mRNA_E-siliculosus-1a_F_contig1164.1063.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A6H5JL00_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL00_9PHAE) HSP 1 Score: 736 bits (1900), Expect = 3.040e-235 Identity = 565/642 (88.01%), Postives = 569/642 (88.63%), Query Frame = 2
Query: 5 DGLGFFGGALTNLLVGNWRLDDDELVGARGTGTPPRRRGWGTTXXXXRASLQGENGXXXXXXXXXXXXG-PFSWLNPGVSPGTGPGARVVAGGASPSREPAGGGFTLASFPLSPFRRD-DXXXXXXXXXXXPXHSXXXSAPDPSMEGVGGRIRASPPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARQEAGVETAVVAEDDAAVLERLDDAWAAVPLGSKRRCLENVLLAIAARFPAVGYCQGMDRLLIMLMMLYFVSPEDTNTAVGPAAVAPKLTTRTVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPSPASVNLDPPPTPTASAGTAADTVVGGKGTDAAATASDPAGVRGSENAPPTQXXXXXXXAVLAPSSXXXXXXXRPAARGGATLLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFE---VFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQVRQREKLEVPSVTQLMLRPVL 1915
DGLGFFGGALTNLLVGNWR DDDELVGARGTGTPPRR XXXX ASLQGE XXXXXXXXXXXX PFSWLNPGVSPGTGPGARV AGGASPSREPAGGGFTLASFPLSPFRRD D P HS SAPDPS +GVG RIRASPPRS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ARQEAGVETAV AEDDAAVLERLDDAWAAVP+GSKRRCLENVLLAIAARFPAVGYCQGMDRLLIMLMMLYFV PEDTNTAVGPAAVAPKLT RTV+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPSPASVNLDPPPTPTASAG ADTVVGG GTD A TA+D AGVR XXXXXXX VLAPS XXXXXXX AARG A LLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFD IDFSIDMVAMGWFQTLFVYLHAMPR TVRRIWDWWLSSGDFE VFFRVSMALLELSEEHLLALD D TVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQVRQREKLEVPSVTQLMLRPVL
Sbjct: 1868 DGLGFFGGALTNLLVGNWRHDDDELVGARGTGTPPRRXXXXXXXXXXXASLQGEXXXXXXXXXXXXXXXXPFSWLNPGVSPGTGPGARVAAGGASPSREPAGGGFTLASFPLSPFRRDNDGGGGKGAARRLPPHSPAPSAPDPSSDGVGARIRASPPRSSRRMTIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ARQEAGVETAVAAEDDAAVLERLDDAWAAVPVGSKRRCLENVLLAIAARFPAVGYCQGMDRLLIMLMMLYFVPPEDTNTAVGPAAVAPKLTARTVQAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPSPASVNLDPPPTPTASAGIPADTVVGGTGTDVA-TAADAAGVRXXXXX--XXXXXXXXXXVLAPSXXXXXXXXXXAARGRAMLLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDSIDFSIDMVAMGWFQTLFVYLHAMPRTTVRRIWDWWLSSGDFEASTVFFRVSMALLELSEEHLLALDVDGTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQVRQREKLEVPSVTQLMLRPVL 2505
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: D7G646_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G646_ECTSI) HSP 1 Score: 623 bits (1607), Expect = 4.900e-195 Identity = 524/638 (82.13%), Postives = 526/638 (82.45%), Query Frame = 2
Query: 5 DGLGFFGGALTNLLVGNWRLDDDELVGARGTGTPPRRRGWGTTXXXXRASLQGENGXXXXXXXXXXXXG-PFSWLNPGVSPGTGPGARVVAGGASPSREPAGGGFTLASFPLSPFRRDDXXXXXXXXXXXPXHSXXXSAPDPSMEGVGGRIRASPPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARQEAGVETAVVAEDDAAVLERLDDAWAAVPLGSKRRCLENVLLAIAARFPAVGYCQGMDRLLIMLMMLYFVSPEDTNTAVGPAAVAPKLTTRTVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPSPASVNLDPPPTPTASAGTAADTVVGGKGTDAAATASDPAGVRGSENAPPTQXXXXXXXAVLAPSSXXXXXXXRPAARGGATLLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQVRQREKLEVPSVTQLMLRPVL 1915
DGLGFFGGALTNLLVGNWRLDDDELVGARGTGTPPRRRGWG XXXX XXXXXXXXXXXX PFSWLNPGVSPGTGPGARV AGGASPSREPAGGGFTLASFPLSPFRRD XXXXXXXXXXX X XXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX ARQEAGVE AVVAEDDAAVLERLDDAWAAVP+ SKRRCLENVL AIAARFPAVGYCQGMDRLLIMLMMLYFVSPEDTNTAVGPAAVAPKLTTRT E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PS ASVNL ASAG A DTVVGGKGTD A TA+D AGVR XXXXXXX VLAPSSXXXXXXX AARGGATLLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSG RLPALAAHFD IDFSIDMVAMGWFQTLFVYLHAMPRATV FFRVSMALLELSEEHLLALDFD TVEYFNNFPE SVLSPDVLLPAAAAVEVEDGELMYLELQVRQREKLEVPSVTQLMLRPVL
Sbjct: 1611 DGLGFFGGALTNLLVGNWRLDDDELVGARGTGTPPRRRGWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFSWLNPGVSPGTGPGARVAAGGASPSREPAGGGFTLASFPLSPFRRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTAGRRGWSPTVVPVISXXXXXXXXXXXXXXXXXXTTIPARQEAGVEKAVVAEDDAAVLERLDDAWAAVPVESKRRCLENVLRAIAARFPAVGYCQGMDRLLIMLMMLYFVSPEDTNTAVGPAAVAPKLTTRTAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PSXASVNLXXXXXXXASAGNAPDTVVGGKGTDVA-TAADAAGVRXXXXXXXXXXXXXXXXXVLAPSSXXXXXXXXXAARGGATLLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGSRLPALAAHFDSIDFSIDMVAMGWFQTLFVYLHAMPRATV---------------FFRVSMALLELSEEHLLALDFDGTVEYFNNFPELSVLSPDVLLPAAAAVEVEDGELMYLELQVRQREKLEVPSVTQLMLRPVL 2229
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A835Z6L5_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6L5_9STRA) HSP 1 Score: 149 bits (376), Expect = 8.280e-33 Identity = 75/181 (41.44%), Postives = 108/181 (59.67%), Query Frame = 2
Query: 1367 GATLLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQVRQREKLEVPSVTQLMLRP 1909
G G +Y +++ LFE +RL +LY + G+ VC EV L +LPALAAH +DFS+D+V GWFQTL + +P AT R++DWWL+SG+ VFFR +ALLEL+E+ LL +FD + FP+ + ++ AA A+ + ELM +E VR + +V QL+LRP
Sbjct: 2045 GGARAGRPIYELYASLFEAYRLKELYAVETAGIMVCVEVFLHLMAVKLPALAAHLADLDFSLDLVVFGWFQTLLCAV-PLPHATRARVFDWWLTSGELSVFFRAGLALLELNEDALLCREFDGVAHFLATFPDADGVDAMRVMRAAHALPLPAAELMMIEEAVRHVRRDQVALPQQLLLRP 2224
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A7R9ZRK5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRK5_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.660e-28 Identity = 61/160 (38.12%), Postives = 95/160 (59.38%), Query Frame = 2
Query: 1376 LLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQV 1855
+L E V+ V F + L +Y P+ + +C V L +LP LA HF+ + ++ + A+GWFQTLF+YL +MP ATV +WD WL F++FFRV A+L LS+ LL + + + Y N FP+ ++L+PD+L+ A ++V + L LE +V
Sbjct: 58 VLEETVFRVMDTFFTTYNLRHMYWPELRCLKICCRVFERLIQIKLPVLADHFEHHELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPILLNHELEGMMTYLNTFPDATLLNPDILIACALNIKVTNSMLAELESEV 217
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A7S2U8X4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8X4_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.750e-28 Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 2
Query: 1385 ERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQV 1855
E V+ V + L +Y P+ + C V L R+LP LA HF+ + ++ + A+GWFQTLF+YL +MP ATV +WD WL F++FFRV A+L LS+ LL D + + Y N FP+ ++L+PD+L+ A ++V + L+ +E++V
Sbjct: 181 ETVFRVMDAFMSRYNLRHMYWPELRCLKTCCRVFECLIQRKLPVLADHFEHHELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPILLNHDLEGMMTYLNTFPDATLLNPDILIACALQIKVTNKMLLEMEMEV 337
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A7S1FQF6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQF6_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.170e-26 Identity = 58/162 (35.80%), Postives = 96/162 (59.26%), Query Frame = 2
Query: 1373 TLLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQVR 1858
T L E V+ + F + + ++ P + +C + L +LP LA HF+ D ++ + A+GWFQTLF+Y+ +MP ATV +WD W+ F++FFRV A+L LS+ LL D + + Y N FP+ ++L+PD+L+P A ++V + L LE++ +
Sbjct: 286 TFLEETVFNLMDTFFVRYNVRHMFWPGLDCLKLCCRMFERLIALKLPVLADHFEHHDLNVGLFALGWFQTLFLYIPSMPSATVCHMWDIWIVERSFKIFFRVGTAILYLSQPILLNNDLEGMMIYLNTFPDATLLNPDILIPCALQIKVTNSMLTELEIECK 447
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A7S2EQW5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQW5_TRICV) HSP 1 Score: 120 bits (302), Expect = 6.010e-26 Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 2
Query: 1358 ARGGATLLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQV 1855
AR + ++ E V+ V + L +Y P+ + C V + +LP LA HFD + ++ + A+GWFQTLF+YL +MP ATV +WD WL F++FFRV A+L LS+ LL + + + Y N FP+ ++L+P++L+ A +++ + L +E++V
Sbjct: 170 ARNHSLIVEETVFRVMDSFLTTYSLKHMYWPELRCLKTCCRVFERIIQLKLPVLADHFDHHELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPVLLNHELEGMMTYLNTFPDATLLNPEILIACALQIKITNRMLTDIEMEV 335
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A6U3UDH6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UDH6_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.160e-25 Identity = 59/159 (37.11%), Postives = 96/159 (60.38%), Query Frame = 2
Query: 1376 LLGERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQ 1852
++ E V+ V F + L +Y P+ + C V +L ++LP LA HF+ D ++ + A+GWFQTLF+YL +MP ATV +WD WL F++FFRV A+L LS+ LL D + + Y N FP+ ++L D+L+P A +++ + L+ +E++
Sbjct: 1040 IVEEVVFRVMDTFFTTYSLQHMYWPELRCLKTCCRVFEILIRQKLPVLADHFEHHDLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPTLLNHDLEGMMTYLNTFPDATLLRADILIPCALQIKITNKMLVEIEME 1198
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A7S1D5P5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5P5_CYCTE) HSP 1 Score: 118 bits (295), Expect = 1.290e-25 Identity = 57/154 (37.01%), Postives = 89/154 (57.79%), Query Frame = 2
Query: 1385 ERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLE 1846
E V+ V + L +Y P+ + C V + +LP LA HFD + ++ + A+GWFQTLF+YL +MP ATV +WD WL F++FFRV A+L LS+ LL D + + Y N FP+ ++L+PD+L+ A +++ + L +E
Sbjct: 115 EAVFRVMDCFLTTYNLRHMYWPELRCLKTCCRVFERIIQLKLPVLADHFDHHELNVGLFALGWFQTLFLYLPSMPSATVCHLWDIWLVERSFKIFFRVGTAILFLSQPILLNHDLEGMMTYLNTFPDATLLNPDILIACALQIKITNKMLEDIE 268
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Match: A0A1Z5JKH4_FISSO (Rab-GAP TBC domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKH4_FISSO) HSP 1 Score: 124 bits (310), Expect = 5.120e-25 Identity = 61/157 (38.85%), Postives = 92/157 (58.60%), Query Frame = 2
Query: 1385 ERVYAVFSGLFEGFRLHDLYVPDRGGVFVCTEVLTLLSGRRLPALAAHFDGIDFSIDMVAMGWFQTLFVYLHAMPRATVRRIWDWWLSSGDFEVFFRVSMALLELSEEHLLALDFDLTVEYFNNFPEPSVLSPDVLLPAAAAVEVEDGELMYLELQV 1855
E ++ V F + L Y P+ + C V L +LP LA HF+ + ++ + A+GWFQTLF+YL +MP ATV +WD WL F++FFRV A+L LS+ LL + + + Y N FP+ ++LSPD+L+ A ++V + LM LE +V
Sbjct: 1274 ETLFHVMESFFGTYNLRHFYYPELRCLKTCCRVFERLIQLKLPVLADHFEHHELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPILLNHELEGMMSYLNTFPDATLLSPDILIACALQIKVTNKLLMELEREV 1430 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1164.1063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1164.1063.1 >prot_E-siliculosus-1a_F_contig1164.1063.1 ID=prot_E-siliculosus-1a_F_contig1164.1063.1|Name=mRNA_E-siliculosus-1a_F_contig1164.1063.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=496bp MEGVGGRIRASPPRSSRRMTIGGGSDGGDGSSGGGLTPRRQTEKTAGRRGback to top mRNA from alignment at E-siliculosus-1a_F_contig1164:1087..7411+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1164.1063.1 ID=mRNA_E-siliculosus-1a_F_contig1164.1063.1|Name=mRNA_E-siliculosus-1a_F_contig1164.1063.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6325bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1164:1087..7411+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1164:1087..7411+ >mRNA_E-siliculosus-1a_F_contig1164.1063.1 ID=mRNA_E-siliculosus-1a_F_contig1164.1063.1|Name=mRNA_E-siliculosus-1a_F_contig1164.1063.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2976bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1164:1087..7411+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |