mRNA_E-siliculosus-1a_F_contig1157.1020.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1157.1020.1
Unique NamemRNA_E-siliculosus-1a_F_contig1157.1020.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1157.1020.1 vs. uniprot
Match: A0A6T8I8D6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8I8D6_HEMAN)

HSP 1 Score: 140 bits (352), Expect = 7.970e-40
Identity = 75/145 (51.72%), Postives = 90/145 (62.07%), Query Frame = 1 
Query:    4 VGRVLREVNTSNQWSTLAGVLTKVNKRLPTEQQVDARTLAGLLTSEPAAELARNGVWTTNFGAKYMPIVVVSRAYAQ--KVAQGEEQGRCSCGEGGRSGSGSSRFFGSQDYNAGRHALEASAHNSGCLCWTPPTTGHLHSWRRGF 432
            +G  L    TSNQWS L GV TKVNK+LP + QV  R L   L     AEL ++G+W T+FGAKYMPI+VV+ A  +  ++  G E   CSCG   +      RF  S  YNAGRHAL AS+H + C  WTPP T HLHSWRRGF
Sbjct:    5 LGHALASTGTSNQWSMLDGVTTKVNKKLPKDMQVTPRQLDAFLQQVGDAELRKHGIWRTSFGAKYMPIIVVNPALGRILRLCNGAEP-PCSCGALNQR---EDRFLSSHAYNAGRHALVASSHKASCGQWTPPQTSHLHSWRRGF 145
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BLAST of mRNA_E-siliculosus-1a_F_contig1157.1020.1 vs. uniprot
Match: A0A061S7L3_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S7L3_9CHLO)

HSP 1 Score: 123 bits (308), Expect = 7.360e-33
Identity = 67/144 (46.53%), Postives = 90/144 (62.50%), Query Frame = 1 
Query:    1 PVGRVLREVNTSNQWSTLAGVLTKVNKRLPTEQQVDARTLAGLLTSEPAAELARNGVWTTNFGAKYMPIVVVSRAYAQKVAQGEEQGRCSCGEGGRSGSGSSRFFGSQDYNAGRHALEASAHNSGCLCWTPPTTGHLHSWRRGF 432
            PV   L+ ++T NQWS L+ ++ K+NKR+ T   V  + +A  L   P+  L +NGVW  +FG+KY PIV V+ AY +  +  E+   CSC    R    S+ +F SQ YNAGRHA  AS H + C  WTPP+TGHLHSWRRG+
Sbjct:   35 PVVDSLKTISTRNQWSLLSTLVKKLNKRIATPMTV--KEVAKHLLLVPSEVLRKNGVWVHSFGSKYEPIVCVNPAYGRVNSSEEDIPACSCKGIDRD---SNVYFSSQAYNAGRHACTASLHIASCSQWTPPSTGHLHSWRRGY 173
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BLAST of mRNA_E-siliculosus-1a_F_contig1157.1020.1 vs. uniprot
Match: A0A7S1X7L8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X7L8_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 5.090e-21
Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 1 
Query:    4 VGRVLREVNTSNQWSTLAGVLTKVNKRLPTEQQVDARTLAGLLTSEPAAELARNGVWTTNFGAKYMPIVVVSRAYAQKVAQG--EEQGRCSC---GEGGRSGSGSSRFFGSQDYNAGRHALEASAHNSGCLCWTPPTTGHLHSWRRGFD 435
            +G+ L  V TSNQWS L GV  KV +  PT++  D       L++     L  +G+W    G  +  I+  +  Y +   QG  EE   CSC     G      + ++FGS DYNAGRHA   + H S C  W PPT+ HLHSWRRG++
Sbjct:    5 IGQSLLNVRTSNQWSLLDGVARKVKR--PTKEVHD------FLSTVDDETLRVHGIWKHRVGKCF--IICTNPGY-RLALQGAAEEADECSCCCESSGSIESRAAKQYFGSFDYNAGRHAQHTTGHKSTCPFWAPPTSSHLHSWRRGYE 142
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BLAST of mRNA_E-siliculosus-1a_F_contig1157.1020.1 vs. uniprot
Match: A0A1Q9EC58_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EC58_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 3.040e-12
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:  307 RFFGSQDYNAGRHALEASAHNSGCLCWTPPTTGHLHSWRRGFD 435
            R+F SQ YNAGRH+ EAS H + C  W PPTTGHLHSWRR FD
Sbjct:  262 RYFNSQAYNAGRHSHEASGHVASCAQWQPPTTGHLHSWRRAFD 304
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BLAST of mRNA_E-siliculosus-1a_F_contig1157.1020.1 vs. uniprot
Match: A0A7S1Z277_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z277_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.740e-11
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  301 SSRFFGSQDYNAGRHALEASAHNSGCLCWTPPTTGHLHSWRRGFD 435
            S R+F S DYNAGRH    S H++ C  W PP++GHLHSWRRG++
Sbjct:  198 SKRYFNSLDYNAGRHGETTSKHHASCAAWNPPSSGHLHSWRRGYN 242
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1157.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6T8I8D6_HEMAN7.970e-4051.72Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A061S7L3_9CHLO7.360e-3346.53Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]
A0A7S1X7L8_9CHLO5.090e-2138.93Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A1Q9EC58_SYMMI3.040e-1269.77Uncharacterized protein n=1 Tax=Symbiodinium micro... [more]
A0A7S1Z277_9STRA3.740e-1157.78Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1157contigE-siliculosus-1a_F_contig1157:12395..12832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size438
Model size438
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927671.1908855-CDS-E-siliculosus-1a_F_contig1157:12394..128321622927671.1908855-CDS-E-siliculosus-1a_F_contig1157:12394..12832Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1157 12395..12832 +
1696318633.2562194-CDS-E-siliculosus-1a_F_contig1157:12394..128321696318633.2562194-CDS-E-siliculosus-1a_F_contig1157:12394..12832Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1157 12395..12832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1157.1020.1prot_E-siliculosus-1a_F_contig1157.1020.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1157 12395..12832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1157.1020.1

>prot_E-siliculosus-1a_F_contig1157.1020.1 ID=prot_E-siliculosus-1a_F_contig1157.1020.1|Name=mRNA_E-siliculosus-1a_F_contig1157.1020.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=146bp
PVGRVLREVNTSNQWSTLAGVLTKVNKRLPTEQQVDARTLAGLLTSEPAA
ELARNGVWTTNFGAKYMPIVVVSRAYAQKVAQGEEQGRCSCGEGGRSGSG
SSRFFGSQDYNAGRHALEASAHNSGCLCWTPPTTGHLHSWRRGFD*
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mRNA from alignment at E-siliculosus-1a_F_contig1157:12395..12832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1157.1020.1 ID=mRNA_E-siliculosus-1a_F_contig1157.1020.1|Name=mRNA_E-siliculosus-1a_F_contig1157.1020.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1157:12395..12832+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGTCGGACGCGTACTGCGCGAAGTCAACACGTCCAACCAGTGGTCGAC
ACTCGCAGGCGTCCTCACCAAGGTGAACAAAAGGTTGCCCACAGAGCAGC
AGGTGGACGCGAGGACCCTTGCCGGGCTCTTGACCTCCGAGCCTGCCGCG
GAGCTCGCGAGGAACGGCGTGTGGACGACAAACTTCGGCGCCAAGTACAT
GCCAATCGTTGTAGTCAGCCGCGCGTACGCTCAGAAGGTGGCCCAAGGCG
AGGAGCAAGGCCGCTGCTCGTGCGGCGAAGGCGGGCGGAGTGGCTCAGGC
TCGTCCCGCTTCTTTGGGTCCCAGGACTACAACGCCGGCAGGCATGCTCT
GGAGGCGAGCGCCCACAACTCCGGTTGCCTCTGCTGGACACCACCAACTA
CAGGCCACCTACACAGCTGGAGAAGGGGGTTCGACTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1157:12395..12832+

>mRNA_E-siliculosus-1a_F_contig1157.1020.1 ID=mRNA_E-siliculosus-1a_F_contig1157.1020.1|Name=mRNA_E-siliculosus-1a_F_contig1157.1020.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1157:12395..12832+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGTCGGACGCGTACTGCGCGAAGTCAACACGTCCAACCAGTGGTCGAC
ACTCGCAGGCGTCCTCACCAAGGTGAACAAAAGGTTGCCCACAGAGCAGC
AGGTGGACGCGAGGACCCTTGCCGGGCTCTTGACCTCCGAGCCTGCCGCG
GAGCTCGCGAGGAACGGCGTGTGGACGACAAACTTCGGCGCCAAGTACAT
GCCAATCGTTGTAGTCAGCCGCGCGTACGCTCAGAAGGTGGCCCAAGGCG
AGGAGCAAGGCCGCTGCTCGTGCGGCGAAGGCGGGCGGAGTGGCTCAGGC
TCGTCCCGCTTCTTTGGGTCCCAGGACTACAACGCCGGCAGGCATGCTCT
GGAGGCGAGCGCCCACAACTCCGGTTGCCTCTGCTGGACACCACCAACTA
CAGGCCACCTACACAGCTGGAGAAGGGGGTTCGACTAGCCCGTCGGACGC
GTACTGCGCGAAGTCAACACGTCCAACCAGTGGTCGACACTCGCAGGCGT
CCTCACCAAGGTGAACAAAAGGTTGCCCACAGAGCAGCAGGTGGACGCGA
GGACCCTTGCCGGGCTCTTGACCTCCGAGCCTGCCGCGGAGCTCGCGAGG
AACGGCGTGTGGACGACAAACTTCGGCGCCAAGTACATGCCAATCGTTGT
AGTCAGCCGCGCGTACGCTCAGAAGGTGGCCCAAGGCGAGGAGCAAGGCC
GCTGCTCGTGCGGCGAAGGCGGGCGGAGTGGCTCAGGCTCGTCCCGCTTC
TTTGGGTCCCAGGACTACAACGCCGGCAGGCATGCTCTGGAGGCGAGCGC
CCACAACTCCGGTTGCCTCTGCTGGACACCACCAACTACAGGCCACCTAC
ACAGCTGGAGAAGGGGGTTCGACTAG
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