mRNA_E-siliculosus-1a_F_contig1165.1075.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: A0A7L8AFC4_9FLAO (Tyrosine-type recombinase/integrase n=1 Tax=Polaribacter haliotis TaxID=1888915 RepID=A0A7L8AFC4_9FLAO) HSP 1 Score: 244 bits (623), Expect = 1.900e-77 Identity = 119/260 (45.77%), Postives = 184/260 (70.77%), Query Frame = 1
Query: 1 MNTLEIFEKRLKQKNYSPRTIKAYVFYLKRFLMAQQKSPSHITFGDITKYLLNQEYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKRHLHKDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRL 780
M ++EI++++L KNYS RTI+ YV YL++FL +K+P HIT +I YLLN+ YSS S QNQ+IG+LKL+AKY+L + +H++KIERP+REKKLP ++D + I ++NLKH+ +LT+ S LR+SE++N+K D+D+ R V+ + GKG KDRI ++ ++L+ +Y+ +YR EY+FNGQ +Y+A+S+ +LVK+++H AS H LRH+ ATY + G I ++ +GH+++KTT +Y S K +Q L
Sbjct: 1 MKSVEIYKQKLTNKNYSKRTIETYVCYLEKFLQEIKKNPYHITTKEIENYLLNKNYSSISVQNQVIGSLKLFAKYILGKKEVHLNKIERPKREKKLPRIIDAELLAERISMVKNLKHKAILTLGLSCGLRISEVINLKWLDLDKKRNVLNVINGKGKKDRITFLNNNLIELLTEYWLEYRSEEYVFNGQFKNQYSATSIQRLVKKYIHPTASFHLLRHSFATYALDNGTGIGALADIMGHNSIKTTEIYYHTSLKAVQNL 260
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: A0A6J5Q1U6_9CAUD (Integrase n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5Q1U6_9CAUD) HSP 1 Score: 218 bits (556), Expect = 2.810e-67 Identity = 117/264 (44.32%), Postives = 176/264 (66.67%), Query Frame = 1
Query: 10 LEIFEKRLKQKNYSPRTIKAYVFYLKRFLMAQ-QKSPSHITFGDITKYLLNQEYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKI--ERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKRHLHKDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRLPIPM 792
++I E++ NYSPRT + Y+ ++KRFL + +K H D YL + ++ S SQQNQII +++ K+ LN+ DK+ +RPR EKKLP V+D + ++ IEN+KH+ +LT+ FS LRVSE++++K+ DID RM+I I KG KDRIVP+SQ L+L+ +Y+++YRP EYLFNGQ S KY+ S K+ K+++ K++S HTLRH+ T L E G D+ I K GHS+ KTT +Y +SN+V+ ++ +P+
Sbjct: 7 IKICEEKFIYLNYSPRTRENYMSHIKRFLESLGEKQIIHCNSSDFQNYLDSYKFLSVSQQNQIINSIRFLYKFGLNKK---YDKVSFKRPRSEKKLPKVIDSDFIRERLEKIENVKHKSILTLTFSVGLRVSEVVDLKISDIDSKRMLIHIKNAKGKKDRIVPLSQRVLELLREYWKEYRPTEYLFNGQSSTKYSIGSCQKIYKKYIDKNSSIHTLRHSSFTSLLENGTDLRIIQKIAGHSSSKTTEIYTHVSNQVLNKVNLPI 267
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: UPI00115F193B (tyrosine-type recombinase/integrase n=1 Tax=Changchengzhania lutea TaxID=2049305 RepID=UPI00115F193B) HSP 1 Score: 203 bits (516), Expect = 3.130e-61 Identity = 105/259 (40.54%), Postives = 168/259 (64.86%), Query Frame = 1
Query: 4 NTLEIFEKRLKQKNYSPRTIKAYVFYLKRFLMAQQKSPSHITFGDITKYLLNQEYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKRHLHKDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRL 780
+TLE EK+L+ +NYS +TIK Y+ Y ++FL++ K HI+ + YL + Y+S SQQNQII ++K ++ R L+ I RPR+EKKLP ++D + I I NLKH+ +L++ S LR+SE++N+K +DR R + + GKG KDR ++ + L+ +Y+++Y+P +Y+FNGQ KY+ SS+ ++VK+H+H+ AS H LRH+ ATY + G ++A +SK +GH N KTT +Y +SN ++ +
Sbjct: 7 STLEKLEKKLRFRNYSEQTIKTYLSYSEKFLISFNKDVYHISVKEAENYLESYPYTSISQQNQIISSVKFLYINVVGRK-LNTLNIVRPRKEKKLPKIIDAELLAEKINKINNLKHKAILSLGLSCGLRISEVINLKWEHLDRKRNTLTVINGKGRKDRTTILNDNMIDLLTEYWKQYKPKDYVFNGQFKNKYSQSSIQRIVKKHIHQKASFHFLRHSFATYALDNGTELAPLSKSMGHQNTKTTEIYYHVSNNSLKTI 264
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: A0A7C4P9V4_9BACT (Recombinase n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C4P9V4_9BACT) HSP 1 Score: 193 bits (490), Expect = 3.160e-57 Identity = 115/273 (42.12%), Postives = 174/273 (63.74%), Query Frame = 1
Query: 1 MNTLEIFEKRLKQKNYSPRTIKAYVFYLKRF-LMAQQKSPSHITFGDITKYLLNQ---EYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKRHLH-----KDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRLPIPM 792
MN L+ F+K L K YS RTIK+Y LK F L + K+P +I +I +++ + S S Q ++G++KL+ +L R N ++ + R EKKLP+VLD + + +I+NLKH+ +L++++S LR+SE++ +KL DID RM+IKIN GKG KDR V +S++ L ++ +YY++Y+ EYLF GQK KY+A SV + K L K+AS HTLRH+ AT+L E G DI I + LGHS++KTT +Y ++S+ I + P+
Sbjct: 1 MNYLDDFKKLLTIKRYSFRTIKSYSNALKTFFLYFEHKNPENINPSEIEQFINKMVLIDNISQSYQKVLVGSIKLFYNELL-RKNYKLNYLYPDRPEKKLPVVLDKSEIQLLLNSIQNLKHKAILSLIYSAGLRLSEVIEMKLTDIDSKRMLIKINQGKGKKDRYVMLSEKLLIILIEYYKEYKLKEYLFEGQKGGKYSARSVQAIFKEALRNSKIKKEASVHTLRHSFATHLLESGTDIRIIQQLLGHSSLKTTQIYTQVSSSKISEIKSPL 272
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: A0A7X9BC17_9MOLU (Tyrosine-type recombinase/integrase n=1 Tax=Mollicutes bacterium TaxID=37628 RepID=A0A7X9BC17_9MOLU) HSP 1 Score: 192 bits (487), Expect = 5.130e-56 Identity = 107/262 (40.84%), Postives = 167/262 (63.74%), Query Frame = 1
Query: 31 LKQKNYSPRTIKAYVFYLKRFLMAQQKSPSHITFGDITKYL----LNQEYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKR-----HLHKDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRLPIP 789
++ K YS +TI Y+ YL + +K +T DI+KY+ L++ YS QNQ++ A+KL K +N N+ IDK+ERP+ +K+LP+VL + + I+NLKH+ +L++++S LRVSE +N++L DID +RM+I I GKG KDR+V +S + L+L+ +YY+ Y+P +YLF G+K KY+ S+ + + ++ AS HTLRH+ AT+L E G D+ I + LGHS+ KTT +Y +S K IQ++ P
Sbjct: 76 MRNKRYSEKTINQYLKYLNELKLNLKKEFIEMTNEDISKYIYTKCLDKSYSF---QNQLVNAIKLMVK--INNLNIIIDKLERPKAKKELPIVLSKEDIQNLLNTIKNLKHKTILSIIYSAGLRVSEAVNLELKDIDSNRMLINIRGGKGKKDRLVMLSPKILELLREYYKIYKPSKYLFEGEKEEKYSVRSIQSIFSKAKKEANIKLKASVHTLRHSYATHLLEAGTDLRYIQELLGHSSSKTTEIYTHVSTKSIQKIKSP 332
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: A0A524NTI3_9BACT (Integrase n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A524NTI3_9BACT) HSP 1 Score: 188 bits (478), Expect = 8.010e-55 Identity = 106/264 (40.15%), Postives = 165/264 (62.50%), Query Frame = 1
Query: 28 RLKQKNYSPRTIKAYVFYLKRFLMA-QQKSPSHITFGDITKYLLN---QEYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKR-----HLHKDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRLPIPM 792
+L +K YSP TIK YV Y+K F Q S ++ I Y+LN + S SQQNQ I A+K Y + +L R + + RP++EKKLP +L E +K NLKH+C+L L+S LR SEL+N+K+ DID RM+I+I+ KG KDR +S++ +KL+ YY+ Y+P +LF GQ+ +Y+A+S+ + ++ + K A+ HTLRH+ AT+L E+G+++ I + LGHS++KTT +Y +S+K + ++ P+
Sbjct: 56 KLIEKRYSPNTIKTYVSYIKSFAEEFQDSSLESVSTQQINNYILNLIRMKGISASQQNQRISAIKFYYEQVLGRKKAYYQ-LSRPKKEKKLPHILTIDEVEHLLKCCRNLKHKCILMTLYSAGLRRSELINLKINDIDSKRMLIRISHSKGNKDRYTLLSEKLVKLLRDYYKIYQPKYWLFEGQRGGQYSATSIENVFRKAMKQARITKYATPHTLRHSFATHLLEQGINLRYIQEILGHSSLKTTEIYTHVSSKQLTKIQNPL 318
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: A0A6H9I481_9BACT (Integrase n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A6H9I481_9BACT) HSP 1 Score: 186 bits (473), Expect = 1.040e-54 Identity = 106/258 (41.09%), Postives = 160/258 (62.02%), Query Frame = 1
Query: 43 NYSPRTIKAYVFYLKRFL-MAQQKSPSHITFGDITKYLLNQ--EYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKR-----HLHKDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRLPIPM 792
NYS T+K Y + +FL + PS IT +I +YLL + + S S+QNQ I ++K + + +LNR + +I RP++ +LP V + + A ENLKH+C+L + ++G LRVSE++N+K+ DID RM+I I KG KDRIV +SQ+ L ++ +YY+ Y+P YLF G KY+A S+ L+K + K S HTLRH+ AT+L E G DI +I K LGH++++TTM+Y IS + I ++ P+
Sbjct: 12 NYSESTLKNYTNHFSKFLEYFSDRKPSSITKKEIMQYLLEKWNDKLSASEQNQKINSIKFFYEKVLNRPK-EVYEIPRPKKPFQLPGVFSENEVRRILDAAENLKHKCILCLAYAGGLRVSEIINLKISDIDSDRMIIHIKNSKGKKDRIVMLSQKLLIILREYYKSYKPKAYLFEGMNGGKYSARSIQSLLKTIKKRAGVTKRGSVHTLRHSFATHLFEGGTDILSIKKLLGHNSLRTTMIYTHISKEHINKIQSPL 268
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: UPI001357F362 (tyrosine-type recombinase/integrase n=1 Tax=Sunxiuqinia indica TaxID=2692584 RepID=UPI001357F362) HSP 1 Score: 184 bits (468), Expect = 5.070e-54 Identity = 106/261 (40.61%), Postives = 158/261 (60.54%), Query Frame = 1
Query: 19 FEKRLKQKNYSPRTIKAYVFYLKRFLM---AQQKSPSHITFGDITKYLLNQEYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKRHLHKDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRLPIPM 792
F K L+ KNYS TI+ Y +K FL+ PS + I ++++ + ++T +Q + ALKL+ KY + + IE PR EK LP V+D K I I+N+KH+ +L++ FS LRVSE++N+K+ DID RM+I I KG KDRIVP+S L L+ Y++ +RP YLFNGQ SLKY+ +S K+ K+H+ K + H LRH+ T L E G D+ I K GH++ KTT +Y ++NK + ++ +P+
Sbjct: 10 FTKDLEFKNYSKNTIENYASQVKLFLVDFTGIATKPSEVNQQQIKEWIMQAKTTNTCKQR--MSALKLFYKYTIKQPR-KFRGIEYPRSEKHLPQVIDKDLIIKRINQIKNIKHKAILSLAFSVGLRVSEVVNLKIEDIDSTRMIIHIKNAKGRKDRIVPLSMNILNLLRAYFKIHRPKVYLFNGQTSLKYSVTSCQKIFKQHIDKKSHFHILRHSSFTALLETGTDLRIIQKIAGHASSKTTEIYTHVTNKSLSKVTLPI 267
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: A0A2H0XHS2_9BACT (Integrase n=2 Tax=unclassified Candidatus Stahlbacteria TaxID=2767084 RepID=A0A2H0XHS2_9BACT) HSP 1 Score: 186 bits (473), Expect = 7.650e-54 Identity = 105/273 (38.46%), Postives = 170/273 (62.27%), Query Frame = 1
Query: 1 MNTLEIFEKRLKQKNYSPRTIKAYVFYLKRFLMAQQKSPSHITFGDITKYLL---NQEYSSTSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTA-SSVNKLV-----KRHLHKDASAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRLPIPM 792
++ E + L + YS +T+K+Y+++ + FL K PS I DI YLL +++S+TS NQ I ALK Y MLNR ++ +++RPR++KKLP+VL K + +++N+KH+ +L +++S LRV E++ +K DID RM+I I KG KDR +S++ L+++ QY+RKY+P ++LF G K +Y + SV+K+ K + K+ S HTLRH+ AT+L E G D+ I + LGH++ KTT +Y +S K + ++ P+
Sbjct: 63 LHNFEDIRRELLSRKYSHKTVKSYIYFNRDFLNFTDKKPSDINDNDIKDYLLYLAEEKHSATSTLNQAINALKFYYGTMLNRKFVY--EVKRPRKDKKLPVVLSKEEVAKILNSVDNVKHKAILMLVYSAGLRVGEVVKLKPVDIDSKRMLIHIRGSKGRKDRYTLLSEKALEILRQYWRKYKPEKWLFGGAKEGRYLSIRSVDKIFRNASDKAGIKKEVSVHTLRHSFATHLLEGGTDLRYIQELLGHAHSKTTEIYTHVSTKSLGKITSPL 333
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Match: A0A3P1ATS4_9FLAO (Integrase n=1 Tax=Flavobacterium viscosum TaxID=2488729 RepID=A0A3P1ATS4_9FLAO) HSP 1 Score: 186 bits (471), Expect = 1.410e-53 Identity = 116/271 (42.80%), Postives = 161/271 (59.41%), Query Frame = 1
Query: 10 LEIFEKRLKQKNYSPRTIKAYVFYLKRFLMAQQKSP-SHITFGDITKYLLNQEYS-----STSQQNQIIGALKLYAKYMLNRSNLHIDKIERPRREKKLPMVLDGPTTEKNIKAIENLKHRCLLTVLFSGALRVSELLNIKLGDIDRHRMVIKINLGKGAKDRIVPVSQETLKLIEQYYRKYRPVEYLFNGQKSLKYTASSVNKLVKRHLHKDA-----SAHTLRHTCATYLHEKGVDIATISKFLGHSNVKTTMVYLKISNKVIQRLPIP 789
LEIF++ L K YS TI Y LK FL + P +IT DI Y N EY S S QNQI+ A+KLY K + N+ + I+ I RP+REKKLP+VL P K I +++N+KH+ LL +++S LR+SE LN++ DID RM+I I KG KDR +S++ L L+ +YY Y P +YLF GQ KY+ S ++K+ K + HTLRH+ AT+L E G D+ I LGHS+ KTTM+Y +SN ++++ P
Sbjct: 71 LEIFKRYLLSKRYSTNTISTYCDALKSFLFFYKDKPIKNITNEDIIVY--NNEYILKNKLSASYQNQIVNAIKLYFKIVENKK-IQIEDIHRPKREKKLPIVLSKPEIMKVINSLDNMKHKTLLALIYSAGLRISEALNLQPKDIDSVRMLIHIKDAKGKKDRYTLLSEKVLLLLREYYTLYTPKKYLFEGQLGGKYSNRSAQIVLKQTAQKAGILKPITLHTLRHSFATHLLESGTDLRYIQALLGHSSPKTTMIYTHVSNSSLKKIINP 338 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1165.1075.1 >prot_E-siliculosus-1a_F_contig1165.1075.1 ID=prot_E-siliculosus-1a_F_contig1165.1075.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1075.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=265bp MNTLEIFEKRLKQKNYSPRTIKAYVFYLKRFLMAQQKSPSHITFGDITKYback to top mRNA from alignment at E-siliculosus-1a_F_contig1165:20031..20825- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1165.1075.1 ID=mRNA_E-siliculosus-1a_F_contig1165.1075.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1075.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=795bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1165:20031..20825- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1165:20031..20825- >mRNA_E-siliculosus-1a_F_contig1165.1075.1 ID=mRNA_E-siliculosus-1a_F_contig1165.1075.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1075.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1590bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1165:20031..20825- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |