mRNA_E-siliculosus-1a_F_contig11646.1068.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11646.1068.1
Unique NamemRNA_E-siliculosus-1a_F_contig11646.1068.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: D8LP24_ECTSI (Pyruvate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP24_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.100e-39
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQE 218
            LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQE
Sbjct:  165 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQE 236
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: A0A097IU54_9PHAE (Pyruvate kinase n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A097IU54_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 5.040e-36
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQ 215
            LVSIIR IE KYKHPIC+LADLQGPKLRVGTFEHDTV+LV+GQMFRFDMDDEPGDAARVKLPHKEIIDTLQ
Sbjct:  158 LVSIIRTIETKYKHPICVLADLQGPKLRVGTFEHDTVHLVDGQMFRFDMDDEPGDAARVKLPHKEIIDTLQ 228
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: A0A097IU45_9PHAE (Pyruvate kinase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IU45_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.350e-34
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQE 218
            LV+ IR IE KYKHPICILADLQGPKLRVG FEHDTVNLV+GQMFRFDMDDEPGD+ARVKLPHKEIIDTL+E
Sbjct:  155 LVTTIREIETKYKHPICILADLQGPKLRVGVFEHDTVNLVDGQMFRFDMDDEPGDSARVKLPHKEIIDTLRE 226
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: A0A097IU24_UNDPI (Pyruvate kinase n=2 Tax=Laminariales TaxID=2886 RepID=A0A097IU24_UNDPI)

HSP 1 Score: 128 bits (322), Expect = 4.140e-33
Identity = 62/72 (86.11%), Postives = 69/72 (95.83%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQE 218
            LV+IIR IEAK+KHPIC+LADLQGPKLRVG F+ DTVNLV+GQ+FRFDMDDEPGDAARVKLPHKEIIDTL+E
Sbjct:  151 LVTIIRDIEAKFKHPICVLADLQGPKLRVGVFDKDTVNLVDGQLFRFDMDDEPGDAARVKLPHKEIIDTLKE 222
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: A0A097IU52_9PHAE (Pyruvate kinase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097IU52_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.850e-32
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQE 218
            LV +IR IEAKYKHPICILADLQGPKLRVG F  D+V+LV+GQMFRFDMDDEPGDAARV+LPHKEIIDTLQE
Sbjct:  153 LVQVIREIEAKYKHPICILADLQGPKLRVGVFGKDSVHLVDGQMFRFDMDDEPGDAARVQLPHKEIIDTLQE 224
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: A0A097IU41_9PHAE (Pyruvate kinase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IU41_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.090e-32
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQE 218
            LV  IR +EAKYKHPICILADLQGPKLRVG FE D+VNLV+GQMFRFDMDDEPGDAARVKLPH+EII+TL+E
Sbjct:  140 LVKTIREVEAKYKHPICILADLQGPKLRVGVFEKDSVNLVDGQMFRFDMDDEPGDAARVKLPHEEIINTLRE 211
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: A0A836CA73_9STRA (Pyruvate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA73_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.750e-27
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTL 212
            LV +IR +E KY+HPIC+LADLQGPKLRV  FEHD V +V GQ FRFDM+DEPGDA RVKLPH EII+TL
Sbjct:  138 LVELIREVETKYRHPICVLADLQGPKLRVDVFEHDKVTVVQGQQFRFDMEDEPGDARRVKLPHPEIINTL 207
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: A0A097IU63_9PHAE (Pyruvate kinase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A097IU63_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.750e-26
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQE 218
            LV +IR +EAKYKHPICILADLQGPKLRVGTFE D V LV GQ FRFDMD+E GDA RV LPH EII TL E
Sbjct:  158 LVLLIREVEAKYKHPICILADLQGPKLRVGTFEKDKVTLVEGQTFRFDMDEELGDAGRVMLPHPEIIYTLSE 229
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: A0A097IU61_9PHAE (Pyruvate kinase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IU61_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.340e-26
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTL 212
            LV  IR +EAKYKHPICILADLQGPKLRVG F+ D V L +GQ+FRFDMDD PGD  RV+LPH+EIIDTL
Sbjct:  145 LVLTIRRVEAKYKHPICILADLQGPKLRVGVFQGDKVTLADGQLFRFDMDDTPGDDTRVQLPHREIIDTL 214
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BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Match: W7TRP2_9STRA (Pyruvate kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRP2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.890e-26
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 3 
Query:    3 LVSIIRVIEAKYKHPICILADLQGPKLRVGTFEHDTVNLVNGQMFRFDMDDEPGDAARVKLPHKEIIDTLQ 215
            L  IIR +E KY HPI ILADLQGPKLRVGTF+HD V LV+GQ FRFD+ DEPGDAARV LPH EII+TLQ
Sbjct:  117 LFDIIRGLEVKYNHPIAILADLQGPKLRVGTFDHDKVILVDGQAFRFDLSDEPGDAARVNLPHPEIINTLQ 187
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11646.1068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP24_ECTSI3.100e-39100.00Pyruvate kinase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A097IU54_9PHAE5.040e-3692.96Pyruvate kinase n=3 Tax=Phaeophyceae TaxID=2870 Re... [more]
A0A097IU45_9PHAE2.350e-3488.89Pyruvate kinase n=1 Tax=Punctaria latifolia TaxID=... [more]
A0A097IU24_UNDPI4.140e-3386.11Pyruvate kinase n=2 Tax=Laminariales TaxID=2886 Re... [more]
A0A097IU52_9PHAE2.850e-3286.11Pyruvate kinase n=1 Tax=Desmarestia viridis TaxID=... [more]
A0A097IU41_9PHAE5.090e-3284.72Pyruvate kinase n=5 Tax=Sargassum TaxID=3015 RepID... [more]
A0A836CA73_9STRA4.750e-2774.29Pyruvate kinase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A097IU63_9PHAE1.750e-2677.78Pyruvate kinase n=1 Tax=Ishige okamurae TaxID=2337... [more]
A0A097IU61_9PHAE2.340e-2675.71Pyruvate kinase n=1 Tax=Dictyopteris undulata TaxI... [more]
W7TRP2_9STRA2.890e-2676.06Pyruvate kinase n=2 Tax=Monodopsidaceae TaxID=4250... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11646contigE-siliculosus-1a_F_contig11646:378..1682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size114
Model size219
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11646.1068.1prot_E-siliculosus-1a_F_contig11646.1068.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11646 378..1578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927681.408834-CDS-E-siliculosus-1a_F_contig11646:377..4871622927681.408834-CDS-E-siliculosus-1a_F_contig11646:377..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11646 378..487 +
1696318636.9581568-CDS-E-siliculosus-1a_F_contig11646:377..4871696318636.9581568-CDS-E-siliculosus-1a_F_contig11646:377..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11646 378..487 +
1622927681.4256384-CDS-E-siliculosus-1a_F_contig11646:1574..15781622927681.4256384-CDS-E-siliculosus-1a_F_contig11646:1574..1578Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11646 1575..1578 +
1696318636.9664164-CDS-E-siliculosus-1a_F_contig11646:1574..15781696318636.9664164-CDS-E-siliculosus-1a_F_contig11646:1574..1578Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11646 1575..1578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927681.4391367-UTR-E-siliculosus-1a_F_contig11646:1578..16821622927681.4391367-UTR-E-siliculosus-1a_F_contig11646:1578..1682Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11646 1579..1682 +
1696318636.9807074-UTR-E-siliculosus-1a_F_contig11646:1578..16821696318636.9807074-UTR-E-siliculosus-1a_F_contig11646:1578..1682Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11646 1579..1682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11646.1068.1

>prot_E-siliculosus-1a_F_contig11646.1068.1 ID=prot_E-siliculosus-1a_F_contig11646.1068.1|Name=mRNA_E-siliculosus-1a_F_contig11646.1068.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=38bp
SWCPSSGSSRRSISTPSASSRTSRGPSSASGHSNTIR*
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mRNA from alignment at E-siliculosus-1a_F_contig11646:378..1682+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11646.1068.1 ID=mRNA_E-siliculosus-1a_F_contig11646.1068.1|Name=mRNA_E-siliculosus-1a_F_contig11646.1068.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1305bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11646:378..1682+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGTTGGTGTCCATCATCCGGGTCATCGAGGCGAAGTATAAGCACCCCATC
TGCATCCTCGCGGACCTCCAGGGGCCCAAGCTCCGCGTCGGGACATTCGA
ACACGATACGGTAAATACGTCCACGTACCAAGGCCGTTCTGTATTTGAGT
TAGCTCGTGATTCATCTTTCACGTATCTGCGGCGGCCGCAATGGTAAAGT
ATCATATTGCTGTAAGTAAATGGATAATCTTATATACCAACAGGGTCTGA
AACGACATACCACATTTCTGATGCAAGGTATTGGCACGAAACCGTACTTG
GGGAATGAGGGAAATGGTGTCAACCGTGCTGTTCACCGACAGATTAGCAG
TAGCGGTAGTATAGCATCTTCTTGATTAGAGCATTGACCACGAGTAGGGC
GGAGCTTGTTAGAGCATTGACCACGAGTAGGGCGGAGCATTGTTCAAACA
GGACCGAGTACCGATGGCCAATCGTTCCTTCCTACTTTGCCAAAGCTGGC
TCAATAATGTCTTCCCTAGCCTATCTATCCTATCGATATCACTTCCCGTC
TGTTAAACCCACTCTCTATGTCCTAGTACAGCTACCGTCTTCTCCTGGCT
ATTCCATGTTTCAATCATCTCCCTCTATCTTGTTCTTTTCCCATATACAC
TTCCCTCTCCTTCTTGTACAACGGGCATTCCGCAACAACATGAACCCGGC
CTTCGCACTAGGAGCGCATTCACGTTTGACCTTGTCTTCGTCGTCTACCT
TCCTAAATCTTGGTCTACGTTCTCGAAGGCCAAGATTGGATCCCCAGTTC
TGCCCTGACGGCTCCATTGCTTGTGCACTTGGAGCATCCTAGGATGGTTT
TCGTGACTTTCATCTGCGTCGCCTCGAGCTCTTTGACCACCTTCTTATTT
ACTTCCCGCTCTTCTCCGGCGTACTCTTGAGAGGATGGGGGGAGCTTTTG
CGGTGGTTCAAACCCGCCCGAAGCCGTCTCTTTTTTCCTCCACTCGTAAA
ACCGACTAATCCAACACACCACTTTTGGACAAAGTGGAGAACTCGCCACC
CATCCATATTATCATATTATCCCCCCCGTCTTACACACACGCACACAAAC
ACAAGAAATGTCCACCTCGGTCTAAATATATTGCATGCACGGACGCGCCG
CTTCGCACCCCCTTTTTTGTGCGATGATGACGCTACTATCTGCATAGGTG
AACCTGGTGAACGGCCAGATGTTCCGGTTCGACATGGACGACGAGCCCGG
AGACGCTGCCCGCGTCAAGCTCCCCCACAAGGAAATCATCGACACCCTCC
AGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11646:378..1682+

>mRNA_E-siliculosus-1a_F_contig11646.1068.1 ID=mRNA_E-siliculosus-1a_F_contig11646.1068.1|Name=mRNA_E-siliculosus-1a_F_contig11646.1068.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11646:378..1682+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGTTGGTGTCCATCATCCGGGTCATCGAGGCGAAGTATAAGCACCCCATC
TGCATCCTCGCGGACCTCCAGGGGCCCAAGCTCCGCGTCGGGACATTCGA
ACACGATACGAGTTGGTGTCCATCATCCGGGTCATCGAGGCGAAGTATAA
GCACCCCATCTGCATCCTCGCGGACCTCCAGGGGCCCAAGCTCCGCGTCG
GGACATTCGAACACGATACGGTGAGTGA
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