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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig116.1045.1 vs. uniprot
Match: D7FVC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC5_ECTSI) HSP 1 Score: 775 bits (2001), Expect = 6.330e-280 Identity = 401/425 (94.35%), Postives = 406/425 (95.53%), Query Frame = 2
Query: 44 FGCRRGAAVRWGGNSNNTLGQTRWTTSTEMASQAPEHKQWHSNVGLDEFVGHVLKFKSLVDSTQTRELGTVDKEQLKKMMGWGLFIEQVIGGLNTDSQRDSLTRALGLSHRAILPRLYQARRWVLRSMLGSTFLADHPRPESLLMWIMACYEELPPPQAHQDAGGETDQPGSFVDDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAGDGGKSTRVPCLYEMSVDTAQKRAYASNCFTFLSSRCAQDDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQVTCTAKHQAEDAACDSQ-ESLGTSLNGALLKQASALVEGFLDDARLWSLNEWLLGEISHRYESFARAYVEKLTRSREELVRREYLTSADSSVLCLRKEDVQSRLGVLCSRSERLKRLVFRTITLN 1315
FGCRRGAAVRWGGNSN TLGQTRWTTS EMASQAPEHKQWHSNVGLDEFVGHVL FKSLVDSTQTRELGTVDKEQLKKMMGWGLFIEQV+GGLNTDSQRDSL RALGLSHRAILPRLYQARRWVLRSMLGSTFL DHPRPESL+MWIMACYEELPP QAHQDAGGETDQ SFVDDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAG GGKSTRVPCLYEMSVDTAQKRAYASNCFTFLSSRCAQ DGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQ T TAKHQAED+ACDSQ ESLGTSLNGALLKQ VEGFLDDARLWSL+EWLLGEISHR+ESFARAYVEKLTRSREELVRREYLTSADSS LCLRKEDVQSRLGVLCSRSERLKRLVFRTI LN
Sbjct: 26 FGCRRGAAVRWGGNSNKTLGQTRWTTSPEMASQAPEHKQWHSNVGLDEFVGHVLTFKSLVDSTQTRELGTVDKEQLKKMMGWGLFIEQVVGGLNTDSQRDSLARALGLSHRAILPRLYQARRWVLRSMLGSTFLVDHPRPESLVMWIMACYEELPPLQAHQDAGGETDQSASFVDDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAGGGGKSTRVPCLYEMSVDTAQKRAYASNCFTFLSSRCAQGDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQATRTAKHQAEDSACDSQQESLGTSLNGALLKQ----VEGFLDDARLWSLDEWLLGEISHRHESFARAYVEKLTRSREELVRREYLTSADSSGLCLRKEDVQSRLGVLCSRSERLKRLVFRTIALN 446
BLAST of mRNA_E-siliculosus-1a_F_contig116.1045.1 vs. uniprot
Match: A0A6H5K2R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R8_9PHAE) HSP 1 Score: 705 bits (1820), Expect = 2.780e-252 Identity = 372/435 (85.52%), Postives = 383/435 (88.05%), Query Frame = 2
Query: 110 RWTTSTEMASQAPEHKQWHSNVGLDEFVGHVLKFKSLVDSTQTRELGTVDKEQLKKMMGWGLFIEQ--------------------------------VIGGLNTDSQRDSLTRALGLSHRAILPRLYQARRWVLRSMLGSTFLADHPRPESLLMWIMACYEELPPPQAHQDAGGETDQPGSFVDDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAGDGGKSTRVPCLYEMSVDTAQKRAYASNCFTFLSSRCAQDDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQVTCTAKHQAEDAACDSQ-ESLGTSLNGALLKQASALVEGFLDDARLWSLNEWLLGEISHRYESFARAYVEKLTRSREELVRREYLTSADSSVLCLRKEDVQSRLGVLCSRSERLKRLVFRTITLN 1315
RWTTS EMASQAPE KQWHS+VGLDEFVGHVLKFKSLVDSTQTRELGTVDKEQL K+MGWG+FIEQ V+GGLNTDSQRDSL +ALGLSHRAILPRLYQARRWVLRSMLGSTFLADHP PESLLMW+MACYEELPP QAHQDAGGETDQP SFV+DASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAGDGGKST VPCLYEMSVDTAQKRAYASNCFTFLSSRCAQDDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQ TCTAKHQAE +ACDSQ ESLGTSLN A+LKQASALVEGFL DARLWSL+EWLLGEISHRYESFARAYVEKLTRSREELVRRE LT AD + LC RKEDVQSRLGVLCSRSERLKRLVFRTI N
Sbjct: 18 RWTTSPEMASQAPEQKQWHSSVGLDEFVGHVLKFKSLVDSTQTRELGTVDKEQLDKIMGWGIFIEQEDRKRLKNKRGTIGASSSFPYSYSYRRLAFVQVVGGLNTDSQRDSLAQALGLSHRAILPRLYQARRWVLRSMLGSTFLADHPHPESLLMWVMACYEELPPLQAHQDAGGETDQPASFVNDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAGDGGKSTSVPCLYEMSVDTAQKRAYASNCFTFLSSRCAQDDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQATCTAKHQAEGSACDSQQESLGTSLNAAVLKQASALVEGFLGDARLWSLDEWLLGEISHRYESFARAYVEKLTRSREELVRRECLTPADWTGLCSRKEDVQSRLGVLCSRSERLKRLVFRTIASN 452
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1188 |
| Model size | 1554 |
| Exons | 6 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog | Ec-14_000590.1 |
| Ec32 ortholog description | expressed unknown protein |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig116.1045.1 >prot_E-siliculosus-1a_F_contig116.1045.1 ID=prot_E-siliculosus-1a_F_contig116.1045.1|Name=mRNA_E-siliculosus-1a_F_contig116.1045.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=396bp
MASQAPEHKQWHSNVGLDEFVGHVLKFKSLVDSTQTRELGTVDKEQLKKM
MGWGLFIEQVIGGLNTDSQRDSLTRALGLSHRAILPRLYQARRWVLRSML
GSTFLADHPRPESLLMWIMACYEELPPPQAHQDAGGETDQPGSFVDDASA
VVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAGDGGKSTRVPCLY
EMSVDTAQKRAYASNCFTFLSSRCAQDDGQHKHGVLAEQVTSFILELSEL
AQTDIVSLEILCLVLLEPWRQVTCTAKHQAEDAACDSQESLGTSLNGALL
KQASALVEGFLDDARLWSLNEWLLGEISHRYESFARAYVEKLTRSREELV
RREYLTSADSSVLCLRKEDVQSRLGVLCSRSERLKRLVFRTITLN* back to topmRNA from alignment at E-siliculosus-1a_F_contig116:57516..61558- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig116.1045.1 ID=mRNA_E-siliculosus-1a_F_contig116.1045.1|Name=mRNA_E-siliculosus-1a_F_contig116.1045.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4043bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig116:57516..61558- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGAGGAAGGAGCAGCAGTACATCGACGGATGTGAAGTAGTTGCTTTGGGT
GTCGCCGCGGTGCTGCAGTGCGGTGGGGAGGCAACTCGAACAACACATTG
GGTCAGACGAGGTGACGTGGTCTAGTGGGTCGGTGCATGTGTTGATCTAG
TCACGTCTGCCACCCCGGCTAGTCGACGTTAGTGTTATGTGCATACATTG
CGCAAGTGTATAATGCGCATACAGCGGTTACCCTGTAGGGGTGGTCAACA
AGACATACTGTACATGCACGCACCCTTCTACTGACTCGTCTTGATGTCAG
TCCACAGGGTCAAAGACTATTGCGCCGAGGAAGTTGGCAATGCAAAGCAC
GTTGCCATGGAACGTTCGAATATTTACAGCTGCTGTTGTATAGGCACACA
ATGAGTGCCCCCCCCGCTAACACGCCGCTGTAGCATGGTAGCATACAAGC
TCCATCAATAATTTTTGTTTGAAAAATCACCCTAGAGGTTGGGTATCCTA
TGCATATAGTATCTACACGATAGTCTATGTAGCTGTCAAGGGCGTCCGGC
GTCCGGAATACTGCGGTCCAACCATCGCAAGTTTTTTATTCCGTTCGACC
CGGCGTGTTGTGAGCATACAGCACCAGCTCACCAGCCCAACCACAGGGTA
CATTTGACGTGCATGACCAATTGGTCCGTGTGCGCACACCACCCCAGACA
ACCGACGTTCTCCAAAGGTGAACGGTCGGGTCTTGATGTTGTCATCCAAT
GTTCCGTTACTACTGCTGTACAACGATGATAAATCTACCAATGTACCGAC
TTTCGCGCAAGTCTGGTGCCCAAAATCGAACAAACACGACGCAGCCAGAG
CGGAAGAGGGAATCAATCTCGCCGCATCAGCACCACCGAGGCACTGAGAG
ACTTTTCCTGGGGAAACGCCAATGCCCATCCTCATGTCCGGGAAAAACAT
GGCTGTGCGGAGGTGGCAGCTGACAGCTAAGCCATGACAAGACGAACCTG
ATGCAGCGGCAGCTTGGGCGGCGCCTTGTTGTGTGACTGAAATCTGGAAA
ATTAGTTGCTGCAGTGCCTGAGAAGAGTCAACGGTTGCATCCACATTCCA
TATCACCAAGGTCGGGTTGGGGTGGCGGGAGCAGGTAGAGCTTCTCGCCT
GCTCCGCCTTTGGCGACACTAGTGCTGCTACTGACTCAGGGATAGCTCAT
GACACGGATGTTGCTGGCCTTACGCTGTCGTGTATGTCTGTGTGTCTTAT
TATTTTCATCGACCGGGCTAACCGGCTAACCAATGAAAAGACGTCAGTCT
CAGTGCGGTTGAAAACACAAAACCCTCTAGATGCCATTTACTAGGACCCC
GTGAGGGGGCAGCATGGGGGAGGCTAAGTTATTCTCCGGATGAAAGACAG
AAACGGTAGCAACAGAAGGAGTGTTTACCAAGGCTGCTACCTTGCACTCG
AGCTCGTTTTGGAGTGCTTTCACCATCCTTATCCTTGCTTTCACCACCAT
CGCTCTCATCATCATTTTTTCAGGCAGTTCTTCTCAAGCCCTGTGTCGTT
TGTTGTGGGGAAGGTCATCTGGCTAGACGCTTTTGCTCTCTTCCACTCCA
TGATTCCCTCCTCGATTGCTGTGACAAACAAGCAATTCCGACCTCGAGTT
CAACAGTCTCCTTGCAACCGCCAATCCCACTCAAAGGCGAATATCAAAGT
GAATCTTTATGCACTTTCACCCCCGGGGGGTTCGTGCTTGCCGATGTTTT
ATAACTCCCGCTGGACGCCTCTTGATGCAACATCACGTTGTGATAGGTGG
ACAACGTCGACGGAGATGGCTTCCCAGGCGCCGGAGCACAAGCAGTGGCA
CTCCAACGTCGGGCTCGACGAATTTGTCGGGCACGTCCTCAAGTTCAAGT
CTTTGGTTGACTCTACGCAAACCCGTGAATTGGGCACGGTCGACAAAGAA
CAACTTAAGAAAATGATGGGATGGGGACTCTTTATTGAACAGGTGCGTGA
ACCTCTTTCGTCTCGAGGAGAAACGTTTTGCTGCGAACATGTATCGACCT
CCTCCTTTCATCGTGTCCTCCTTCGTTGTGACCCATACACTCATGTCCAG
GCGCACGTGCGTATCGCCGCGGTTTTGATCTTGGGCAGAAAGATCGAAAA
CGCTTCAAGAATAAGCGGGGTAATATAGGTGCGTCGTCCTCTTTTTCCCT
ACTCGTGTTCTTACCGAAGGCTGGCTTTCGTGCAGGTGATCGGGGGGTTG
AATACCGACTCGCAGCGAGATAGTCTCACCCGGGCCTTGGGTCTTTCGCA
CCGTGCTATTCTGCCTCGTCTCTACCAGGGTGAGTAAATGTCTTGTCGCT
GCGTTGGACGCACCGCATCATAGTCTGTTCGATTCAAGTTTCAGTCCGCG
TTGCTTTTGTGGGAATACCGTCAGCTGCGGAATACGATTCCCCTCCGGGG
TGTTGTAGATGAAGCGAACAAGCAAGTATCTAACACGTTTTTACCCCCCA
CATCTTTCGCAGCGCGTAGATGGGTGCTTAGGTCCATGCTCGGCAGTACC
TTCTTGGCCGACCACCCTCGCCCCGAATCTTTGCTGATGTGGATCATGGC
CTGCTACGAAGAACTCCCACCGCCCCAAGGTAGGCAAGCCGGGCACACCC
CGAAAGTGTGTTTGCTGTCTTCTAGCTTGAGACCGAAAGTTATCCCCGTA
GATGACTTTTAATGTAGTCTAGGTTGGCTGCGTTTTGCGGCAGTAATGTC
GTAATTTCACCGCTGCTGTCAGAATCATCACGTACTCAGTATTTAGTCCC
CGGTAAGCGCATACTGACTATAACATCAATGTTGTCTTCCTTTACAACAT
GCCAACAGCCCACCAAGACGCGGGAGGCGAGACTGACCAGCCAGGGTCGT
TTGTCGACGATGCCAGCGCTGTTGTGAAATCTCGAGGAGACGTAGGGGTT
GTGTCGCATGCCTACTCGGCTCTCTTACTCTGCGGGGGCGGGAGCAAGTT
GGCGTCTTCAATCAGCACCAGAGATGCCGCTGGAGACGGTGGAAAAAGTA
CGAGGGTGCCATGCTTGTATGAGATGAGTGTAGACACCGCACAGAAGCGA
GCGTATGCGAGCAACTGCTTCACATTCTTGTCATCGAGGTGCGCACAGGA
TGATGGGCAACACAAGCATGGTGTGCTCGCCGAACAAGTCACCAGCTTCA
TCCTGGAGCTCTCTGAACTTGCTCAAACGGACATTGTGTCTCTCGAAATT
TTGTGTCTAGTGCTGCTAGAGCCGTGGAGACAGGTCACTTGCACTGCAAA
ACATCAAGCAGAAGACGCGGCGTGCGATTCACAAGAATCGCTGGGCACCT
CGCTGAACGGCGCGCTTCTAAAGCAGGCAAGTGCACTAGTACCCCCGATG
TGAGCCACGCCGACTGGGTTCTGGGGTATGGATGGACCCCTACCACAAAA
ATGTGTTCGTTGATGGACAGTGAAATCCGCAAAAGCTATTTGTTTTTAAA
GTCACGTCGACAATGGTGACCTTTGTCATCTCTGCAGGTTGAGGGTTTCC
TGGACGATGCTAGGCTGTGGTCCTTGAACGAATGGCTTCTGGGGGAGATA
TCACACCGCTACGAGTCGTTCGCCAGAGCCTACGTGGAAAAGCTGACGCG
ATCGCGGGAGGAGCTGGTTCGCAGAGAATATTTAACGTCTGCCGACTCGA
GTGTGCTCTGCTTAAGAAAAGAGGACGTGCAGAGCAGGCTGGGCGTTTTG
TGTTCAAGAAGCGAGCGATTAAAGCGCCTCGTGTTCCGGACGATAACTTT
GAATTGAAATAGGCATCAGGAGGTGTAGTGATCCCGCCCCCGAGCGCACG
CCATGTACACACTGGCCCATTTTTCGGCTGTAGGCGGTAATGAGGGACAA
GGCCGAGGGGTCAGGCCGTGAAAGAACAGCGAAGAGAGAAAACATCTCTC
GGCGTATGTGGGAAAGGGGGGTTGCGCGTTCCATGTCATGTGGACCATAC
TTGAGAGCGTTGGCGGTAAGAAAATTAGGTCATGCGGGCGACG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig116:57516..61558- >mRNA_E-siliculosus-1a_F_contig116.1045.1 ID=mRNA_E-siliculosus-1a_F_contig116.1045.1|Name=mRNA_E-siliculosus-1a_F_contig116.1045.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2376bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig116:57516..61558- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCCCAGGCGCCGGAGCACAAGCAGTGGCACTCCAACGTCGGGCT
CGACGAATTTGTCGGGCACGTCCTCAAGTTCAAGTCTTTGGTTGACTCTA
CGCAAACCCGTGAATTGGGCACGGTCGACAAAGAACAACTTAAGAAAATG
ATGGGATGGGGACTCTTTATTGAACAGATGGCTTCCCAGGCGCCGGAGCA
CAAGCAGTGGCACTCCAACGTCGGGCTCGACGAATTTGTCGGGCACGTCC
TCAAGTTCAAGTCTTTGGTTGACTCTACGCAAACCCGTGAATTGGGCACG
GTCGACAAAGAACAACTTAAGAAAATGATGGGATGGGGACTCTTTATTGA
ACAGGTGATCGGGGGGTTGAATACCGACTCGCAGCGAGATAGTCTCACCC
GGGCCTTGGGTCTTTCGCACCGTGCTATTCTGCCTCGTCTCTACCAGGGT
GATCGGGGGGTTGAATACCGACTCGCAGCGAGATAGTCTCACCCGGGCCT
TGGGTCTTTCGCACCGTGCTATTCTGCCTCGTCTCTACCAGGCGCGTAGA
TGGGTGCTTAGGTCCATGCTCGGCAGTACCTTCTTGGCCGACCACCCTCG
CCCCGAATCTTTGCTGATGTGGATCATGGCCTGCTACGAAGAACTCCCAC
CGCCCCAAGCGCGTAGATGGGTGCTTAGGTCCATGCTCGGCAGTACCTTC
TTGGCCGACCACCCTCGCCCCGAATCTTTGCTGATGTGGATCATGGCCTG
CTACGAAGAACTCCCACCGCCCCAAGCCCACCAAGACGCGGGAGGCGAGA
CTGACCAGCCAGGGTCGTTTGTCGACGATGCCAGCGCTGTTGTGAAATCT
CGAGGAGACGTAGGGGTTGTGTCGCATGCCTACTCGGCTCTCTTACTCTG
CGGGGGCGGGAGCAAGTTGGCGTCTTCAATCAGCACCAGAGATGCCGCTG
GAGACGGTGGAAAAAGTACGAGGGTGCCATGCTTGTATGAGATGAGTGTA
GACACCGCACAGAAGCGAGCGTATGCGAGCAACTGCTTCACATTCTTGTC
ATCGAGGTGCGCACAGGATGATGGGCAACACAAGCATGGTGTGCTCGCCG
AACAAGTCACCAGCTTCATCCTGGAGCTCTCTGAACTTGCTCAAACGGAC
ATTGTGTCTCTCGAAATTTTGTGTCTAGTGCTGCTAGAGCCGTGGAGACA
GGTCACTTGCACTGCAAAACATCAAGCAGAAGACGCGGCGTGCGATTCAC
AAGAATCGCTGGGCACCTCGCTGAACGGCGCGCTTCTAAAGCAGGCAAGT
GCACTACCCACCAAGACGCGGGAGGCGAGACTGACCAGCCAGGGTCGTTT
GTCGACGATGCCAGCGCTGTTGTGAAATCTCGAGGAGACGTAGGGGTTGT
GTCGCATGCCTACTCGGCTCTCTTACTCTGCGGGGGCGGGAGCAAGTTGG
CGTCTTCAATCAGCACCAGAGATGCCGCTGGAGACGGTGGAAAAAGTACG
AGGGTGCCATGCTTGTATGAGATGAGTGTAGACACCGCACAGAAGCGAGC
GTATGCGAGCAACTGCTTCACATTCTTGTCATCGAGGTGCGCACAGGATG
ATGGGCAACACAAGCATGGTGTGCTCGCCGAACAAGTCACCAGCTTCATC
CTGGAGCTCTCTGAACTTGCTCAAACGGACATTGTGTCTCTCGAAATTTT
GTGTCTAGTGCTGCTAGAGCCGTGGAGACAGGTCACTTGCACTGCAAAAC
ATCAAGCAGAAGACGCGGCGTGCGATTCACAAGAATCGCTGGGCACCTCG
CTGAACGGCGCGCTTCTAAAGCAGGCAAGTGCACTAGTTGAGGGTTTCCT
GGACGATGCTAGGCTGTGGTCCTTGAACGAATGGCTTCTGGGGGAGATAT
CACACCGCTACGAGTCGTTCGCCAGAGCCTACGTGGAAAAGCTGACGCGA
TCGCGGGAGGAGCTGGTTCGCAGAGAATATTTAACGTCTGCCGACTCGAG
TGTGCTCTGCTTAAGAAAAGAGGACGTGCAGAGCAGGCTGGGCGTTTTGT
GTTCAAGAAGCGAGCGATTAAAGCGCCTCGTGTTCCGGACGATAACTTTG
AATTGAGTTGAGGGTTTCCTGGACGATGCTAGGCTGTGGTCCTTGAACGA
ATGGCTTCTGGGGGAGATATCACACCGCTACGAGTCGTTCGCCAGAGCCT
ACGTGGAAAAGCTGACGCGATCGCGGGAGGAGCTGGTTCGCAGAGAATAT
TTAACGTCTGCCGACTCGAGTGTGCTCTGCTTAAGAAAAGAGGACGTGCA
GAGCAGGCTGGGCGTTTTGTGTTCAAGAAGCGAGCGATTAAAGCGCCTCG
TGTTCCGGACGATAACTTTGAATTGA back to top
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