mRNA_E-siliculosus-1a_F_contig1152.995.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1152.995.1
Unique NamemRNA_E-siliculosus-1a_F_contig1152.995.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1152.995.1 vs. uniprot
Match: D8LG89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG89_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 5.560e-79
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 1 
Query:  250 MAGIDCCARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVDVEDPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLGREDSGYGSLTYLSQMPLMPQGYSRSDNYVDG 630
            M GIDCCARVCIGLSIPGIIFLIIIGIMFDKQGFYTSV+V+DPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLGREDSGYGSLTYLSQMPLMPQGYSRSDNYVDG
Sbjct:    1 MGGIDCCARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVEVDDPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLGREDSGYGSLTYLSQMPLMPQGYSRSDNYVDG 127
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BLAST of mRNA_E-siliculosus-1a_F_contig1152.995.1 vs. uniprot
Match: A0A7S3JPM2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPM2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.880e-6
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:  268 CARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVDVEDPTAAASECYFAALLYVVAIGVSLGGICYDKNR 471
            CA+ C   S  G++FLI+IGI+  K+  Y   D++ P  AAS+C+ AA +Y+  I +S+G +  DK R
Sbjct:   17 CAKCCAIFSSTGVVFLILIGIILQKEPLYVR-DIDQPKKAASQCFGAAGIYIACIVISIGVLVSDKVR 83
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BLAST of mRNA_E-siliculosus-1a_F_contig1152.995.1 vs. uniprot
Match: A0A836CCG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.180e-5
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:  250 MAGIDCCARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVDV---EDPTAAASECYFAALLYVVAIGVSLGGICYDKNR 471
            M  +  C++ C  LS  GI+FL I+GI+F++Q F+T+ +V   +    AA   Y+ A +Y + + +SL G+ Y K R
Sbjct:    1 MCSLPACSQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAAEAVYWGAFIYFITLLMSLYGMWYSKRR 77
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1152.995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG89_ECTSI5.560e-7997.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3JPM2_9STRA2.880e-641.18Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836CCG9_9STRA2.180e-536.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1152contigE-siliculosus-1a_F_contig1152:977..6130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size384
Model size1760
Exons4
Ec32 orthologEc-17_004170.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1152.995.1prot_E-siliculosus-1a_F_contig1152.995.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1152 1226..5003 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927666.973278-UTR-E-siliculosus-1a_F_contig1152:976..12251622927666.973278-UTR-E-siliculosus-1a_F_contig1152:976..1225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1152 977..1225 +
1696318631.5005975-UTR-E-siliculosus-1a_F_contig1152:976..12251696318631.5005975-UTR-E-siliculosus-1a_F_contig1152:976..1225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1152 977..1225 +
1622927667.0503933-UTR-E-siliculosus-1a_F_contig1152:5003..61301622927667.0503933-UTR-E-siliculosus-1a_F_contig1152:5003..6130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1152 5004..6130 +
1696318631.5382135-UTR-E-siliculosus-1a_F_contig1152:5003..61301696318631.5382135-UTR-E-siliculosus-1a_F_contig1152:5003..6130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1152 5004..6130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927666.9923599-CDS-E-siliculosus-1a_F_contig1152:1225..12441622927666.9923599-CDS-E-siliculosus-1a_F_contig1152:1225..1244Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1152 1226..1244 +
1696318631.5081618-CDS-E-siliculosus-1a_F_contig1152:1225..12441696318631.5081618-CDS-E-siliculosus-1a_F_contig1152:1225..1244Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1152 1226..1244 +
1622927667.0050697-CDS-E-siliculosus-1a_F_contig1152:3343..34841622927667.0050697-CDS-E-siliculosus-1a_F_contig1152:3343..3484Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1152 3344..3484 +
1696318631.515689-CDS-E-siliculosus-1a_F_contig1152:3343..34841696318631.515689-CDS-E-siliculosus-1a_F_contig1152:3343..3484Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1152 3344..3484 +
1622927667.020625-CDS-E-siliculosus-1a_F_contig1152:4138..42241622927667.020625-CDS-E-siliculosus-1a_F_contig1152:4138..4224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1152 4139..4224 +
1696318631.5233707-CDS-E-siliculosus-1a_F_contig1152:4138..42241696318631.5233707-CDS-E-siliculosus-1a_F_contig1152:4138..4224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1152 4139..4224 +
1622927667.0347085-CDS-E-siliculosus-1a_F_contig1152:4865..50031622927667.0347085-CDS-E-siliculosus-1a_F_contig1152:4865..5003Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1152 4866..5003 +
1696318631.530834-CDS-E-siliculosus-1a_F_contig1152:4865..50031696318631.530834-CDS-E-siliculosus-1a_F_contig1152:4865..5003Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1152 4866..5003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1152.995.1

>prot_E-siliculosus-1a_F_contig1152.995.1 ID=prot_E-siliculosus-1a_F_contig1152.995.1|Name=mRNA_E-siliculosus-1a_F_contig1152.995.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
MAGIDCCARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVDVEDPTAAASEC
YFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLGREDS
GYGSLTYLSQMPLMPQGYSRSDNYVDG*
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mRNA from alignment at E-siliculosus-1a_F_contig1152:977..6130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1152.995.1 ID=mRNA_E-siliculosus-1a_F_contig1152.995.1|Name=mRNA_E-siliculosus-1a_F_contig1152.995.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5154bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1152:977..6130+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACAGCTTTCCCGCGGAACCGTACGCGCCTTAAGCCGGTTGCCGTCAACA
AGGACGCATCATCCGGGCTGGGCTGTCGAATCAAAGCGGGAACAGCTAAC
CAAGGCGAGAGGCACCCCCTCACGCTCGAGCGAGCACACCTTGACGAGGA
AGGGACATCGGAAGGTTTTTGCGGAATCGAAGAACAACAGGAGCGTGGCA
ACGTAGGGGAGGGGCGAAACAAAAAGCGAGGGGGAGAGCCAAGTCTAGGA
TGGCCGGAATCGACTGCTGTGAGTACAGGGCTATAACTGAGGAAGAAGTG
CCGCCAGCTATGGATTGCCACACCGCCCGCATCTGCTGTGCTGCTATTGC
TCTGCGCAGAGGTAGATAGCACTTTGATTGTGCCGCCTCTGCTGCCGTTC
GGCGATCAACACCCTTCGCTACCGCACGAGAGGAGACTATTTTACTCTCA
CCGAGTACCTCCCTCTGGGCCGTGTGTCGACATGTCACCTGTGACAGCAG
GAGCAGCAAGCCGTGGTGGCGCGTTTTTTTTTCCATTGAGATATATAGGC
CTTTCTCCACAGCAATGTCACGGCTTTTGCTTCGAGTCTCGAACGAGGTC
TGTCGCACGACGCACGGCACACCCGAGAGGGTTGGCGCAAAATTTGGGTA
TTGGCGTGACGCCTGTGCACTAGCGGCGTGGGTGCTCATTCATGATTGGT
TTTGCAGACGGAGCCGCGAACGCATTTTTTAACAGCGGTGCCCGTCCCCC
CGTCGCAACCAATACTCTCCGCGTCTTGGAAAATTCCAGCGTAAGTTCGA
AAACCTCCCGTCAGGTGTGGGCACTCTGTACTTCTAGCTCGTGTGTTCCG
AACAGGCTTTTCCCATGCCCTCGCCACACAGCTGCAGTAAGGCAGAGGAA
ACGCTACCAACATTGTCAGACCTGCGCGTCCCAATACATGTGGTATGTAG
ACCTATGTATGCAGGCTTTTTCAAGCCTTTTGCGTCAAGACATGCATGAG
TTGTACACCATCACACAAAAGCGGGTTGCTATTGTAATAAGCAGCAGCGT
GTTGCGGCCCTGTTCGAGAGTTTTTCGATACCAGTACAATATTTATTCGG
ACGGTTGCGGCCACTAGACTACCGTGTGCACGTCGAAGGTCACCTGGCAC
ATTCGCCAAGATCACGAAACAATCGGACGGTTGCGGCCACTAGACTACCG
TGTGCACGTCGAAGGTCACCTGGCACATTCGCCAAGATCACGAAACAATC
GATGAAAACAAATGCACAGTGGGGCATACTCAAGCACTCCTTTAAACTCA
AGTGTCTCATGACAACACACGGATTGCTCTACCACAGCCCCCATGCTGGA
CCGTGAGATAAGCAGCATTCAGTCAGTGAGGTTTGCTGCCAGAGTTTACC
AGACGCCTCCTTACGTAGGAAAACTGTGCTGACCATATCAAGCTGGTCGC
CCAAGCTTGGAAATGAAACCCTCCCAATAATCCATGTCCTGGTATCTAGC
CAAGCACACGCTATGCGCGGCGTTGTGTCGGTTATCGCTTGGTTCTGTTG
TGGTTTTCAGCGGGTCTTCGGTGATGATCTGTTGTCGGAGGCTCAAACCC
TGTTGATGGCGGAGAAGAGGGGCTCGCGAAACAATGGATCAGCGGCCATC
CGCGTGCATCCGCGCATTCGCCCGCCTGTGGGACCAAAAACGTCGTCCGG
GACGCACTCAAGTATCTCCTACGCCAAGCAATTCTGGACCGCCCGAGCTC
ACGGCCAAAAATCATAGGCCTTTCATTTCTCGGCCTCTTTCGGACACAAG
CAGAACGTGTGCCGGTCCACGAAGTTTCAAGACACAACGTAACTACGCTC
GCCCACTTACATGTAGATTGTTTTTTAGGCCCGAGATGTCTTTTGAATGT
GTCCGTTACTTCCCGCGTCCACTTTGCGAGCGCTCTCGGCCAATTGTCAG
CAGTTGTGCTTCTTTCGACAACGCGATGTTTCTAGAAAACAGAGATACAG
TCATAGGACGGCCATTTTGAGATACATCCACAGCAGTGAAGGTGGGGTCT
TGAATGACGTCTTTGCAGCGAGTGGGAAGAAAACCACTCAACGTTTCCTT
CAACCTCTCTGTACTCGTACGCCGATAGAAGGAGCGACGAGACCCCCGCT
AACTCGCAGACAAGTCAGCGCATGGTAGTGCAAGAGAAAATAATAACAAG
TCAACATGAACCATGGTATCAACAACATACATAGCAGAAGTCAACATGAA
CTTTCACAACAGCAATCATCAGCAGCTACGGCAACACGAGTGCAACCCCC
TACAGGTGTTGCTCAACTTCTAACTAACCACCATCACCACCATCACCACC
ACCCCTTCTGTTTTCAGGCGCGAGGGTATGTATCGGGTTGTCCATCCCGG
GCATCATTTTCCTCATCATTATCGGTATCATGTTCGACAAGCAGGGCTTC
TATACCTCGGTAGACGTCGAAGATCCCACCGCGGCGGCGTCTGAGTGTTA
TTTTGCAGGTGAGATGGAAGGAGGGATGTTGCATCTTGTGCGTCGAAGAG
TTTTGCCACGGCCCCTCCCTTCTGACTTTGAACTGACAAGCGTAAGGAGG
GATGTTTTGTGTCGAAGAATATTGCCTCGGCGCTTCTCTTTTGACTGTAA
ACTGGCACACGGAAGGAGTTGATGTGTTGTGTCAAAGACTTGCAAGAATT
GCCATGACCCCTCTCTACTCTGATCGTGAACTGCCACAGAAAAATCCCTC
TACATTCTCCCCCCACGAGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCCATTGAGTACTAGATAGGAGGGTCATCCGCTTTCC
TTCTTGACGTGGGCACAGGGGTGATGACCCTGCCTTTCAAGTTCGGGGCT
TCTTTGCCTCTCACGAGCAACGATTTGGTGATATAATGCTTAGTCAGCAT
ACATGATGAGCTTTTGGCTTGGTTTGATGACGGCCTCCCCTCTTCCGACC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTACCCTATGTCTG
TCTGTTTGTCTCTCTCTCTCTCTTCTCTCCCTGTCTGTCTGTCTGTGCGT
GTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTTGTCTGTCTGTCTC
TCTGCGTATCAGCGTTGCTGTACGTTGTTGCGATCGGGGTCTCACTCGGG
GGCATCTGCTACGACAAGAACCGGCGAGGGATGTTGGTGACGACACAGGT
GCGGCAATAGACCCTTCATCTCTGCGCCTGTTTTTAATTTGTTGTTGGTT
GCTGCTATCCTCCCGGTGAAAGGGGAACAACCCGCGTCCACGCCCCACAA
TTGCACCCATAGAAGAAAAACGGACGCCCAAGAAGACGCACGCTGTATCT
AACGTCCGTATCGGTGTTGATGGTGTAGTTGTGGTACTTTGGTAGTTTTC
AGTCTTATCTCGCGCCTTTTGGAGGTTTTACGCTACGTACCCCTGGCGAT
GTCTTTACCCTCGCCCTTTCCAAGATTTTGTTTTTTTTGTGTTTCATGTG
TTCCGAATCGTGCTGGGTGTGCTCATTTTCCCAAATGTAGATCCCAGTGC
ATCACAACGTGCCAAGTATGCATAGCATAGCACGTTGAAAAGAAATTCTT
GTAGGGAAGAGATGACGGTATCACTCAAGGTGTCGGTGTGTACCAAGCAC
GAGGATCCTTGCTGTACCATCCGCCCATTTATTTTTGTTTTGTTTTTGGA
CGACACATCGTGGCTCGCCGCGTTCACCAACGGTTTCTCTCCCAGGGCTG
CTGTTCTACTCGTGACAGTGCCATCTTCTGTTCTGCGCCGACCCTCTTGT
TGCCCTTTGCCCCCGCGTGTGTTGTGCTCTCGTACACAGGAGGAGCTCGC
TCATGGAGACGAGAGCTCAGGGCTTCTGGGAAGGGAGGACTCCGGTTACG
GGTCGTTGACTTACCTTTCGCAGATGCCCTTGATGCCGCAGGGCTACTCC
CGAAGCGACAACTACGTAGATGGATGAGCGTACAGTAGTAGTATACGCAG
ACAGCAGGTTCGGTTTGTATTCGCAGAGGTTAGACATGCGATGCGTTCTT
TTTTTTTTTTGGTTCGCCGGGCGTTGAGATGCAGGTGCGGCTTCTTACTC
CCTGCTGCTCCTTGATTGCTTTGTCTTGTGAGGTCGACGCGTCAAGTGCA
GACCCCTGTACTTAAACCTCTTAGTAGTGTTGCGGCGCAGGAATTTTTGG
GTGAACTCAGCAGGAGGGGTCGCCTTGAGAGGTGGCCGGCCTCCCGCGTT
AGAGAGTCGTGAGTTAATACCCTTTCAATATGTTGCTGCCGGTACGATTG
TTGGACTTACTGGCAGGACAACCAAGGAGATAGCTAAAAGCCGTTTCTTT
GCCGCGACAAAGTATCCTACTTGAAAAAAGGGCGGGAACGGCCTTGATCC
CCGGCTTCGAGTTTCTTCGCGGCGTAAGCGTCCCGTGCTTTGTGGGAACC
AACCGGCAACGGCTGCTACTGATGTTGCTTGTCTAGCGTCCAAGCCGCGG
ACCGATCCTCGGAACGTGCGCGACGGGCCAGGAGAGTTAGGTGCCTTTGC
TGCTGGGCGTGGTGTCGGTCGTGGTGCGGCTCTCTTATCATTTGTGGTGC
TTTTTTTTTTTTTTTTTTGCGGGGATCAATCTGTGACTCGCTCGATCTTT
TTTCAGCATTTTTTCCTTCGTTGATGGGTAGGTCATGCCTTTGGGGATTT
CCGACCCCCATTACTAGATTGATGTATCGTCGGCCGAGCGCACCAGCGGC
GATTGGCGTATGTATCCAGAATGGACCCTTTCGGTGATCATCTGCGTTGA
TTCTGGCAGCCAGTCACTGGCGTGACAACCTATACTTGTTGCCTTGACGA
TTTTGTACTTGACTTTCCGGTCTCGTTACCAGTGGCTAGGGTGGTTAGCA
GCTGGGCCAGAAGGCAATGGGATAGGACGCAACTACAATGAATGAGCTCC
GTTTTGTTGTGTGGAGGCGCGCGTCGCGGCAACTGCTATGATTTCGTTTG
GCATGTTTGTGTTGCGTTTCATCTCTAAACCCCCTCGATGTCATCGCAAT
TGTTTTTCTATGTGTGGGTGGCTTGATCCTACCTATCGCGTCGTAGCGTG
TTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1152:977..6130+

>mRNA_E-siliculosus-1a_F_contig1152.995.1 ID=mRNA_E-siliculosus-1a_F_contig1152.995.1|Name=mRNA_E-siliculosus-1a_F_contig1152.995.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1152:977..6130+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCGGAATCGACTGCTATGGCCGGAATCGACTGCTGCGCGAGGGTAT
GTATCGGGTTGTCCATCCCGGGCATCATTTTCCTCATCATTATCGGTATC
ATGTTCGACAAGCAGGGCTTCTATACCTCGGTAGACGTCGAAGATCCCAC
CGCGGCGGCGTCTGAGTGTTATTTTGCAGGCGCGAGGGTATGTATCGGGT
TGTCCATCCCGGGCATCATTTTCCTCATCATTATCGGTATCATGTTCGAC
AAGCAGGGCTTCTATACCTCGGTAGACGTCGAAGATCCCACCGCGGCGGC
GTCTGAGTGTTATTTTGCAGCGTTGCTGTACGTTGTTGCGATCGGGGTCT
CACTCGGGGGCATCTGCTACGACAAGAACCGGCGAGGGATGTTGGTGACG
ACACAGCGTTGCTGTACGTTGTTGCGATCGGGGTCTCACTCGGGGGCATC
TGCTACGACAAGAACCGGCGAGGGATGTTGGTGACGACACAGGAGGAGCT
CGCTCATGGAGACGAGAGCTCAGGGCTTCTGGGAAGGGAGGACTCCGGTT
ACGGGTCGTTGACTTACCTTTCGCAGATGCCCTTGATGCCGCAGGGCTAC
TCCCGAAGCGACAACTACGTAGATGGATGAGAGGAGCTCGCTCATGGAGA
CGAGAGCTCAGGGCTTCTGGGAAGGGAGGACTCCGGTTACGGGTCGTTGA
CTTACCTTTCGCAGATGCCCTTGATGCCGCAGGGCTACTCCCGAAGCGAC
AACTACGTAGATGGATGA
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