mRNA_E-siliculosus-1a_F_contig1158.1030.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI) HSP 1 Score: 1033 bits (2671), Expect = 0.000e+0 Identity = 714/774 (92.25%), Postives = 718/774 (92.76%), Query Frame = 1
Query: 1 MSEPGGKPTGGSRRAPRRGFEVYSRRAAEAAXXXXXXXXXXXXXDGHDTTRGRALWEDEREAARLPKGDKEWKRDRGAKGTRRGAGAG--GTTVDAEVPSEERYEDMSRRVEEEVVAKLARAQMMGMMLKAHREQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----TDSAGPRQVLQRPKDSGRQRPGQAAPSPSARGAVVVGRDVRVGAPSQARSGARATPRSGGGRGALQQPAGLLKVSAEELLLSEGKSRGAATAAAAASTRALPGDLGGDPDEMGIEDAYAMVGGIERQHKTLLESLRREIGLVAAGRPGAAQATSGSAAXXXXXXXXXXXXXXXXAG---GELLPGAALYGKVSRVRVALSRALGSLIRRDPGFSLRKRLPNRLWMAHYRELEVIQQRLRQLLAGAGGASDTVGASQQQRQKQRQALRSRLFALVDEAERDIGGMVEAVERQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKANADKADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENMTLEERGRQQALQAFLTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTLREATALDAIGFEEHEARFRLYLLGACGTCLSRVDLGTFDGYLVLSDRHMVSCVQLHLMKAAAEAG------GGGTQDPGGEQGLGGTLARAIVMCVCTVSASME 2277
MSEPGGKPTGGSRRAPRRGFEVYSRRAAEAAXXXXXXXXXXX DGHDTTRGRALWEDEREAARLPKGDKEWKRDRGAKG RRGAGAG GT VDA+VPSEERYEDMSRRVEEEVVAKLARAQMMGMMLKAHREQXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX TDSAGPRQVLQRPKDSGRQRPGQAAPSPSARGAVVVGRDVRVGAPSQARSGA ATPRSGGGRGA QQPAGLLKVSAEELLLSEGKSRGAATAAAAA+TRALPGDLGGDPDEMGIEDAYAMV GIERQHKTLLESLRREIGLVAAGRPGAAQATSGSAA XXXXXXXXXXXXXX GELLPGAALYGKVSRVRVALSRALGSLIRRDPGFSLRKRLPNRLWMAHYRELEVIQQRLRQLL GAGGASDT GASQQQRQKQ QALRSRLFALVDEAERDIGGMVEAVERQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KANADK DA XXXXXXXXXXXXXXXXXXXXXXXXXXXX+ MTLEERGRQQALQAFLTSLGDLSRYRGLHG GDSEGSGGKGSK SYARAHELYLRALKVDPSSGK VWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTLREATALDAIGFEEHEARFRLYLLGACGTCLSRVDLGTFDGYLVLSDRHMVSCVQLHLMKAAAEAG G GTQDPGGEQGLGGTLAR+IVMCVCTVSASME
Sbjct: 1 MSEPGGKPTGGSRRAPRRGFEVYSRRAAEAAXXXXXXXXXXX--DGHDTTRGRALWEDEREAARLPKGDKEWKRDRGAKGARRGAGAGAGGTAVDADVPSEERYEDMSRRVEEEVVAKLARAQMMGMMLKAHREQXXXXXXXXXXXXXXXXDGDSXXXXXXXXXXXXXXXXXXGTDSAGPRQVLQRPKDSGRQRPGQAAPSPSARGAVVVGRDVRVGAPSQARSGAGATPRSGGGRGARQQPAGLLKVSAEELLLSEGKSRGAATAAAAAATRALPGDLGGDPDEMGIEDAYAMVSGIERQHKTLLESLRREIGLVAAGRPGAAQATSGSAAVGXXXXXXXXXXXXXXXXXXXGELLPGAALYGKVSRVRVALSRALGSLIRRDPGFSLRKRLPNRLWMAHYRELEVIQQRLRQLLTGAGGASDTAGASQQQRQKQPQALRSRLFALVDEAERDIGGMVEAVERQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH----KANADKTDAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-MTLEERGRQQALQAFLTSLGDLSRYRGLHGRGDSEGSGGKGSKASYARAHELYLRALKVDPSSGK---------VWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTLREATALDAIGFEEHEARFRLYLLGACGTCLSRVDLGTFDGYLVLSDRHMVSCVQLHLMKAAAEAGXXXXXRGDGTQDPGGEQGLGGTLARSIVMCVCTVSASME 758
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: A0A835YPQ7_9STRA (Zc3h12a-like ribonuclease NYN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ7_9STRA) HSP 1 Score: 163 bits (413), Expect = 7.330e-38 Identity = 151/432 (34.95%), Postives = 211/432 (48.84%), Query Frame = 1
Query: 874 IERQHKTLLESLRREIGLVAAGRPGAAQATSGSAAXXXXXXXXXXXXXXXXAGGELLPGAALYGKVSRVRVALSRALGSLIRRDPGFSLRKRLPNRLWMAHYRELEVIQQRLRQLLAGAGGASDTVGASQQQRQKQRQALRSRLFALVDEAERDIGGMVEAVERQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKANADKADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENMTLEERGRQQALQAFLTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTLREATALD-----AIGFEEHEARFRLYLLGACGTCLSRVDLGTFDGYLVLSDRHMVSCVQLHL 2154
+E+++K++LE LR E+GL P A + G A L+ + + R L+ A +LI+RD + R++LP+RLW++ Y+EL+ +QQ L+ L AG A+ T ++ Q ALR+ LF ++ +AER+IGG+V A+ER XXXXXXXXXXXXXXXXXXXXXX D A A R+ LQA LT++GDL+RY+ LH G + A LY A ++ P +GK WNQ+A++A+ ++D+ AFY YLR LCAA RE LL LHE+CK +L+ L A + EH RF L LL ACG CL+RVDL FD +L + H++ +QL L
Sbjct: 8 LEKRYKSILEQLRGELGLDPGYVPRAHPSERGHGQPGNTASGYFHAIS-----------APLWESLQKHRQPLTSATRALIQRDLPLAARRKLPHRLWLSFYKELDAVQQTLKLLATPAGAAALTRDGPRRAPQANADALRALLFCMIGQAEREIGGLVSAIERSEGSXXXXXXXXXXXXXXXXXXXXXXE---------DAAVA---------------------------------------------RRHVLQALLTAMGDLARYKQLHRPA--------GEPRDWGAAEALYHCAFRLRPGAGKP---------WNQLALVATLKKDSFAAFYHYLRSLCAADEPCPAREPLLALHERCKRQLAALSGARGXXXXXXXVLPLSEHTHRFLLRLLVACGACLARVDLSAFDAHLAAARVHLLMSLQLQL 357
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: A0A1S3UEZ7_VIGRR (protein SMG7 isoform X1 n=10 Tax=Vigna TaxID=3913 RepID=A0A1S3UEZ7_VIGRR) HSP 1 Score: 75.9 bits (185), Expect = 2.170e-10 Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 1
Query: 1648 LTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTLREATALDAI-GFEEHEAR 2034
L LGDL+RY+GL+GGGDS+ K YA A YL+A + PSSG ++Q+A+LAS +D L Y Y R L P + R++L++ EK + S L + A+ G + EA+
Sbjct: 174 LIYLGDLARYKGLYGGGDSK-------KREYAAASSYYLQAATIWPSSGNP---------YHQLALLASYNEDELTTIYCYFRSLAVDSPFSTARDNLILAFEKNRQSYSKLSGDVKVHAVNGIGKGEAK 287
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: A0A0L9VTZ6_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9VTZ6_PHAAN) HSP 1 Score: 73.2 bits (178), Expect = 4.390e-10 Identity = 43/112 (38.39%), Postives = 60/112 (53.57%), Query Frame = 1
Query: 1648 LTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTL 1983
L LGDL+RY+GL+GGGDS+ K YA A YL+A + PSSG ++Q+A+LAS +D L Y Y R L P + R++L++ EK + S L
Sbjct: 179 LIYLGDLARYKGLYGGGDSK-------KHEYAAASSYYLQAATIWPSSGNP---------YHQLALLASYNEDELTTVYCYFRSLAVDSPFSTTRDNLILAFEKNRQSYSKL 274
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: A0A2R6P802_ACTCC (Uncharacterized protein n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6P802_ACTCC) HSP 1 Score: 71.2 bits (173), Expect = 5.900e-9 Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 1
Query: 1648 LTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTLREATALDAI 2010
L LGDL+RY+GL+G GDS+ YA A YL+A + PSSG +Q+A+LA+ D L A Y Y R L P + R++L+V EK + S L T AI
Sbjct: 178 LVYLGDLARYKGLYGEGDSKSR-------DYAAASSYYLQAASIWPSSGNPH---------HQLAILATYSGDELVAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSLLHGDTKASAI 282
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: A0A1Q3B2D4_CEPFO (EST1_DNA_bind domain-containing protein/EST1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B2D4_CEPFO) HSP 1 Score: 70.9 bits (172), Expect = 7.770e-9 Identity = 50/138 (36.23%), Postives = 67/138 (48.55%), Query Frame = 1
Query: 1597 ENMT-LEERGRQQA--------LQAFLTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTL 1983
EN T +E+ G++ A L LGDL+RY+GL+G GDS+ YA A YL+A + PSSG +Q+A+LAS D L A Y Y R L P T R++L+V EK + S L
Sbjct: 154 ENRTAMEKEGKKSADVKKGLVSCHRCLIYLGDLARYKGLYGDGDSKAR-------EYAAASSYYLQATSLLPSSGNPH---------HQLAILASYSGDELAAVYRYFRSLAVDNPFTTARDNLIVAFEKNRQSYSQL 275
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: A0A540N6X8_MALBA (Uncharacterized protein n=8 Tax=Maleae TaxID=721813 RepID=A0A540N6X8_MALBA) HSP 1 Score: 70.9 bits (172), Expect = 8.070e-9 Identity = 48/141 (34.04%), Postives = 69/141 (48.94%), Query Frame = 1
Query: 1597 ENMTLEERGRQQAL---QAFLTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTLREATALDAI 2010
EN T+ ++ ++ L L LGDL+RY+GL+G GDS+ YA A Y++A + PSSG +Q+A+LAS D L A Y Y R L P + R++L+V EK + S L T A+
Sbjct: 153 ENRTVIDKDGKKGLISCHRCLIYLGDLARYKGLYGEGDSK-------TREYAAASSYYMQAASLWPSSGNPH---------HQLAILASYSGDELVAVYRYFRSLAVDCPFSTARDNLIVAFEKNRQSYSQLSGNTNASAV 277
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: A0A6A3B8U4_HIBSY (Protein SMG7 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3B8U4_HIBSY) HSP 1 Score: 70.5 bits (171), Expect = 8.350e-9 Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 1648 LTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTL 1983
L LGDL+RY+GL+G GDS+ YA A YL+A + PSSG RL A+LAS D L A Y Y R L P T R++L+V EK + S L
Sbjct: 131 LIYLGDLARYKGLYGDGDSK-------SCEYAAASSYYLQAASIWPSSGNPRHRL---------AILASYSGDELVAVYRYFRSLALDNPFTTSRDNLIVAFEKNRHNYSQL 226
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: A0A392NLR4_9FABA (Protein SMG7-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NLR4_9FABA) HSP 1 Score: 67.0 bits (162), Expect = 9.970e-9 Identity = 40/104 (38.46%), Postives = 54/104 (51.92%), Query Frame = 1
Query: 1648 LTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRLLGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEK 1959
L LGDL+RY+GL+G GDS +K + A YL+A + PSSG +Q+A+LAS D+L Y Y R L P T R++L+V EK
Sbjct: 138 LIYLGDLARYKGLYGEGDS-------TKREFTAASSYYLQAASIWPSSGNPH---------HQLALLASYSGDDLATIYRYFRSLAVDSPFTTARDNLIVAFEK 225
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Match: M1C6P7_SOLTU (Cig3 n=4 Tax=Solanum TaxID=4107 RepID=M1C6P7_SOLTU) HSP 1 Score: 70.5 bits (171), Expect = 1.020e-8 Identity = 45/132 (34.09%), Postives = 66/132 (50.00%), Query Frame = 1
Query: 1600 NMTLEERGRQQALQAFLTSLGDLSRYRGLHGGGDSEGSGGKGSKVSYARAHELYLRALKVDPSSGKASSRL----LGRRVWNQMAVLASSRQDNLEAFYAYLRGLCAAVPHTAGRESLLVLHEKCKARLSTL 1983
N ++E + + L LGDL+RYRGL+G GDS+ A A Y +A + PSSG ++ + V++Q+A+LAS D L A Y Y R L P T R++L++ EK + S L
Sbjct: 164 NKSIEVKKGLISCHRCLIYLGDLARYRGLYGEGDSKAR-------DLAAASSYYTQASSLWPSSGNPHHQISYVEIADSVFSQLAILASYSSDELVAIYRYFRSLAVENPFTTARDNLIIAFEKNRQFFSQL 288 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1158.1030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1158.1030.1 >prot_E-siliculosus-1a_F_contig1158.1030.1 ID=prot_E-siliculosus-1a_F_contig1158.1030.1|Name=mRNA_E-siliculosus-1a_F_contig1158.1030.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=759bp MSEPGGKPTGGSRRAPRRGFEVYSRRAAEAAKTAAAGGGGGGGGDGHDTTback to top mRNA from alignment at E-siliculosus-1a_F_contig1158:32605..36228+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1158.1030.1 ID=mRNA_E-siliculosus-1a_F_contig1158.1030.1|Name=mRNA_E-siliculosus-1a_F_contig1158.1030.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1158:32605..36228+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1158:32605..36228+ >mRNA_E-siliculosus-1a_F_contig1158.1030.1 ID=mRNA_E-siliculosus-1a_F_contig1158.1030.1|Name=mRNA_E-siliculosus-1a_F_contig1158.1030.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1158:32605..36228+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |