mRNA_E-siliculosus-1a_F_contig11573.1025.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11573.1025.1
Unique NamemRNA_E-siliculosus-1a_F_contig11573.1025.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A6H5K0I2_9PHAE (OB_NTP_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I2_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 1.400e-118
Identity = 221/273 (80.95%), Postives = 225/273 (82.42%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRREGRKRKVLQVDGG---------------------------VGEGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSS--RGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLV 732
            GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRAR XXXXXXXXXX              EGRKRKVLQVDGG                           VGEGEVDGEAGLDLSSLEFYMAQDV  +QLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADG+ SSSS  RGAAA+AGRGDGLLCYGQLMETQRPFVSSVTPLPALQ LLLFSARVDTSEDASL+
Sbjct:   26 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARXXXXXXXXXXXXXXXXXXXXXXXXXEGRKRKVLQVDGGGDAAXXXXXXXXXXXXXXXXRRDLRGEVGEGEVDGEAGLDLSSLEFYMAQDV--DQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGIHSSSSSSRGAAANAGRGDGLLCYGQLMETQRPFVSSVTPLPALQTLLLFSARVDTSEDASLI 296          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: D8LEZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ4_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 7.320e-113
Identity = 219/271 (80.81%), Postives = 225/271 (83.03%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRREGRKRKVLQVDGG---------------------------VGEGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLV 732
            GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRAR XXXXXXXXXX               GRKRKVLQVDGG                           VGEGEVDGEAGLDLSSLEFYMAQDV  +QLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGG+A+G+ SSSSRGAAA+AGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASL+
Sbjct:  988 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARXXXXXXXXXXXXXXXXXXXXXXXXXXGRKRKVLQVDGGGDAAXXXXXXXXXXXDVEEARRDLRGEVGEGEVDGEAGLDLSSLEFYMAQDV--DQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGTANGIHSSSSRGAAANAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLI 1256          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A3P9AJF1_ESOLU (DExH-box helicase 34 n=3 Tax=Protacanthopterygii TaxID=41705 RepID=A0A3P9AJF1_ESOLU)

HSP 1 Score: 120 bits (300), Expect = 2.870e-27
Identity = 90/259 (34.75%), Postives = 137/259 (52.90%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVL------QVDGGVG--------EGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
            GL+EQRLYE+  LRRQF++LL S GL  L    +RA               + KL +LK      EG +RKVL      +VDG  G        + E  GE+ +D+  ++F +  +V E Q A ++ + L+ R  A++K +LC+GLYPQ A+ D  NA R  +EQ + TR   G+ + P+SV A     +     G+ +G           D+ R   LL +  L+ET +P++S+   +PALQALLL +  +D++ D +
Sbjct:  669 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGGRGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEDGQEVDGDSGSDAEPDRRDKEPTGESSVDIQEVKFKLRHNVSELQEAAAASQDLSSRQQALLKLLLCRGLYPQLALPDEHNATRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREG-----------DSSRHQ-LLAFVTLLETNKPYISNCVRVPALQALLLVANSLDSNADCT 913          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A3P9AKF9_ESOLU (DExH-box helicase 34 n=2 Tax=Esox lucius TaxID=8010 RepID=A0A3P9AKF9_ESOLU)

HSP 1 Score: 119 bits (298), Expect = 5.340e-27
Identity = 90/259 (34.75%), Postives = 137/259 (52.90%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVL------QVDGGVG--------EGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
            GL+EQRLYE+  LRRQF++LL S GL  L    +RA               + KL +LK      EG +RKVL      +VDG  G        + E  GE+ +D+  ++F +  +V E Q A ++ + L+ R  A++K +LC+GLYPQ A+ D  NA R  +EQ + TR   G+ + P+SV A     +     G+ +G           D+ R   LL +  L+ET +P++S+   +PALQALLL +  +D++ D +
Sbjct:  669 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGGRGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEDGQEVDGDSGSDAEPDRRDKEPTGESSVDIQEVKFKLRHNVSELQEAAAASQDLSSRQQALLKLLLCRGLYPQLALPDEHNATRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREGPDKG-------DSSRHQ-LLAFVTLLETNKPYISNCVRVPALQALLLVANSLDSNADCT 917          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A8C7II63_ONCKI (DExH-box helicase 34 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7II63_ONCKI)

HSP 1 Score: 118 bits (296), Expect = 9.800e-27
Identity = 92/266 (34.59%), Postives = 136/266 (51.13%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVLQVDGGV-GEG------------------EVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDG--LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
            GL+EQRLYE+  LRRQF++LL S GL  L    +RA               + KL +LK      EG +RKVL+++ G+ GEG                  E  G   LD+  ++F +  +V E Q A S+ + L+ R  A++K +LC+GLYPQ A+ D  NA R  +EQ + TR   G+ + P+SV A     +     G+ +G           D G      LL +  L+ET +P+VS+   +PALQALLL +  +D++ D +
Sbjct:  668 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGERGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEEGLDGEGDSGSDTEQGATGRDGKDKEQTGGHNLDIQEVKFKLRHNVSELQEAASASQDLSSRQQALLKLLLCRGLYPQLALPDEHNANRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREGP----------DKGESSKHQLLAFVTLLETNKPYVSNCVRVPALQALLLVANSLDSNADCT 921          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A8C7ILG2_ONCKI (DExH-box helicase 34 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7ILG2_ONCKI)

HSP 1 Score: 118 bits (296), Expect = 9.850e-27
Identity = 92/266 (34.59%), Postives = 136/266 (51.13%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVLQVDGGV-GEG------------------EVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDG--LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
            GL+EQRLYE+  LRRQF++LL S GL  L    +RA               + KL +LK      EG +RKVL+++ G+ GEG                  E  G   LD+  ++F +  +V E Q A S+ + L+ R  A++K +LC+GLYPQ A+ D  NA R  +EQ + TR   G+ + P+SV A     +     G+ +G           D G      LL +  L+ET +P+VS+   +PALQALLL +  +D++ D +
Sbjct:  668 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGERGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEEGLDGEGDSGSDTEQGATGRDGKDKEQTGGHNLDIQEVKFKLRHNVSELQEAASASQDLSSRQQALLKLLLCRGLYPQLALPDEHNANRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREGP----------DKGESSKHQLLAFVTLLETNKPYVSNCVRVPALQALLLVANSLDSNADCT 921          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: F7FBJ8_ORNAN (DExH-box helicase 34 n=4 Tax=Monotremata TaxID=9255 RepID=F7FBJ8_ORNAN)

HSP 1 Score: 117 bits (294), Expect = 1.810e-26
Identity = 88/262 (33.59%), Postives = 133/262 (50.76%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRRE---GRKRKVLQVDGGVG---------EGEVDGEAGLDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDG------LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLV 732
            GL+EQRLYE+  LRRQF++LL   GL+     A                  +++LR LK R E   GR+R+VL + G  G         EG+      +D+  ++F +   V E Q A S+GR L+R ++A++K +L +GLYPQ A AD  N+ R  ++Q + T+   G  + P+SV A     +                +G   +  R DG      LL +  L+ET +P++ +   +PALQALLLFS  +DT+ D S +
Sbjct:  682 GLEEQRLYEMANLRRQFKELLRDHGLL-----ADSRTTPADSFSRQRQHRERQELRRLKRRHEEGEGRRRRVLPLPGQEGGSSSGDDAAEGDPREGGAVDIQDVKFKLRHSVDELQAAASAGRDLSRDELALLKLVLARGLYPQLAAADHFNSCRKDSDQIFHTKTKQGTVLHPTSVFASNPEVL----------------QGREKEGRRSDGKSSQHQLLAFVSLLETTKPYLVNCVRVPALQALLLFSRCLDTNGDCSRI 922          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A4W5JYU1_9TELE (DEAH (Asp-Glu-Ala-His) box polypeptide 34 n=2 Tax=Salmonidae TaxID=8015 RepID=A0A4W5JYU1_9TELE)

HSP 1 Score: 116 bits (290), Expect = 6.130e-26
Identity = 91/266 (34.21%), Postives = 133/266 (50.00%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRR---EGRKRKVLQV------DGGVGEGEVDGEAG-------------LDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDG--LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
            GL+EQRLYE+  LRRQF++LL S GL  L    +RA               + KL +LK      EG +RKVL++      DG  G     G  G             LD+  ++F +  +V E Q A S+ + L+ R  A++K +LC+GLYPQ A+ D  NA R  +EQ + TR   G+ + P+SV A     +     G+ +G           D G      LL +  L+ET +P+VS+   +PALQALLL +  +D++ D +
Sbjct:  607 GLEEQRLYEMVNLRRQFKELLRSHGL--LEVLEERAPSGGERGQRRERLTERRKLHQLKREHDLAEGGRRKVLRLEEGQDGDGDSGSDTEQGTTGRDGKDKEQTGGHNLDIQEVKFKLRHNVSELQEAASASQDLSSRQQALLKLLLCRGLYPQLALPDEHNANRKDSEQVFHTRNKQGVVIHPTSVFASDPEVLHVPEEGNREGP----------DKGESSRHQLLAFVTLLETNKPYVSNCVRVPALQALLLVANSLDSNADCT 860          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: UPI000E7773F4 (probable ATP-dependent RNA helicase DHX34 isoform X1 n=2 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=UPI000E7773F4)

HSP 1 Score: 115 bits (288), Expect = 6.600e-26
Identity = 89/250 (35.60%), Postives = 130/250 (52.00%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKMRREGRKRKVLQV-DGGVG----EGEVDGEAG---LDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
            GL+E RLYE   LRRQF++LL   GL+    A Q  R                +LR      EGRKRKVL++ +G  G    EG+  G AG   +D+  ++F +  +V E Q A  +G  L+   +A++K +LC+GLYPQ AV D  N+ R  ++Q + T+   G+ + P+ V A     +  T   +  G     SRG+         LL +  L+ET +P++ +    PALQALLLFS  +DTS D +
Sbjct:  156 GLEEHRLYEAANLRRQFQELLRDHGLL---EAVQGPRDSSARQSRHRERRELHRLRRRHEETEGRKRKVLKLREGEAGSSSDEGDCAGRAGPPGVDIQDVKFKLRHNVDELQAA--AGAALSSHQLALLKLVLCRGLYPQLAVPDQYNSCRKDSDQIFHTKNKQGIVLHPTCVFAGSPELLQTTEEKAEPGR----SRGSQEGLSSRHQLLAFVSLLETNKPYLVNCLRAPALQALLLFSRALDTSADCT 396          
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Match: A0A6I9NYA0_9TELE (probable ATP-dependent RNA helicase DHX34 n=3 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9NYA0_9TELE)

HSP 1 Score: 115 bits (289), Expect = 8.150e-26
Identity = 87/259 (33.59%), Postives = 140/259 (54.05%), Query Frame = 1
Query:    1 GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQXXXXXXXXXXGPSKEKLRELKM---RREGRKRKVLQVDGG------------VGEGEVDGEAG--LDLSSLEFYMAQDVGENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQYVTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDAS 726
            GL+EQRLYE+  LRRQF++LL S GL+ + ++A                  ++KL ++K    ++E  +RKVL+++ G             G G+ D +AG  +D+  ++F +  +V E Q A S  + ++ R  A++K +LC+GLYPQ A+ D  N+ R  +EQ + TR   G+ + P+SV A     +    G   DG      R    D+ R   LL +  L+ET +P++S+   +PALQALLL +  VD++ D +
Sbjct:  664 GLEEQRLYEMVNLRRQFKELLRSHGLLEIQSSAPSGGDRVQRRQRLT---ERKKLHQMKRDHEQQESGRRKVLRLEEGQEEFSSGSDAEGAGRGKKDDQAGQNVDIQEVKFKLRHNVSELQEAASVSQDMSSRQQALLKLLLCRGLYPQLALPDEHNSTRKDSEQVFHTRNKQGVVIHPTSVFATDPEVLQVPEG---DGDMGPERR----DSSRHQ-LLAFVTLLETNKPYLSNCVRVPALQALLLVANTVDSNADCT 911          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11573.1025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0I2_9PHAE1.400e-11880.95OB_NTP_bind domain-containing protein n=1 Tax=Ecto... [more]
D8LEZ4_ECTSI7.320e-11380.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3P9AJF1_ESOLU2.870e-2734.75DExH-box helicase 34 n=3 Tax=Protacanthopterygii T... [more]
A0A3P9AKF9_ESOLU5.340e-2734.75DExH-box helicase 34 n=2 Tax=Esox lucius TaxID=801... [more]
A0A8C7II63_ONCKI9.800e-2734.59DExH-box helicase 34 n=1 Tax=Oncorhynchus kisutch ... [more]
A0A8C7ILG2_ONCKI9.850e-2734.59DExH-box helicase 34 n=1 Tax=Oncorhynchus kisutch ... [more]
F7FBJ8_ORNAN1.810e-2633.59DExH-box helicase 34 n=4 Tax=Monotremata TaxID=925... [more]
A0A4W5JYU1_9TELE6.130e-2634.21DEAH (Asp-Glu-Ala-His) box polypeptide 34 n=2 Tax=... [more]
UPI000E7773F46.600e-2635.60probable ATP-dependent RNA helicase DHX34 isoform ... [more]
A0A6I9NYA0_9TELE8.150e-2633.59probable ATP-dependent RNA helicase DHX34 n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11573contigE-siliculosus-1a_F_contig11573:230..1536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size732
Model size732
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EC3.6.4.13
EggNOG OGsCOG1643@1,KOG0922@2759
EggNOG free text desc.helicase activity
GOsGO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0070035,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000622,GO:2000623
KEGG koko:K20101
Preferred nameDHX34
Seed eggNOG ortholog2880.D8LEZ4
Seed ortholog evalue2.2e-99
Seed ortholog score368.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11573.1025.1prot_E-siliculosus-1a_F_contig11573.1025.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11573 230..1536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927671.9004562-CDS-E-siliculosus-1a_F_contig11573:229..4551622927671.9004562-CDS-E-siliculosus-1a_F_contig11573:229..455Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11573 230..455 +
1696318633.4642458-CDS-E-siliculosus-1a_F_contig11573:229..4551696318633.4642458-CDS-E-siliculosus-1a_F_contig11573:229..455Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11573 230..455 +
1622927671.9157805-CDS-E-siliculosus-1a_F_contig11573:536..6171622927671.9157805-CDS-E-siliculosus-1a_F_contig11573:536..617Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11573 537..617 +
1696318633.4770238-CDS-E-siliculosus-1a_F_contig11573:536..6171696318633.4770238-CDS-E-siliculosus-1a_F_contig11573:536..617Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11573 537..617 +
1622927671.9326894-CDS-E-siliculosus-1a_F_contig11573:1111..15361622927671.9326894-CDS-E-siliculosus-1a_F_contig11573:1111..1536Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11573 1112..1536 +
1696318633.4847069-CDS-E-siliculosus-1a_F_contig11573:1111..15361696318633.4847069-CDS-E-siliculosus-1a_F_contig11573:1111..1536Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11573 1112..1536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11573.1025.1

>prot_E-siliculosus-1a_F_contig11573.1025.1 ID=prot_E-siliculosus-1a_F_contig11573.1025.1|Name=mRNA_E-siliculosus-1a_F_contig11573.1025.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=244bp
GLQEQRLYEITKLRRQFEDLLGSAGLIWLGAAAQRARQARAARGGAGGGP
SKEKLRELKMRREGRKRKVLQVDGGVGEGEVDGEAGLDLSSLEFYMAQDV
GENQLAESSGRRLARRDVAIIKAILCQGLYPQFAVADAGNAGRASNEQQY
VTRPSGGLFMSPSSVLACQDFGIAATAGGSADGMFSSSSRGAAADAGRGD
GLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLV
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mRNA from alignment at E-siliculosus-1a_F_contig11573:230..1536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11573.1025.1 ID=mRNA_E-siliculosus-1a_F_contig11573.1025.1|Name=mRNA_E-siliculosus-1a_F_contig11573.1025.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1307bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11573:230..1536+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCTCCAGGAGCAGCGGCTGTACGAGATAACCAAGCTCAGGCGGCAGTT CGAAGACCTTCTCGGGAGCGCCGGCCTCATCTGGCTCGGTGCCGCCGCCC AGCGGGCGAGACAGGCTCGCGCCGCGCGGGGGGGGGCGGGGGGGGGGCCG TCGAAGGAAAAGCTCCGGGAGCTCAAGATGAGGAGGGAGGGCCGGAAGAG GAAGGTGCTCCAAGTCGATGGGGGGGGTGACGCGGCCGGCAATGCGGGGG AGGGGGGTAGCGGGGGCAAGGACGCGGAGGAGGCGCGGCGGGATCTGAGG GGCGAAGTTGGGGAGGGAGAGGTCGACGGCGAAGCGGGCCTGGACCTCTC GTCTCTGGAGTTTTACATGGCTCAGGATGTCGGTGAGAGTTTTTTTTTAT GCGCATGGGGTTTTGATCGGTATGGACAGCTGAAGGTACTGGATAGAGAT ATCGGAACGGTTTTTATGTGTAGACAACAACAACAACAACAACATGGGTT TTGGGGAAGGCGAGCGACTTCGTTGCACCTTGTAAGGCGCGCGCATAGAA AGGCACAGCAGGACCAGAGTACTACATTGGCGGAGGAGGTATGGCGCGCT CGCTCGCTCGGCTCTTTGTTGAAGATAACGCAATGTCTTTGGACGTCGAG CAACCATCAATTGTCGTCTATATTAGCGCGCGGTGTATGCGCATCCGCCT GCCTCGAATGGATTCGTGCTTGTTCGATGGTGGTACAGGGTTATGACCAG CTGGTTGCTGTATTTGTCTGCAGGTGTAGGAGTACTACACTTCAGTAGTC AAGAACATCGGCGCGTGACTGTACCGCCCATACCGGCGGTAACGCCTCCC TTCTTACCTCCCCGCCCCCACCGTAACAACAGACCAGCTCGCCGAGTCCT CCGGGCGACGCCTCGCTCGAAGAGACGTGGCGATCATCAAGGCCATCCTC TGCCAGGGCCTATACCCTCAGTTCGCGGTCGCCGACGCCGGCAACGCGGG GCGGGCTTCCAACGAGCAGCAGTACGTCACCCGGCCCTCCGGCGGGCTGT TCATGTCCCCTTCGTCCGTCCTCGCCTGTCAAGACTTCGGCATCGCCGCT ACTGCCGGGGGGTCTGCGGATGGTATGTTTTCTTCTTCTTCCCGTGGGGC TGCCGCGGATGCCGGGCGCGGCGACGGGTTGCTGTGCTACGGGCAGCTGA TGGAGACGCAGAGGCCGTTCGTGTCGTCGGTGACGCCGCTGCCGGCTCTG CAGGCGCTGCTGCTGTTCAGCGCCAGGGTCGACACTTCCGAGGATGCCTC GCTGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11573:230..1536+

>mRNA_E-siliculosus-1a_F_contig11573.1025.1 ID=mRNA_E-siliculosus-1a_F_contig11573.1025.1|Name=mRNA_E-siliculosus-1a_F_contig11573.1025.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11573:230..1536+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCTCCAGGAGCAGCGGCTGTACGAGATAACCAAGCTCAGGCGGCAGTT
CGAAGACCTTCTCGGGAGCGCCGGCCTCATCTGGCTCGGTGCCGCCGCCC
AGCGGGCGAGACAGGCTCGCGCCGCGCGGGGGGGGGCGGGGGGGGGGCCG
TCGAAGGAAAAGCTCCGGGAGCTCAAGATGAGGAGGGAGGGCCGGAAGAG
GAAGGTGCTCCAAGTCGATGGGGGGGGGCCTCCAGGAGCAGCGGCTGTAC
GAGATAACCAAGCTCAGGCGGCAGTTCGAAGACCTTCTCGGGAGCGCCGG
CCTCATCTGGCTCGGTGCCGCCGCCCAGCGGGCGAGACAGGCTCGCGCCG
CGCGGGGGGGGGCGGGGGGGGGGCCGTCGAAGGAAAAGCTCCGGGAGCTC
AAGATGAGGAGGGAGGGCCGGAAGAGGAAGGTGCTCCAAGTCGATGGGGG
GGTTGGGGAGGGAGAGGTCGACGGCGAAGCGGGCCTGGACCTCTCGTCTC
TGGAGTTTTACATGGCTCAGGATGTCGGTGAGATTGGGGAGGGAGAGGTC
GACGGCGAAGCGGGCCTGGACCTCTCGTCTCTGGAGTTTTACATGGCTCA
GGATGTCGGTGAGAACCAGCTCGCCGAGTCCTCCGGGCGACGCCTCGCTC
GAAGAGACGTGGCGATCATCAAGGCCATCCTCTGCCAGGGCCTATACCCT
CAGTTCGCGGTCGCCGACGCCGGCAACGCGGGGCGGGCTTCCAACGAGCA
GCAGTACGTCACCCGGCCCTCCGGCGGGCTGTTCATGTCCCCTTCGTCCG
TCCTCGCCTGTCAAGACTTCGGCATCGCCGCTACTGCCGGGGGGTCTGCG
GATGGTATGTTTTCTTCTTCTTCCCGTGGGGCTGCCGCGGATGCCGGGCG
CGGCGACGGGTTGCTGTGCTACGGGCAGCTGATGGAGACGCAGAGGCCGT
TCGTGTCGTCGGTGACGCCGCTGCCGGCTCTGCAGGCGCTGCTGCTGTTC
AGCGCCAGGGTCGACACTTCCGAGGATGCCTCGCTGGTGACCAGCTCGCC
GAGTCCTCCGGGCGACGCCTCGCTCGAAGAGACGTGGCGATCATCAAGGC
CATCCTCTGCCAGGGCCTATACCCTCAGTTCGCGGTCGCCGACGCCGGCA
ACGCGGGGCGGGCTTCCAACGAGCAGCAGTACGTCACCCGGCCCTCCGGC
GGGCTGTTCATGTCCCCTTCGTCCGTCCTCGCCTGTCAAGACTTCGGCAT
CGCCGCTACTGCCGGGGGGTCTGCGGATGGTATGTTTTCTTCTTCTTCCC
GTGGGGCTGCCGCGGATGCCGGGCGCGGCGACGGGTTGCTGTGCTACGGG
CAGCTGATGGAGACGCAGAGGCCGTTCGTGTCGTCGGTGACGCCGCTGCC
GGCTCTGCAGGCGCTGCTGCTGTTCAGCGCCAGGGTCGACACTTCCGAGG
ATGCCTCGCTGGTG
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