mRNA_E-siliculosus-1a_F_contig11603.1052.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11603.1052.1
Unique NamemRNA_E-siliculosus-1a_F_contig11603.1052.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11603.1052.1 vs. uniprot
Match: D7G0U2_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.090e-35
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:   34 MPSMLGMLQNAQDQAASPPVSPRNSRCPGGGSLVVGKGDDESSAAAAISDGDSTGGNDLAGHKRTSRRVGLVGFGG 261
            MPSMLGMLQNAQDQAASPPVSPRNSRCPGGGSL VGKGD ESSAAAAISDGDSTGGNDLAGHK TSRR+GLVG GG
Sbjct:    1 MPSMLGMLQNAQDQAASPPVSPRNSRCPGGGSLFVGKGDGESSAAAAISDGDSTGGNDLAGHKHTSRRMGLVGLGG 76
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11603.1052.1 vs. uniprot
Match: A0A6H5KPV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV3_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.290e-23
Identity = 59/87 (67.82%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 TPPNSRPRVRKMPSMLGMLQNAQDQAASPPVSPRNSRCPGGGSLVVGKGDDESSAAAAISDGDSTGGNDLAGHKRTSRRVGLVGFGG 261
            TPPNSRPRVRKMPSMLGMLQNAQDQAASPP                  GD ESSA AAISDG +TGGNDLAGH+ TSRR+G+V  GG
Sbjct:   65 TPPNSRPRVRKMPSMLGMLQNAQDQAASPP------------------GDGESSATAAISDGGATGGNDLAGHQLTSRRIGVVDLGG 133
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11603.1052.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 5.930e-20
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 TPPNSRPRVRKMPSMLGMLQNAQDQAASPPVS-PRNSRCPGGGSLVVGKGDDESSAAAAISDGDSTGGNDLAGHKRTSRRVGL 246
            T PNSRPR RKMPSMLGMLQNAQDQAASP  +   NS     GSLVVG GD+ESSAAAA +D  +T GND AG KRTSRR+ +
Sbjct:  101 TTPNSRPRNRKMPSMLGMLQNAQDQAASPVSALSSNSHYLSDGSLVVGAGDNESSAAAATADRGATAGNDPAGPKRTSRRMNM 183
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11603.1052.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.480e-9
Identity = 43/78 (55.13%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:    1 TPPNSRPRVRKMPSMLGMLQNAQDQAASPPVS-PRNSRCPGGGSLVVGKGDDESSAAAAISDGDSTGGNDLAGHKRTS 231
            T PNSRPR RKMPSMLGMLQNAQDQAASP  +   NS      SLVVG             D  +T GND AG + TS
Sbjct:  237 TTPNSRPRNRKMPSMLGMLQNAQDQAASPVSTLSSNSHFLSDSSLVVGAXXXXXXXXXXXXDRGATAGNDPAGPRSTS 314
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11603.1052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0U2_ECTSI6.090e-3593.42Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KPV3_9PHAE3.290e-2367.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN2_ECTSI5.930e-2068.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRH3_9PHAE7.480e-955.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11603contigE-siliculosus-1a_F_contig11603:992..1252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size261
Model size263
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsKOG4569@1,KOG4569@2759
EggNOG free text desc.phospholipase A1 activity
Seed eggNOG ortholog2880.D8LEN2
Seed ortholog evalue9.9e-18
Seed ortholog score95.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927676.1222432-CDS-E-siliculosus-1a_F_contig11603:991..12521622927676.1222432-CDS-E-siliculosus-1a_F_contig11603:991..1252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11603 992..1252 +
1696318635.8753273-CDS-E-siliculosus-1a_F_contig11603:991..12521696318635.8753273-CDS-E-siliculosus-1a_F_contig11603:991..1252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11603 992..1252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11603.1052.1prot_E-siliculosus-1a_F_contig11603.1052.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11603 992..1252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11603.1052.1

>prot_E-siliculosus-1a_F_contig11603.1052.1 ID=prot_E-siliculosus-1a_F_contig11603.1052.1|Name=mRNA_E-siliculosus-1a_F_contig11603.1052.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=87bp
TPPNSRPRVRKMPSMLGMLQNAQDQAASPPVSPRNSRCPGGGSLVVGKGD
DESSAAAAISDGDSTGGNDLAGHKRTSRRVGLVGFGG
back to top

mRNA from alignment at E-siliculosus-1a_F_contig11603:992..1252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11603.1052.1 ID=mRNA_E-siliculosus-1a_F_contig11603.1052.1|Name=mRNA_E-siliculosus-1a_F_contig11603.1052.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=261bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11603:992..1252+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACACCGCCGAATTCCCGACCCCGAGTCCGCAAGATGCCCTCTATGCTCGG
CATGCTGCAGAACGCGCAGGACCAGGCGGCCTCACCACCGGTATCTCCCC
GAAACTCCCGTTGTCCCGGCGGCGGCAGCCTTGTTGTGGGGAAGGGTGAT
GACGAGTCTTCCGCCGCTGCTGCGATCTCTGATGGAGATTCCACTGGTGG
GAACGATCTAGCTGGTCATAAGCGCACCTCAAGGCGCGTGGGCTTGGTGG
GCTTTGGCGGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11603:992..1252+

>mRNA_E-siliculosus-1a_F_contig11603.1052.1 ID=mRNA_E-siliculosus-1a_F_contig11603.1052.1|Name=mRNA_E-siliculosus-1a_F_contig11603.1052.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11603:992..1252+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACACCGCCGAATTCCCGACCCCGAGTCCGCAAGATGCCCTCTATGCTCGG
CATGCTGCAGAACGCGCAGGACCAGGCGGCCTCACCACCGGTATCTCCCC
GAAACTCCCGTTGTCCCGGCGGCGGCAGCCTTGTTGTGGGGAAGGGTGAT
GACGAGTCTTCCGCCGCTGCTGCGATCTCTGATGGAGATTCCACTGGTGG
GAACGATCTAGCTGGTCATAAGCGCACCTCAAGGCGCGTGGGCTTGGTGG
GCTTTGGCGGGACACCGCCGAATTCCCGACCCCGAGTCCGCAAGATGCCC
TCTATGCTCGGCATGCTGCAGAACGCGCAGGACCAGGCGGCCTCACCACC
GGTATCTCCCCGAAACTCCCGTTGTCCCGGCGGCGGCAGCCTTGTTGTGG
GGAAGGGTGATGACGAGTCTTCCGCCGCTGCTGCGATCTCTGATGGAGAT
TCCACTGGTGGGAACGATCTAGCTGGTCATAAGCGCACCTCAAGGCGCGT
GGGCTTGGTGGGCTTTGGCGGG
back to top