRSHFETRDKAMKLVNELRKFKAKVDKDIENADDGRGNRKILLAQAVDSNIPESFKITIPIFKGQPKQTLDVEISIDAGDLSCRLISPEANDYVEQMRDKLIDAEIEQIRELHPTLRIFEV 246
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: A0A519K9V2_FLASP (Uncharacterized protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519K9V2_FLASP) HSP 1 Score: 169 bits (427), Expect = 2.540e-48 Identity = 99/239 (41.42%), Postives = 142/239 (59.41%), Query Frame = 1
Query: 46 DNNEVIIRTGNAPENFEPRLSIKI-NGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFE 759
+ NEV+IR G A + P IKI N TI+ ++L K ++ + I S+++ + + ++ +E G L L+PD + IN Y+ LA+FIKMNR +FE+K AMKLVSTL +F+A ++K++EA D+RANRRVL+AQ TNIPE+F L LP+F G E V VEI IN DLSC LISPD+ II+ ++I+ + AI+ LYP+LR+F+
Sbjct: 17 EKNEVVIRRGEAAKIHIP-TGIKIENATINAVQEYLKKNGISADEIQN-------------SFVVFSYENLYLKLSFAHRRENPDSIEGKLKLHPDLSVWDINGKTSYSTFSLADFIKMNRHYFETKDVAMKLVSTLRDFKASIDKKIEAADDKRANRRVLVAQVAETNIPENFALLLPVFVGTEPVKVNVEININADDLSCNLISPDLKQIIDQETKKVIDDELDAIKALYPELRVFQ 241
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: A0A378RNH7_MYROD (Uncharacterized protein n=2 Tax=Myroides TaxID=76831 RepID=A0A378RNH7_MYROD) HSP 1 Score: 160 bits (406), Expect = 2.950e-45 Identity = 98/244 (40.16%), Postives = 141/244 (57.79%), Query Frame = 1
Query: 28 KFELHSDNNEVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFE 759
K + + NE+++R G+A R + TI + LSK ++T E I LD ++ S D+ T+E + + ++ LNPD ++F IN YT +LA+FIKMNR +FESK AM+LVS L NF+AKV+KEVE +++R NRR+LL Q + +NIPESF L+LP+FKG VEI IN D +C LISPD+ + I +IN Q I+E++P LRI++
Sbjct: 5 KINVENGVNELVVRQGDASAVHTGRNVNVDSVTIPAVAEFLSKENITTEII--------LDSVLSFSI-----DKRTMELRYGVTQRHPYQINSAIELNPDLERFGINSGNSYTTFELADFIKMNRHYFESKPVAMQLVSELKNFKAKVDKEVENSSNDRGNRRMLLNQVIDSNIPESFVLELPVFKGQPKARVVVEININD-DFTCTLISPDLKEFILLESETLINQQLDLIKEIHPQLRIYQ 234
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: UPI001C707157 (hypothetical protein n=1 Tax=Bacteroides fragilis TaxID=817 RepID=UPI001C707157) HSP 1 Score: 160 bits (405), Expect = 6.370e-45 Identity = 92/241 (38.17%), Postives = 142/241 (58.92%), Query Frame = 1
Query: 37 LHSDNNEVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFE 759
L S E++IR G A E EP + + I+GT+D + L T+ + V + +++L+DR+ +TI N + S+ GSL ++P+F++F INE T ++AE KMNRS FE+K AMKLV+ L NF AKV+KE+E + R ++R+L+ Q V +N+PE+F L +PIFKG VE+ INP D SC L+S D ND++ ++ ++ + I+E+ PD+ I E
Sbjct: 22 LPSQCGEIVIREGKAMEVREP-VKVGISGTLDAPARWLE----TRMRLGLVNQGA--------NHVLVDREHLTITLQCNENNHYGSKISGSLIVSPEFRRFGINEGEYITNFEMAELFKMNRSHFETKAVAMKLVTELQNFRAKVDKEIEKSDNNRGDKRLLINQVVQSNLPEAFNLHIPIFKGTPKQTVNVEVYINPSDFSCTLVSADANDLLEDMRDSQMDAVLSRIREVCPDIVIIE 249
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: A0A1I3E0V8_9SPHI (Uncharacterized protein n=1 Tax=Parapedobacter indicus TaxID=1477437 RepID=A0A1I3E0V8_9SPHI) HSP 1 Score: 159 bits (403), Expect = 1.170e-44 Identity = 94/236 (39.83%), Postives = 140/236 (59.32%), Query Frame = 1
Query: 55 EVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFES-RYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFE 759
E+IIR G A EP L +KI G +D+ F+ L Q+ + E+ + A ++ ++R+ +TI N + + + +G ++ +P FKKF IN T ++AE IKMNRS FE+ AMKLV L NF+AKV K++E D+R NR++LL QTV +N+PE FK+ +PIFKG FEVE+ NP DL+C L+SP+ ND + ++ I+ I+E+ PD+ I E
Sbjct: 26 ELIIREGKALPALEP-LKVKIAGILDSPFRFL------QKRVGEIDQKKA--------FITVNRESLTITLDFNEDDPYSNGQIVGVITEHPTFKKFGINSGHYRTTYEMAELIKMNRSAFENIQVAMKLVHELKNFKAKVEKDLEKNNDDRGNRKILLQQTVESNVPEKFKVVMPIFKGMPKETFEVEVYFNPDDLTCTLVSPEANDTLEEIRDSAIDEVLHEIEEIAPDIVIIE 246
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: A0A6I0JRS7_BACUN (Uncharacterized protein n=2 Tax=Bacteroides TaxID=816 RepID=A0A6I0JRS7_BACUN) HSP 1 Score: 158 bits (400), Expect = 3.570e-44 Identity = 91/235 (38.72%), Postives = 137/235 (58.30%), Query Frame = 1
Query: 55 EVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFE 759
E+IIR G A E EP + + I+GTID + L T+ + V + ++L+DR+ + I N + S+ GSL ++P+FK+F INE T ++AE KMNRSFFE+K AMKLV+ L NF AKV+KE+E + R ++R+L+ Q V +N+PE+F L +PIFKG VE+ INP D SC L+S + ND++ ++ +++ I + PD+ I E
Sbjct: 28 EIIIREGKAVEVHEP-VKVVISGTIDAPARWLE----TRMRLGLVNQGTY--------HVLVDRENLNITLKCNENNHYGSKISGSLMVSPEFKRFGINEGEYITNFEMAELFKMNRSFFETKAIAMKLVTELQNFRAKVDKEIEKSDNNRGDKRLLINQAVQSNLPEAFNLHIPIFKGTPKQTINVEVYINPSDFSCTLVSAEANDLLEEMRDREMDSVLERISAVCPDIVIIE 249
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: A0A1I5E1X1_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium ummariense TaxID=913024 RepID=A0A1I5E1X1_9FLAO) HSP 1 Score: 157 bits (398), Expect = 4.800e-44 Identity = 95/235 (40.43%), Postives = 135/235 (57.45%), Query Frame = 1
Query: 55 EVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFE 759
E++IR G A R N TI + F+ LSK + V ++ LD + SY D + + V + + GS+ LNPD + F+IN+ Y+ QLA+FIKMNR FESK+ AM+LVSTL N +A VN+ +EA D+R N+R L+ Q V +NIPESF ++LPIFKG V VE+ ++ DL C L+SPD+ II +I + I+EL+P LRI++
Sbjct: 15 ELVIRNGEAVPVHTGRDVNVTNVTIFSLFEFLSK--------ENVLLSIILDSALIFSY-----DNLAMRLVYGLTERHPYKLNGSILLNPDLEAFEINKGKRYSTFQLADFIKMNRHLFESKSVAMELVSTLKNIKATVNRAIEANKDDRGNKRALIDQVVQSNIPESFNIELPIFKGQPKVVVPVEVVLDE-DLECMLVSPDLKQIIAEESERLIGGEVEKIRELHPQLRIYQ 235
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: A0A264YA74_9BACT (Uncharacterized protein n=1 Tax=Prevotella sp. 885 TaxID=2022527 RepID=A0A264YA74_9BACT) HSP 1 Score: 157 bits (396), Expect = 1.300e-43 Identity = 93/235 (39.57%), Postives = 143/235 (60.85%), Query Frame = 1
Query: 55 EVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFE 759
E IIR G+A EP+ ++ I+GTID + + K D++ A A ++L+DRD+M+I + + + +G+L+L+ + ++F IN + +A+ IK RS+FE+ AMKLV+ L NF+AKV+KE+E D+R NRR L+AQTV +N+PESFK++LPIFKG V EVE+ INP DLSC L+SP+ +DI+ ++ ++ I+E P + I E
Sbjct: 27 ETIIRFGDALPLKEPK-AVSISGTIDAPARWVEKRK------DDIVSADA--------HVLVDRDKMSITLKTDENSAYSDQIIGTLTLSSEMQEFGINTGESMSCFDMADRIKQLRSYFETTQTAMKLVTELRNFKAKVDKELELSDDKRGNRRGLVAQTVDSNLPESFKIELPIFKGMPKVTIEVEVEINPNDLSCTLVSPEAHDIVLKERDIHMDAVLERIKEAAPAIVIIE 246
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: A0A2E4PPI6_FLASP (Uncharacterized protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A2E4PPI6_FLASP) HSP 1 Score: 156 bits (394), Expect = 2.020e-43 Identity = 95/248 (38.31%), Postives = 139/248 (56.05%), Query Frame = 1
Query: 22 KHKFELHSDNN--EVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFE 759
K K E+ +N+ + IR G P+ P + I +A++ L K + +I + SY+ +E I N G L L+PD KKF+IN+ YT LA+FI+MNR +FESK A+KLVS L NF+AKV+KE+E+ D+RAN ++ + Q V +NIP F L LP+F G+E +VEI IN D+SC LISP + ++I++ II+ Q I+ELYP L++F+
Sbjct: 3 KKKIEITVENSVKALDIREGKLPDLHIPGKIEIYDHVISSAYEFLRKEGIEPCFIKD-------------SYIRYSIEERYINLFYNTRNINPDTVTGVLKLHPDLKKFEINQGKSYTTHSLADFIRMNRHYFESKDVALKLVSELQNFKAKVDKEIESSDDKRANVKMFMVQKVVSNIPTEFVLLLPLFIGSEKTPIKVEIDINAQDISCTLISPALKELIDTESKAIIDQQLKQIEELYPQLKMFQ 237
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Match: UPI001EFDE889 (hypothetical protein n=1 Tax=Flavobacterium algicola TaxID=556529 RepID=UPI001EFDE889) HSP 1 Score: 153 bits (387), Expect = 2.130e-42 Identity = 92/249 (36.95%), Postives = 141/249 (56.63%), Query Frame = 1
Query: 16 ETKHKFELHSDNNEVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPSVTQEYIDEVTKAVALDDIIDVSYLLIDRDEMTIEFVENAGKEFESRYLGSLSLNPDFKKFKINESADYTPLQLAEFIKMNRSFFESKTEAMKLVSTLMNFEAKVNKEVEAKADERANRRVLLAQTVSTNIPESFKLKLPIFKGAEAVAFEVEIGINPVDLSCRLISPDVNDIINSTKNEIINTQKAAIQELYPDLRIFEV 762
E K + +N V + G A + + G I++A+++LSK +V + I E +K D + ++ LL D + T + +E G+L L+PD +KF IN Y+ +LA+FIKMNR +FE+K AMKLVS L NFE KVN+++E + D+R N+R L+ Q V +NIP F L+LP+F G + E+E+ IN C LISPD+ +I+ I+ Q I+ +P+L+IFE+
Sbjct: 2 ENKLNITVEKENAVVTLLHGPAEPVYHNAAIVVKGGAINSAYEYLSK-AVVEATIIEHSKIEFCYDKLYIN-LLYDARQRTPDVIE-----------GALKLHPDLQKFNINSGKSYSTFELADFIKMNRHYFENKEYAMKLVSELRNFEGKVNRDIEGRTDDRGNKRALINQVVESNIPSGFFLELPVFVGQDKTRLEIEVSIN-ASFECSLISPDLKQLIDLESKTILGNQLELIKAKHPELKIFEL 236 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1165.1079.1 >prot_E-siliculosus-1a_F_contig1165.1079.1 ID=prot_E-siliculosus-1a_F_contig1165.1079.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1079.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=252bp MSETKHKFELHSDNNEVIIRTGNAPENFEPRLSIKINGTIDTAFQHLSKPback to top mRNA from alignment at E-siliculosus-1a_F_contig1165:28534..29298- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1165.1079.1 ID=mRNA_E-siliculosus-1a_F_contig1165.1079.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1079.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=765bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1165:28534..29298- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1165:28534..29298- >mRNA_E-siliculosus-1a_F_contig1165.1079.1 ID=mRNA_E-siliculosus-1a_F_contig1165.1079.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1079.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1512bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1165:28534..29298- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |