mRNA_E-siliculosus-1a_F_contig1165.1072.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1165.1072.1
Unique NamemRNA_E-siliculosus-1a_F_contig1165.1072.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1072.1 vs. uniprot
Match: S0A176_9CAUD (Structural protein n=1 Tax=Cellulophaga phage phi39:1 TaxID=1327993 RepID=S0A176_9CAUD)

HSP 1 Score: 174 bits (442), Expect = 2.280e-53
Identity = 89/151 (58.94%), Postives = 118/151 (78.15%), Query Frame = 1
Query:    1 NLKVTEVKGFDELNRNLKRLNDRTKRSEILKLQRRLARPVVKAYRQQLPEDSGTLKRSVAVKTVPSRKSGGNPVIAVRPGKSGRNDAFYKFMIVKKGTKLGSRARGSRKGKNNVVTQARNRTLGQIENGLVRTSEEEGAKYIQKQIDRLSR 453
            NL +  V+GF+ELN  LK+L+D  KR E+L LQR+LA+P+ KAY   LP DSGTL +SVA+KTV  ++SGGNPVI+V PGK G+ND +YKFM++KKG+K GS  +GSR+G NNVVT  RN+TL QI +G+V +SE    KY+QK+ID+LS+
Sbjct:    2 NLNIEGVEGFEELNAKLKKLSDSVKRKEVLGLQRQLAKPIQKAYAANLPVDSGTLSKSVAIKTVSIKRSGGNPVISVEPGKRGKNDGYYKFMVIKKGSKPGSIKKGSRRGLNNVVTDGRNKTLKQISSGVVNSSEATVVKYVQKKIDKLSK 152          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1072.1 vs. uniprot
Match: UPI000EF58133 (hypothetical protein n=1 Tax=Mesonia aquimarina TaxID=1504967 RepID=UPI000EF58133)

HSP 1 Score: 154 bits (390), Expect = 2.620e-45
Identity = 80/160 (50.00%), Postives = 113/160 (70.62%), Query Frame = 1
Query:   10 VTEVKGFDELNRNLKRLNDRTKRSEILKLQRRLARPVVKAYRQQLPEDS------------GTLKRSVAVKTVPSRKSGGNPVIAVRPGKSGRNDAFYKFMIVKKGTKLGSRARGSRKGKNNVVTQARNRTLGQIENGLVRTSEEEGAKYIQKQIDRLSR 453
            V E+KGF+ELNR LK+L+DR  R EILK+QR+LA+P+ +AY + LP  +            GTL +SV+ KTVP+ K GGNP + +RPGK G++DA+Y+FM+VKKGT++GS  RGSRKGKN VV +AR+     +E   V   E++  + IQ++ID+LS+
Sbjct:    5 VVEIKGFNELNRKLKKLDDRVTRKEILKIQRKLAKPLEQAYARNLPVGTRDKRRFGTEYPAGTLSKSVSTKTVPASKVGGNPSVVIRPGKKGKHDAYYRFMVVKKGTRVGSNKRGSRKGKNTVVEKARDAAFSSVEQSAVSKYEQQAERVIQREIDKLSK 164          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1072.1 vs. uniprot
Match: UPI0015BC3EA2 (HK97 gp10 family phage protein n=1 Tax=Galbibacter sp. BG1 TaxID=1170699 RepID=UPI0015BC3EA2)

HSP 1 Score: 77.0 bits (188), Expect = 8.020e-15
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = 1
Query:   10 VTEVKGFDELNRNLKRLNDRTKRSEILKLQRRLARPVVKAYRQQLPEDS-------------GTLKRSVAVKTVPSRKSGGNPVIAVRPGKSGRNDAFY--KFMIVK--------KGTKLGSRARGSRKGK-----NNVVTQARNRTLGQIENGLVRTSEEEGAKYIQKQIDRL 447
            + E+KGF EL + +K+L D+ K+ E++K+ R+ A+  VKA RQ+ P+ S             G LK+S+ V+     K   NP+I VRP  SG+ D FY   F+I          K ++ G+R+R S   K     N  + +A  RT G++    ++++E    KYIQK IDRL
Sbjct:    5 IFEIKGFKELEQKIKKLPDKAKKREMVKILRKSAQTTVKAARQEAPQSSRPHYLRGGKKIQPGNLKKSIGVQVARKAK---NPMIVVRPKSSGKYDGFYGRAFVIFGHNVYRAGFKRSRKGNRSRNSLGAKAVIKANPFMNRAYQRTEGKVSQESLKSTE----KYIQKLIDRL 171          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1072.1 vs. uniprot
Match: A0A1B9Y3I1_9FLAO (Uncharacterized protein n=1 Tax=Tenacibaculum soleae TaxID=447689 RepID=A0A1B9Y3I1_9FLAO)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-9
Identity = 57/168 (33.93%), Postives = 85/168 (50.60%), Query Frame = 1
Query:   10 VTEVKGFDELNRNLKRL-NDRTKRSEILKLQRRLARPVVKAYRQQLPEDS------------------GTLKRSVAVKTVPSRKSGGNPVIAVRPGKSGRNDAFYKFMIVKKGTKLGSRARGSRKGKNN-VVTQARNRTLGQIENGLVRTSEEEGAKYIQKQIDRLSR 453
            + E++GF EL   LK+L ND+ KR E+LK+  ++A P VKA +Q  P                     GT ++S+  KT+   K   NP + V P    R D +Y    V KGTK         K K+N  + +A  +T G + +     +E++ A+YIQKQI+RLS+
Sbjct:    5 LVEIQGFKELQTKLKKLGNDKDKRKEVLKILGKVANPTVKAAKQLAPVSKKTHLQKRKGQRFGTYVTPGTGRKSIGKKTMRRAK---NPTVYVSPRSVKRADGWYLRQFVIKGTK---------KIKSNPFIDKAYQQTKGLVTSD----AEKKVARYIQKQINRLSK 156          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1072.1 vs. uniprot
Match: UPI001EF3763D (hypothetical protein n=1 Tax=Tenacibaculum sp. Mcav3-52 TaxID=2917762 RepID=UPI001EF3763D)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-9
Identity = 54/168 (32.14%), Postives = 85/168 (50.60%), Query Frame = 1
Query:   10 VTEVKGFDELNRNLKRL-NDRTKRSEILKLQRRLARPVVKAYRQQLPEDS------------------GTLKRSVAVKTVPSRKSGGNPVIAVRPGKSGRNDAFYKFMIVKKGTKLGSRARGSRKGKNN-VVTQARNRTLGQIENGLVRTSEEEGAKYIQKQIDRLSR 453
            + E+ GF EL + +K L ND+ K  E++K+  ++A P VKA +   P                     GT +RS+  KT+   K   NP++ V P  + R D +Y    V +GTK         K K+N  + +A  +T G    G+ + +E++ +KYIQKQI+RLS+
Sbjct:    5 LIEISGFKELEKKIKSLANDKVKNREVVKILNQVANPTVKAAKNLAPVSRKHHVQKRKGQRFGTVISPGTGRRSIGKKTMRKAK---NPMVIVSPRSTRRADGWYLRQFVIRGTK---------KIKSNPFIDKAYEQTKG----GVTKDAEQKVSKYIQKQINRLSK 156          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1072.1 vs. uniprot
Match: A0A2K8V8C9_9FLAO (Uncharacterized protein n=1 Tax=Tenacibaculum sp. SZ-18 TaxID=754423 RepID=A0A2K8V8C9_9FLAO)

HSP 1 Score: 61.2 bits (147), Expect = 6.350e-9
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 1
Query:   10 VTEVKGFDELNRNLKRL-NDRTKRSEILKLQRRLARPVVKAYRQQLPEDS------------------GTLKRSVAVKTVPSRKSGGNPVIAVRPGKSGRNDAFYKFMIVKKGTKLGSRARGSRKGKNNVVTQARNRTLGQIENGLVRTSEEEGAKYIQKQIDRLS 450
            + E++GF EL R LK L +D+TKR E+ K+  ++A   VK  +   P                     GT KRS+  KT+  R+S  NP++ V P  + + D +Y    V  GTK         K K+N       R   Q + G+ R SE+  AKYIQKQI++LS
Sbjct:    5 IVEIRGFRELQRKLKELGDDKTKRREVTKILGQVANSTVKVAKSLAPVSKKPHVQKRRNQVFGAVISPGTGKRSIGKKTM--RRSL-NPMVIVSPRSTKKADGWYLRQFVIGGTK---------KIKSNPFMD---RAYTQTKGGVARESEQRLAKYIQKQINKLS 155          
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1072.1 vs. uniprot
Match: A0A7L8AFD3_9FLAO (Uncharacterized protein n=1 Tax=Polaribacter haliotis TaxID=1888915 RepID=A0A7L8AFD3_9FLAO)

HSP 1 Score: 60.5 bits (145), Expect = 1.240e-8
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 1
Query:    1 NLKVTEVKGFDELNRNLKRLN-DRTKRSEILKLQRRLARPVVKAYRQQLPEDS------------------GTLKRSVAVKTVPSRKSGGNPVIAVRPGKSGRNDAFYKFMIVKKGTKLGSRARGSRKGKNNVVTQARNRTLGQIENGLVRTSEEEGAKYIQKQIDRLS 450
            N  + E++GF EL + LK L+ D+ K  E+LK+  ++A P VKA +   P                     GT KRS+  KT+   K   NP + V P  + R D +Y    V +GTK            N  + +A  +T GQ+     + +E + AKYIQ+QI++LS
Sbjct:    2 NSNLIEIEGFKELEKKLKSLSSDKVKSREVLKILGQVANPTVKAVKALTPIAKKPHIQKRKGQSFGTVITPGTGKRSIGKKTMRRAK---NPTLYVSPRSTKRADGWYLRQFVIRGTKYQKA--------NPFIDKAYQQTQGQV----TKDAETKVAKYIQRQIEKLS 155          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1165.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
S0A176_9CAUD2.280e-5358.94Structural protein n=1 Tax=Cellulophaga phage phi3... [more]
UPI000EF581332.620e-4550.00hypothetical protein n=1 Tax=Mesonia aquimarina Ta... [more]
UPI0015BC3EA28.020e-1535.06HK97 gp10 family phage protein n=1 Tax=Galbibacter... [more]
A0A1B9Y3I1_9FLAO1.180e-933.93Uncharacterized protein n=1 Tax=Tenacibaculum sole... [more]
UPI001EF3763D1.180e-932.14hypothetical protein n=1 Tax=Tenacibaculum sp. Mca... [more]
A0A2K8V8C9_9FLAO6.350e-934.34Uncharacterized protein n=1 Tax=Tenacibaculum sp. ... [more]
A0A7L8AFD3_9FLAO1.240e-831.95Uncharacterized protein n=1 Tax=Polaribacter halio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1165contigE-siliculosus-1a_F_contig1165:14972..15427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size456
Model size456
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927681.6381497-CDS-E-siliculosus-1a_F_contig1165:14971..154271622927681.6381497-CDS-E-siliculosus-1a_F_contig1165:14971..15427Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1165 14972..15427 -
1696318637.0389144-CDS-E-siliculosus-1a_F_contig1165:14971..154271696318637.0389144-CDS-E-siliculosus-1a_F_contig1165:14971..15427Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1165 14972..15427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1165.1072.1prot_E-siliculosus-1a_F_contig1165.1072.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1165 14972..15427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1165.1072.1

>prot_E-siliculosus-1a_F_contig1165.1072.1 ID=prot_E-siliculosus-1a_F_contig1165.1072.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1072.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp
NLKVTEVKGFDELNRNLKRLNDRTKRSEILKLQRRLARPVVKAYRQQLPE
DSGTLKRSVAVKTVPSRKSGGNPVIAVRPGKSGRNDAFYKFMIVKKGTKL
GSRARGSRKGKNNVVTQARNRTLGQIENGLVRTSEEEGAKYIQKQIDRLS
R*
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mRNA from alignment at E-siliculosus-1a_F_contig1165:14972..15427-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1165.1072.1 ID=mRNA_E-siliculosus-1a_F_contig1165.1072.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1072.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1165:14972..15427- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACCTAAAGGTAACAGAAGTAAAGGGGTTTGATGAATTGAACCGAAACTT AAAACGGTTGAACGACCGTACAAAACGTTCTGAAATATTGAAGTTGCAAC GCCGTTTGGCAAGACCTGTTGTAAAAGCATACCGCCAGCAATTACCTGAA GATTCGGGTACATTAAAAAGGTCTGTAGCGGTAAAAACGGTGCCAAGTCG TAAAAGTGGGGGTAACCCTGTTATTGCGGTTCGCCCTGGTAAAAGTGGGC GTAATGATGCCTTTTACAAGTTTATGATTGTAAAAAAAGGCACAAAGCTA GGTAGTAGGGCGCGTGGTAGTCGTAAAGGTAAAAATAACGTGGTGACCCA GGCACGTAACAGAACGCTGGGCCAGATTGAAAACGGATTAGTACGCACCT CAGAAGAAGAAGGCGCAAAGTACATACAAAAACAAATTGACAGGCTGAGC AGATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1165:14972..15427-

>mRNA_E-siliculosus-1a_F_contig1165.1072.1 ID=mRNA_E-siliculosus-1a_F_contig1165.1072.1|Name=mRNA_E-siliculosus-1a_F_contig1165.1072.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1165:14972..15427- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACCTAAAGGTAACAGAAGTAAAGGGGTTTGATGAATTGAACCGAAACTT
AAAACGGTTGAACGACCGTACAAAACGTTCTGAAATATTGAAGTTGCAAC
GCCGTTTGGCAAGACCTGTTGTAAAAGCATACCGCCAGCAATTACCTGAA
GATTCGGGTACATTAAAAAGGTCTGTAGCGGTAAAAACGGTGCCAAGTCG
TAAAAGTGGGGGTAACCCTGTTATTGCGGTTCGCCCTGGTAAAAGTGGGC
GTAATGATGCCTTTTACAAGTTTATGATTGTAAAAAAAGGCACAAAGCTA
GGTAGTAGGGCGCGTGGTAGTCGTAAAGGTAAAAATAACGTGGTGACCCA
GGCACGTAACAGAACGCTGGGCCAGATTGAAAACGGATTAGTACGCACCT
CAGAAGAAGAAGGCGCAAAGTACATACAAAAACAAATTGACAGGCTGAGC
AGATAAAACCTAAAGGTAACAGAAGTAAAGGGGTTTGATGAATTGAACCG
AAACTTAAAACGGTTGAACGACCGTACAAAACGTTCTGAAATATTGAAGT
TGCAACGCCGTTTGGCAAGACCTGTTGTAAAAGCATACCGCCAGCAATTA
CCTGAAGATTCGGGTACATTAAAAAGGTCTGTAGCGGTAAAAACGGTGCC
AAGTCGTAAAAGTGGGGGTAACCCTGTTATTGCGGTTCGCCCTGGTAAAA
GTGGGCGTAATGATGCCTTTTACAAGTTTATGATTGTAAAAAAAGGCACA
AAGCTAGGTAGTAGGGCGCGTGGTAGTCGTAAAGGTAAAAATAACGTGGT
GACCCAGGCACGTAACAGAACGCTGGGCCAGATTGAAAACGGATTAGTAC
GCACCTCAGAAGAAGAAGGCGCAAAGTACATACAAAAACAAATTGACAGG
CTGAGCAGATAA
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