mRNA_E-siliculosus-1a_F_contig1157.1021.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1157.1021.1 vs. uniprot
Match: D8LNT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT1_ECTSI) HSP 1 Score: 1800 bits (4663), Expect = 0.000e+0 Identity = 1017/1147 (88.67%), Postives = 1032/1147 (89.97%), Query Frame = 1
Query: 70 MEDSHRVEGFQLRRDANFLLNSDRCLTAVGAPVVLSRNFAGYASLGRPRQGRWGIGEKKEVPFKMASAFLKDRRDICVPVELLAGLIDEQSKLRSSARSWDMPDTVCSDLSWPGSCLENLSAGQELGLSSPAAPLLAHASGPENSHLALLRPRQACRGGPPSTPSGSNRGKGCVDGTADPGGPDVEVGAGSNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYSTTLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPVAADSAAAAPATRGGDDREGEEEELDFDGFEEDEKLVFSRRLTCVTCSPFTPRNAAFLDEELRLFNWHSERGVVTHGAGPLPIAAPPGGPERPNLVAKARRARNADVALDYGSHPRVLWVAGRHRAYRVDLRENPSPAALAPALDPGAYFTGFSDLSVVDGGPGRFGGRGEEPSVRSLAVGRRSAHDVFVAAGLHLACMDARFPKGVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGLTPGGRGSSAAAAGDDLWFVHATSAGDAYGQRLEMRRVGGTGSGEAGGKKAVPASPRSALLSDRIQSMLPCGDVCLDPDAASYRRSPRPPAFQKSSGAVAGGVATEAAGAGEKPPRRNVRGNDDGKDGVTTGGNSSNDSSGSDDRRGSGRQGRPSRKDQRSHGGSRGAGEDCRDGGDSESXXXXXXXXXXXXXRSXXXXGRXXXXXXXXXPRRXXXXXXEGRRDSGSSEEECRANSEGTALSPRKPPARHGATPRKRTRTREGRGAASSNXXXXXNSVEGGGVGGKGRPGGPKAAVEYFPVNAGALCAAVEKVPENALCGHRYLAPLVDLVSTGKGEAGECGGDKSAEGSSVRGAVSEAAESRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFPAD-PPARRLENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGRVRPRMEDATIMVDIARAVLAWGKPFRDVETAWRPAAVGQGYSVMTSSLPGPLPRVSAPVLCSACEVLKGEPSPFLRPGAVGPPLAVDVSVEDVRWLKDEWDSSW 3507
MED HRVEGFQLRRDANFLLNSDRCLTAVGAPVVLSRNFAGYASLGRPRQGRWGIGEKKEVPFKMASAFLKDRRDICVPVELLAGLIDEQSKLRSSARSWDMPDTVCSDLSWPGSCLENLSAGQELGLSSPAAPLLAHASGPENSHLALLRPRQACRGG PSTPSG N GKGCVDGTADPGGPDVE GAGSNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYS TLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPVAADSAA REGEEEE DFDGFEE EKLVFSRRLTCV CSPFTP+NAAFLDEELRLF+WHSERG VTHGAGPLPI APPG PERP+L AK RRARNADVALDYGSHPRVLWVAGRHRAYRVDLRENPSPAALAPALDPG YFTGFSDLS+VDGGPGRFGGRGEEPSVRSLAVGRRSAHDVFVAAGLHLACMDARFPK VVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGL PGGRGSSAAA GD LWFVHATSAGDAYGQRLEMRRVGGTGSGEAGGKKAVPASPRSALLSDRIQSMLPCGDVCLDPDAASYRR PRPPA +KSSGAVAGGVATE AGAGEKPPRR VRG+DDGKDGV TGGNSSNDSSG +RSH AGEDCRDGGDSES XXXXXXX S GR PRRXXXXXX LSPRKPPARHG TPRKRTRTREGRGA XXXXXN EGG VGGKGRPGGPKAAVEYFPVNAGALCAAVEKVPENA+CGHRYLAPLV LVSTGKGE+G+CGGDKSAEGSS+RGA SEAAE RERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFPAD PP RRL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDGR RPR+EDATIMVDIARAVLAWGKPFR+VETAWRPAAVGQGYSVMTS LPGPLPRVSAPVLCSA EVLKGEPSPFLRPG+VGPPLAVDVSVEDVRWLKDEWDSSW
Sbjct: 1 MEDIHRVEGFQLRRDANFLLNSDRCLTAVGAPVVLSRNFAGYASLGRPRQGRWGIGEKKEVPFKMASAFLKDRRDICVPVELLAGLIDEQSKLRSSARSWDMPDTVCSDLSWPGSCLENLSAGQELGLSSPAAPLLAHASGPENSHLALLRPRQACRGGSPSTPSGRNSGKGCVDGTADPGGPDVEAGAGSNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYSATLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPVAADSAAXXXXXXXXXXREGEEEESDFDGFEEGEKLVFSRRLTCVACSPFTPKNAAFLDEELRLFSWHSERGAVTHGAGPLPIVAPPGAPERPSLAAKVRRARNADVALDYGSHPRVLWVAGRHRAYRVDLRENPSPAALAPALDPGVYFTGFSDLSIVDGGPGRFGGRGEEPSVRSLAVGRRSAHDVFVAAGLHLACMDARFPKSVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGLAPGGRGSSAAAVGDGLWFVHATSAGDAYGQRLEMRRVGGTGSGEAGGKKAVPASPRSALLSDRIQSMLPCGDVCLDPDAASYRRPPRPPASKKSSGAVAGGVATEVAGAGEKPPRRKVRGHDDGKDGVATGGNSSNDSSGXXXXXXXXXXXXXXXXXRRSHXXXXXAGEDCRDGGDSESSGXXXXXXXDGPEHSESEAGRSGTGD----PRRXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPRKPPARHGETPRKRTRTREGRGATXXXXXXXXNRDEGGSVGGKGRPGGPKAAVEYFPVNAGALCAAVEKVPENAICGHRYLAPLVALVSTGKGESGDCGGDKSAEGSSIRGAASEAAERRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFPADDPPVRRLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GDGRARPRVEDATIMVDIARAVLAWGKPFRNVETAWRPAAVGQGYSVMTSRLPGPLPRVSAPVLCSAREVLKGEPSPFLRPGSVGPPLAVDVSVEDVRWLKDEWDSSW 1142
BLAST of mRNA_E-siliculosus-1a_F_contig1157.1021.1 vs. uniprot
Match: A0A6H5L1M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M6_9PHAE) HSP 1 Score: 1602 bits (4147), Expect = 0.000e+0 Identity = 913/1053 (86.70%), Postives = 934/1053 (88.70%), Query Frame = 1
Query: 373 MPDTVCSDLSWPGSCLENLSAGQELGLSSPAAPLLAHASGPENSHLALLRPRQACRGGPPSTPSGSNRGKGCVDGTADPGGPDVEVGAGSNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYSTTLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPVAADSAAAAPATRGGDDREGEEEELDFDGFEEDEKLVFSRRLTCVTCSPFTPRNAAFLDEELRLFNWHSERGVVTHGAGPLPIAAPPGGPERPNLVAKARRARNADVALDYGSHPRVLWVAGRHRAYRVDLRENPSPAALAPALDPGAYFTGFSDLSVVDGGPGRFGGRGEEPSVRSLAVGRRSAHDVFVAAGLHLACMDARFPKGVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGLTPGGRGSSAAAAGDDLWFVHATSAGDAYGQRLEMRRVGGTGSGEAGGKKAVPASPRSALLSDRIQSM-----LPCGDVCLDPDAASYRRSPRPPAFQKSSGAVAGGVATEAAGAGEKPPRRNVRGNDDGKDGVTTGGNSSNDSSGSDDRRGSGRQGRPSRKDQRSHGGSRGAGEDCRDGGDSESXXXXXXXXXXXXXRSXXXXGRXXXXXXXXXPRRXXXXXXEGRRDSGSSEEEC--RANSEGTALSPRKPPARHGATPRKRTRTREGRGAASSNXXXXXNSVEGGGVGGKGRPGGPKAAVEYFPVNAGALCAAVEKVPENALCGHRYLAPLVDLVSTGKGEAGECGGDKSAEGSSVRGAVSEAAESRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFPADPPARRLENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GDGRVRPRMEDATIMVDIARAVLAWGKPFRDVETAWRPAAVGQGYSVMTSSLPGPLPRVSAPVLCSACEVLKGEPSPFLRPGAVGPPLAVDVSVEDVRWLKDEWDSSW 3507
MPDTVCSDLSWPGSCLENLSAGQELGLSS A PLLAHASGPENSHLALLRPRQACRG PSTPSGSN GKGC DGTADP GPDVE GAGSNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYS TLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLP AA+SAAAAPA RGGD REGEEE+LDFDGFEEDEKLVFSRRLTCV CSPFTP+NAAFLDEELRLF+WH ERG V HGAGPLPIAAPPGGPERP+L AKARRARNADVALDYGSHPRVLWVAGRHRAYRVDLRE PSPAALAPALDPG YFTGFSDLSVVDGGPGRFGGRGEEP VRSL VGRRSAHD+FVAAGLHLACMD+RFPKGVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGL PGGRGSSAAAAGDDLWFVHATSAGDAYGQRLEMRRVGG G GE GGKKAVPASPRSALLSDRIQS+ LPCGDVCLDPDAASY RSPRPPA + VATE AGAG KPPRRN RGNDDGKDGV TGG+SSN+SSGSDD RGSGRQG PSRKD+RSHGG RGAGED R XXXXXXXX S G PR +GRRDSGSSE RA+SE ALSPR PP RH TPRKRTRTREGRGAA S+ NS EGG + GKG PG PKAAVEYFPVNAGAL A VEKVPENALC HRYLAPLVDLVSTGK EAG+CGGDKSAEGSS+RGA SEAAE RERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEF ADPPARRL+NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDGRVRPRMED TIMVDIARAVLAWGKPFR+VETAWRPAAVGQGYS MTS LP P PRVS+PVLCSA EVLKGEPSPFLRPGAVGPPLAVDVSVEDVRWLKDEWDSSW
Sbjct: 1 MPDTVCSDLSWPGSCLENLSAGQELGLSSLAPPLLAHASGPENSHLALLRPRQACRGRSPSTPSGSNNGKGCADGTADPRGPDVETGAGSNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYSATLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPAAAESAAAAPAARGGDGREGEEEQLDFDGFEEDEKLVFSRRLTCVACSPFTPKNAAFLDEELRLFSWHPERGTVRHGAGPLPIAAPPGGPERPSLAAKARRARNADVALDYGSHPRVLWVAGRHRAYRVDLREKPSPAALAPALDPGVYFTGFSDLSVVDGGPGRFGGRGEEPRVRSLTVGRRSAHDIFVAAGLHLACMDSRFPKGVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGLAPGGRGSSAAAAGDDLWFVHATSAGDAYGQRLEMRRVGGGGVGEYGGKKAVPASPRSALLSDRIQSIHKDCRLPCGDVCLDPDAASYHRSPRPPASKXXXXXXXXXVATEVAGAGGKPPRRNGRGNDDGKDGVATGGDSSNESSGSDDGRGSGRQGAPSRKDKRSHGGRRGAGEDRRXXXXXXXXXXXXXXXGNRPECSESEAGHSDQGSGTGDPRWRRGHRDDGRRDSGSSEXXXNGRASSEEAALSPRNPPLRHDETPRKRTRTREGRGAAPSDDGDGNNSDEGGSIEGKGGPGDPKAAVEYFPVNAGALRATVEKVPENALCSHRYLAPLVDLVSTGKEEAGKCGGDKSAEGSSIRGAGSEAAERRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFLADPPARRLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGRVRPRMEDPTIMVDIARAVLAWGKPFRNVETAWRPAAVGQGYSFMTSRLPEPTPRVSSPVLCSAREVLKGEPSPFLRPGAVGPPLAVDVSVEDVRWLKDEWDSSW 1053 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1157.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1157.1021.1 >prot_E-siliculosus-1a_F_contig1157.1021.1 ID=prot_E-siliculosus-1a_F_contig1157.1021.1|Name=mRNA_E-siliculosus-1a_F_contig1157.1021.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1147bp MEDSHRVEGFQLRRDANFLLNSDRCLTAVGAPVVLSRNFAGYASLGRPRQback to top mRNA from alignment at E-siliculosus-1a_F_contig1157:15302..24691- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1157.1021.1 ID=mRNA_E-siliculosus-1a_F_contig1157.1021.1|Name=mRNA_E-siliculosus-1a_F_contig1157.1021.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1157:15302..24691- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1157:15302..24691- >mRNA_E-siliculosus-1a_F_contig1157.1021.1 ID=mRNA_E-siliculosus-1a_F_contig1157.1021.1|Name=mRNA_E-siliculosus-1a_F_contig1157.1021.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6882bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1157:15302..24691- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |