mRNA_E-siliculosus-1a_F_contig11573.1025.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A6H5K0I2_9PHAE (OB_NTP_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I2_9PHAE) HSP 1 Score: 363 bits (931), Expect = 1.400e-118 Identity = 221/273 (80.95%), Postives = 225/273 (82.42%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRREGRKRKVLQVDGG---------------------------VGEGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSS--RGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLV 732
GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRAR XXXXXXXXXX EGRKRKVLQVDGG VGEGEVDGEAGLDLSSLEFYMAQDV +QLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADG+ SSSS RGAAA+AGRGDGLLCYGQLMETQRPFVSSVTPLPALQ LLLFSARVDTSEDASL+
Sbjct: 26 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARXXXXXXXXXXXXXXXXXXXXXXXXXEGRKRKVLQVDGGGDAAXXXXXXXXXXXXXXXXRRDLRGEVGEGEVDGEAGLDLSSLEFYMAQDV--DQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGIHSSSSSSRGAAANAGRGDGLLCYGQLMETQRPFVSSVTPLPALQTLLLFSARVDTSEDASLI 296
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: D8LEZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ4_ECTSI) HSP 1 Score: 364 bits (934), Expect = 7.320e-113 Identity = 219/271 (80.81%), Postives = 225/271 (83.03%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRREGRKRKVLQVDGG---------------------------VGEGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLV 732
GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRAR XXXXXXXXXX GRKRKVLQVDGG VGEGEVDGEAGLDLSSLEFYMAQDV +QLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGG+A+G+ SSSSRGAAA+AGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASL+
Sbjct: 988 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARXXXXXXXXXXXXXXXXXXXXXXXXXXGRKRKVLQVDGGGDAAXXXXXXXXXXXDVEEARRDLRGEVGEGEVDGEAGLDLSSLEFYMAQDV--DQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGTANGIHSSSSRGAAANAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLI 1256
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A3P9AJF1_ESOLU (DExH-box helicase 34 n=3 Tax=Protacanthopterygii TaxID=41705 RepID=A0A3P9AJF1_ESOLU) HSP 1 Score: 120 bits (300), Expect = 2.870e-27 Identity = 90/259 (34.75%), Postives = 137/259 (52.90%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVL------QVDGGVG--------EGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
GL+EQRLYE+ LRRQF++LL S GL L +RA + KL +LK EG +RKVL +VDG G + E GE+ +D+ ++F + +V E Q A ++ + L+ R A++K +LC+GLYPQ A+ D NA R +EQ + TR G+ + P+SV A + G+ +G D+ R LL + L+ET +P++S+ +PALQALLL + +D++ D +
Sbjct: 669 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGGRGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEDGQEVDGDSGSDAEPDRRDKEPTGESSVDIQEVKFKLRHNVSELQEAAAASQDLSSRQQALLKLLLCRGLYPQLALPDEHNATRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREG-----------DSSRHQ-LLAFVTLLETNKPYISNCVRVPALQALLLVANSLDSNADCT 913
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A3P9AKF9_ESOLU (DExH-box helicase 34 n=2 Tax=Esox lucius TaxID=8010 RepID=A0A3P9AKF9_ESOLU) HSP 1 Score: 119 bits (298), Expect = 5.340e-27 Identity = 90/259 (34.75%), Postives = 137/259 (52.90%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVL------QVDGGVG--------EGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
GL+EQRLYE+ LRRQF++LL S GL L +RA + KL +LK EG +RKVL +VDG G + E GE+ +D+ ++F + +V E Q A ++ + L+ R A++K +LC+GLYPQ A+ D NA R +EQ + TR G+ + P+SV A + G+ +G D+ R LL + L+ET +P++S+ +PALQALLL + +D++ D +
Sbjct: 669 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGGRGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEDGQEVDGDSGSDAEPDRRDKEPTGESSVDIQEVKFKLRHNVSELQEAAAASQDLSSRQQALLKLLLCRGLYPQLALPDEHNATRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREGPDKG-------DSSRHQ-LLAFVTLLETNKPYISNCVRVPALQALLLVANSLDSNADCT 917
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A8C7II63_ONCKI (DExH-box helicase 34 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7II63_ONCKI) HSP 1 Score: 118 bits (296), Expect = 9.800e-27 Identity = 92/266 (34.59%), Postives = 136/266 (51.13%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVLQVDGGV-GEG------------------EVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDG--LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
GL+EQRLYE+ LRRQF++LL S GL L +RA + KL +LK EG +RKVL+++ G+ GEG E G LD+ ++F + +V E Q A S+ + L+ R A++K +LC+GLYPQ A+ D NA R +EQ + TR G+ + P+SV A + G+ +G D G LL + L+ET +P+VS+ +PALQALLL + +D++ D +
Sbjct: 668 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGERGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEEGLDGEGDSGSDTEQGATGRDGKDKEQTGGHNLDIQEVKFKLRHNVSELQEAASASQDLSSRQQALLKLLLCRGLYPQLALPDEHNANRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREGP----------DKGESSKHQLLAFVTLLETNKPYVSNCVRVPALQALLLVANSLDSNADCT 921
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A8C7ILG2_ONCKI (DExH-box helicase 34 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7ILG2_ONCKI) HSP 1 Score: 118 bits (296), Expect = 9.850e-27 Identity = 92/266 (34.59%), Postives = 136/266 (51.13%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVLQVDGGV-GEG------------------EVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDG--LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
GL+EQRLYE+ LRRQF++LL S GL L +RA + KL +LK EG +RKVL+++ G+ GEG E G LD+ ++F + +V E Q A S+ + L+ R A++K +LC+GLYPQ A+ D NA R +EQ + TR G+ + P+SV A + G+ +G D G LL + L+ET +P+VS+ +PALQALLL + +D++ D +
Sbjct: 668 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGERGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEEGLDGEGDSGSDTEQGATGRDGKDKEQTGGHNLDIQEVKFKLRHNVSELQEAASASQDLSSRQQALLKLLLCRGLYPQLALPDEHNANRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREGP----------DKGESSKHQLLAFVTLLETNKPYVSNCVRVPALQALLLVANSLDSNADCT 921
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: F7FBJ8_ORNAN (DExH-box helicase 34 n=4 Tax=Monotremata TaxID=9255 RepID=F7FBJ8_ORNAN) HSP 1 Score: 117 bits (294), Expect = 1.810e-26 Identity = 88/262 (33.59%), Postives = 133/262 (50.76%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRRE---GRKRKVLQVDGGVG---------EGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDG------LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLV 732
GL+EQRLYE+ LRRQF++LL GL+ A +++LR LK R E GR+R+VL + G G EG+ +D+ ++F + V E Q A S+GR L+R ++A++K +L +GLYPQ A AD N+ R ++Q + T+ G + P+SV A + +G + R DG LL + L+ET +P++ + +PALQALLLFS +DT+ D S +
Sbjct: 682 GLEEQRLYEMANLRRQFKELLRDHGLL-----ADSRTTPADSFSRQRQHRERQELRRLKRRHEEGEGRRRRVLPLPGQEGGSSSGDDAAEGDPREGGAVDIQDVKFKLRHSVDELQAAASAGRDLSRDELALLKLVLARGLYPQLAAADHFNSCRKDSDQIFHTKTKQGTVLHPTSVFASNPEVL----------------QGREKEGRRSDGKSSQHQLLAFVSLLETTKPYLVNCVRVPALQALLLFSRCLDTNGDCSRI 922
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A4W5JYU1_9TELE (DEAH (Asp-Glu-Ala-His) box polypeptide 34 n=2 Tax=Salmonidae TaxID=8015 RepID=A0A4W5JYU1_9TELE) HSP 1 Score: 116 bits (290), Expect = 6.130e-26 Identity = 91/266 (34.21%), Postives = 133/266 (50.00%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVLQV------DGGVGEGEVDGEAG-------------LDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDG--LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
GL+EQRLYE+ LRRQF++LL S GL L +RA + KL +LK EG +RKVL++ DG G G G LD+ ++F + +V E Q A S+ + L+ R A++K +LC+GLYPQ A+ D NA R +EQ + TR G+ + P+SV A + G+ +G D G LL + L+ET +P+VS+ +PALQALLL + +D++ D +
Sbjct: 607 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGERGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEEGQDGDGDSGSDTEQGTTGRDGKDKEQTGGHNLDIQEVKFKLRHNVSELQEAASASQDLSSRQQALLKLLLCRGLYPQLALPDEHNANRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREGP----------DKGESSRHQLLAFVTLLETNKPYVSNCVRVPALQALLLVANSLDSNADCT 860
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: UPI000E7773F4 (probable ATP-dependent RNA helicase DHX34 isoform X1 n=2 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=UPI000E7773F4) HSP 1 Score: 115 bits (288), Expect = 6.600e-26 Identity = 89/250 (35.60%), Postives = 130/250 (52.00%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRREGRKRKVLQV-DGGVG----EGEVDGEAG---LDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
GL+E RLYE LRRQF++LL GL+ A Q R +LR EGRKRKVL++ +G G EG+ G AG +D+ ++F + +V E Q A +G L+ +A++K +LC+GLYPQ AV D N+ R ++Q + T+ G+ + P+ V A + T + G SRG+ LL + L+ET +P++ + PALQALLLFS +DTS D +
Sbjct: 156 GLEEHRLYEAANLRRQFQELLRDHGLL---EAVQGPRDSSARQSRHRERRELHRLRRRHEETEGRKRKVLKLREGEAGSSSDEGDCAGRAGPPGVDIQDVKFKLRHNVDELQAA--AGAALSSHQLALLKLVLCRGLYPQLAVPDQYNSCRKDSDQIFHTKNKQGIVLHPTCVFAGSPELLQTTEEKAEPGR----SRGSQEGLSSRHQLLAFVSLLETNKPYLVNCLRAPALQALLLFSRALDTSADCT 396
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A6I9NYA0_9TELE (probable ATP-dependent RNA helicase DHX34 n=3 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9NYA0_9TELE) HSP 1 Score: 115 bits (289), Expect = 8.150e-26 Identity = 87/259 (33.59%), Postives = 140/259 (54.05%), Query Frame = 1
Query: 1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKM---RREGRKRKVLQVDGG------------VGEGEVDGEAG--LDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
GL+EQRLYE+ LRRQF++LL S GL+ + ++A ++KL ++K ++E +RKVL+++ G G G+ D +AG +D+ ++F + +V E Q A S + ++ R A++K +LC+GLYPQ A+ D N+ R +EQ + TR G+ + P+SV A + G DG R D+ R LL + L+ET +P++S+ +PALQALLL + VD++ D +
Sbjct: 664 GLEEQRLYEMVNLRRQFKELLRSHGLLEIQSSAPSGGDRVQRRQRLT---ERKKLHQMKRDHEQQESGRRKVLRLEEGQEEFSSGSDAEGAGRGKKDDQAGQNVDIQEVKFKLRHNVSELQEAASVSQDMSSRQQALLKLLLCRGLYPQLALPDEHNSTRKDSEQVFHTRNKQGVVIHPTSVFATDPEVLQVPEG---DGDMGPERR----DSSRHQ-LLAFVTLLETNKPYLSNCVRVPALQALLLVANTVDSNADCT 911 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11573.1025.1 >prot_E-siliculosus-1a_F_contig11573.1025.1 ID=prot_E-siliculosus-1a_F_contig11573.1025.1|Name=mRNA_E-siliculosus-1a_F_contig11573.1025.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=244bp GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQARAARGGAGGGPback to top mRNA from alignment at E-siliculosus-1a_F_contig11573:230..1536+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11573.1025.1 ID=mRNA_E-siliculosus-1a_F_contig11573.1025.1|Name=mRNA_E-siliculosus-1a_F_contig11573.1025.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1307bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11573:230..1536+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11573:230..1536+ >mRNA_E-siliculosus-1a_F_contig11573.1025.1 ID=mRNA_E-siliculosus-1a_F_contig11573.1025.1|Name=mRNA_E-siliculosus-1a_F_contig11573.1025.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11573:230..1536+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |