mRNA_E-siliculosus-1a_F_contig1152.996.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: A0A6H5KRV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV7_9PHAE) HSP 1 Score: 867 bits (2240), Expect = 9.060e-295 Identity = 495/514 (96.30%), Postives = 500/514 (97.28%), Query Frame = 2
Query: 497 SLLVSVTIEDLAPAVRTRLDDVLQEGEDDEMRQDTRLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGPDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRRXXXXXXXXXXXXXXXXXXXXXXPGGRPAAXXXXXXXXXXXXXXXXGMXXXXXXXXXMYGAHPFTGAPHMSPYGYMDPSMAGAAPFADFYGGMYGHAPPMPLFNAYGQPMATFIPPHMPMYQPGTTEMLPASVQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQPRPQGGSALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKSGAPPPPGLAQR 2038
SLLVSVTIEDLAPAVRTRLDDVLQEGEDDEMRQD RLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGPDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILR XXXXXXXXXXXXXXXXXXXXXXPGGRPAAXXXXXXXXXXXXX X XXXXXXXXXMYGAHPF G P+MSPYGYMDPSM G+ PFA+FYGGMYGHAP MPLFNAYGQPMATFIPPH+PMYQ GTTEMLPAS+QLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKR REYNDFWAKQQQPRPQG SALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKSGAPPPPGLAQR
Sbjct: 132 SLLVSVTIEDLAPAVRTRLDDVLQEGEDDEMRQDARLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGPDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRXXXXXXXXXXXXXXXXXXXXXXXPGGRPAAXXXXXXXXXXXXXGMX-XXXXXXXXXXMYGAHPFAGVPYMSPYGYMDPSMTGSVPFAEFYGGMYGHAPSMPLFNAYGQPMATFIPPHIPMYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKRYREYNDFWAKQQQPRPQGCSALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKSGAPPPPGLAQR 644
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: D8LG90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG90_ECTSI) HSP 1 Score: 744 bits (1920), Expect = 4.370e-251 Identity = 393/484 (81.20%), Postives = 395/484 (81.61%), Query Frame = 2
Query: 587 MRQDTRLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGPDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRRXXXXXXXXXXXXXXXXXXXXXXPGGRPAAXXXXXXXXXXXXXXXXGMXXXXXXXXXMYGAHPFTGAPHMSPYGYMDPSMAGAAPFADFYGGMYGHAPPMPLFNAYGQPMATFIPPHMPMYQPGTTEMLPASVQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQPRPQGGSALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKSGAPPPPGLAQR 2038
MRQDTRLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAG DGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRR DFYGGMYGHAPPMPLFNAYGQPMATFIPPHMPMYQ GTTEMLPAS+QLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYR FVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQPRPQGGSAL+ERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKSGAPPPPGLAQR
Sbjct: 1 MRQDTRLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGTDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRRHHQ-----------------------------------------------------------------------------------DFYGGMYGHAPPMPLFNAYGQPMATFIPPHMPMYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRGFVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQPRPQGGSALLERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKSGAPPPPGLAQR 401
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: A0A7S1EQC1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQC1_9RHOD) HSP 1 Score: 100 bits (249), Expect = 1.260e-17 Identity = 109/423 (25.77%), Postives = 166/423 (39.24%), Query Frame = 2
Query: 836 LSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRRXXXXXXXXXXXXXXXXXXXXXXPGGRPAAXXXXXXXXXXXXXXXXGMXXXXXXXXXMYGAHPFTGAPHMSPYGYMDPSMAGAAPFADFYGGMYGHAPPMPLFNAYGQPMAT------FIPPHMPMYQ--------PGTTEMLPASVQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQP--------RPQGGSALMERIAGAPAKV---------QAGITDLIEKGIAMEW----DIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRY 1999
LSP + + L L+ G AD+D R + F L +K A A+D+ D ++IRN+ AF+MSI +R G PA PF G+ + PY + + P G PP P + P A+ F P P P LP +V L Q+ A+G CH E DDR + L + E A++A+EEF S E +RK SA+ MG+ RK Y+ A G SG P L SP G Y + + R + S+ ++ ++ + V A D +++ + W D+D R +A ++E + + ++E D +R+RN SAY+MGL ++Y
Sbjct: 202 LSPEVQNALRALFTEGVCDPADIDTRSVEFLSGLPDKIALTAIDDIHHRDFSTIRNRPAFIMSIFKRVANPQRDAV---------------GGPA---------------------------------PFVGS--VQPY---SSGFSRSIPRPPPRG--MRQLPPEPTYVRPSGPRASEHNPDVFRQPAAPXXXXXXAATVPPEALAHLPTAVGEGLQQVFASGVCHPSEFDDRAMEILVALKEPEAVRALEEFASVEPGRVRKPSAFWMGLARK----YKGLGASGVSG--PQNLNSPSSRGYGNQYGYESYDRRSAADEHAYVSGHRQRHYSSQIDSLSASRGPVALNRPPEFRHALAADRLQRIFSETWLSPNDLDDRAIDAIKRMSESEEMNVVDEILRTDPSRVRNISAYIMGLYRKY 563
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: A0A1X6PIJ9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIJ9_PORUM) HSP 1 Score: 89.7 bits (221), Expect = 3.380e-14 Identity = 69/258 (26.74%), Postives = 105/258 (40.70%), Query Frame = 2
Query: 1400 PGTTEMLPASVQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPS----------PYEA--GLKRIREYN-----DFWAKQQQPR-------------------------------------PQGGSALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKSGA 2011
P LP V L ++ ATG CH + DDR L E+P H A++A+ EF + +R SA+ MG+ RKH ++G G P G+P+ PY A G + + D+ QQP GG A G ++V A + L+ + D+D R A L E+ + A++E A+ + +R+RN SAY+MGL ++Y S +
Sbjct: 366 PSALAHLPGPVGEGLQRVFATGVCHPSQFDDRAMDILVELPTHAAVRALSEFAAVPPSRVRNPSAFWMGLARKHKSAIAA-ASLGGQGTPQGGMPNMGYGPPPMAQPYGAPQGYGQPMHHQPPPSYDYHQVHQQPAYGGYEYGGQYGHGGYGPPPMVSGXXXXYDSRXXPVSAGMGGVAPAYGAQGGGSRVAARVDALVAARVVRPGDVDARAIEALGRLREQDALAALDELAAAEPSRVRNPSAYVMGLARKYASAS 622
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: R7QVV3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QVV3_CHOCR) HSP 1 Score: 82.8 bits (203), Expect = 3.900e-12 Identity = 67/239 (28.03%), Postives = 105/239 (43.93%), Query Frame = 2
Query: 1418 LPASVQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQPRPQGGSALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKSGAPPPPGLAQR*S*PDES*W*GYPD*RRVFTAAALGACWLTVG 2134
LP +V L ++ +G CH + DDR L ++ E A++A+ EF + E +R SA+ MG+ RK+ + R A G GP + +PS Y +G P G G+ + + + +L G + +D R A L E+ G+ + E + R+RN SAY+MGL K++ +G L+QR S G T +A GA + T G
Sbjct: 288 LPPTVSDALQRVFTSGVCHPSQFDDRAMDILVDLAEPDAVRALSEFAAMEPGRVRNPSAFWMGLARKYKGHSR---APGGRMGPDS-VPSNYGSGFD----------------PSDGYGRSTSAQGSFSALDQRLDELANNGTLLRNVLDDRALEALRRLPEQDGLAVLAELP--EPARVRNPSAYVMGLCKKFANGEAR--SLSQRSSTYSAGGGYGXXXXXXXXTTSAYGAPYATGG 502
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: A0A7S3XFS6_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XFS6_9CHLO) HSP 1 Score: 79.7 bits (195), Expect = 4.130e-11 Identity = 55/171 (32.16%), Postives = 91/171 (53.22%), Query Frame = 2
Query: 527 LAPAVRTRLDDVLQEGEDDEMRQDTRLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGR-MGAGPDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRR 1036
L AV+ +L+++ G D + + L +++E AL+ L+++ A T V RNK AYL G + + ++ M T P + + +G+ ++ L++LYE+G ++ D+D+RC F R L E A AA+ E G S + +IRNKSAF+MS+ RR
Sbjct: 225 LGAAVQAKLNEIYSSGACAPEDIDVKCLQDLQQIEEDVALSVLSQF-AGYDLTQV--RNKSAYLSGAITRVRRE------------MTTNPEKYDKDIPRAENGMIQTVYDELQRLYETGHLRYGDIDERCTDFLRGLPESIALAALQEVGSSSLDNIRNKSAFVMSVCRR 380
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: A0A7S1DEU8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DEU8_HEMAN) HSP 1 Score: 75.5 bits (184), Expect = 1.270e-10 Identity = 53/175 (30.29%), Postives = 94/175 (53.71%), Query Frame = 2
Query: 527 LAPAVRTRLDDVLQEGEDDEMRQDTRLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGPDG-----LSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRR 1036
L P V +++ ++ G+ D ++ + L + DE + + L+ + A ++T IRNK A++ I+R+Y+ R G GG+ P++ G A L S+ +RLE +YESG +Q+ D+D RCM + L E A A+ + ++++++I +KS F + ILRR
Sbjct: 54 LKPKVLEKMEALIAAGKCTREDLDHKIRDSLADFDEDKGVEILDNFGDANTDT---IRNKAAFIAAIIRRYRSEAR---GVPPVGGIGMMPHSEGAGSAAAPAAINGELVQSVNARLESIYESGKLQRGDLDDRCMEQLKALPEHLALEALQKLNEANLSTINSKSGFFVGILRR 222
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: A0A7S2LAC6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAC6_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 6.200e-10 Identity = 50/147 (34.01%), Postives = 77/147 (52.38%), Query Frame = 2
Query: 602 RLVNFLGEVDEAQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGPDG--LSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRR 1036
RL L + Q AL+EY+ AV+ +IRN+ AYL G+L++Y +GR+G P G L+P++ R+ +L +SGF + D+++R + + L EKEA AAMDE + +IRN ++ M IL R
Sbjct: 290 RLQIMLNGLPVQQMKEALSEYNDAVTTKGSSIRNRQAYLHGVLKRYM-------------------TILGRVGGTPMGEALTPAVKERMTRLVDSGFCSQEDLNERVLSKIKMLPEKEALAAMDELATAKRDAIRNFGSYFMGILNR 417
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: D8LG91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG91_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 2.800e-9 Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 3
Query: 3168 FSSLGPARSVRRRLVSSRRSPDFLLPRVIPKRTLRDAT 3281
++SLGP RSVRRRLVSSRRSP+FLLPRVIPKRTL D T
Sbjct: 17 YASLGPVRSVRRRLVSSRRSPEFLLPRVIPKRTLCDVT 54
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Match: A0A7S0LZI5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZI5_9CRYP) HSP 1 Score: 70.9 bits (172), Expect = 8.830e-9 Identity = 52/227 (22.91%), Postives = 96/227 (42.29%), Query Frame = 2
Query: 1334 PLFNAYGQPMATFIPPHMPM---YQPGTTEMLPASVQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQPRPQGGSALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFLGLTEEQGVEAIEEFASCDMTRIRNKSAYLMGLLKRYKS 2005
PL NA P P + + + T M+P VQ RL+ + A+G E+D RC + LR +PEH+ L+ + +F + +I + + MG+I++ +R+ VA + +G P VQ + L + ++D + L E VE +++F +++ IRNK+A+ +G++KR+++
Sbjct: 165 PLGNALSAPSMGAYGPGLGLSSSFSGDTAGMIPG-VQARLEAIFASGKVRREELDQRCLEQLRSLPEHVGLEVVGKFAEADLSSINSKAGFFMGIIKR----FREQVAASDP------------------------------------NVTASAFSGLPFVVQTKLEALFSTRLVGRNELDAKCYMELRQLPEPIAVEVMDKFCETNLSDIRNKTAFFLGIVKRFRT 350 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1152.996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1152.996.1 >prot_E-siliculosus-1a_F_contig1152.996.1 ID=prot_E-siliculosus-1a_F_contig1152.996.1|Name=mRNA_E-siliculosus-1a_F_contig1152.996.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=649bp MSEEAPPVMVAADGEKAADEATPAIEPSAASDAATTSSAQQQQQDVADGDback to top mRNA from alignment at E-siliculosus-1a_F_contig1152:7013..20788+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1152.996.1 ID=mRNA_E-siliculosus-1a_F_contig1152.996.1|Name=mRNA_E-siliculosus-1a_F_contig1152.996.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13776bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1152:7013..20788+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1152:7013..20788+ >mRNA_E-siliculosus-1a_F_contig1152.996.1 ID=mRNA_E-siliculosus-1a_F_contig1152.996.1|Name=mRNA_E-siliculosus-1a_F_contig1152.996.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1152:7013..20788+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |