mRNA_E-siliculosus-1a_F_contig11510.994.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig11510.994.1
Unique Name	mRNA_E-siliculosus-1a_F_contig11510.994.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig11510.994.1 vs. uniprot
Match: A0A6H5L509_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L509_9PHAE)

HSP 1 Score: 587 bits (1512), Expect = 1.660e-201
Identity = 329/489 (67.28%), Postives = 353/489 (72.19%), Query Frame = 1

Query:  268 MRTKLEDAEVRAEISRAVEPVLLHLSRSAIDLKTALKMACGQVAKILLDEEELPPQVSPFFLDASFDQPERGGSHALVGFMCPAHEDNVCLSGESGNRTITLHRLIESAVASQGHDPALCVNTNAVRCLKSGDGSYSNPCAVDENVNSVSQLLRAIYFAGLHEYGVKVSRIVQCCGSEELDRGPFHLGPWSGLLPAAGLLLSLSTTQFLTAPHLTATKCSQSYHEGLAARVAARIVQARLGEKGPRLSSTGSAVFGSVSAGTNEAAFRQCPEDIGPPAPSSGSAASEQAVTNLRSMLEESLCGSLGSREVAASAVSRISAPPSKDEAKQSATAAKNANDAAFKKLVSDRDGVKNSGVAGGLTSGVAIVDTWTPDACDSGRLIERGPGTRDQRVAHTWHMNSLLLGRAHGGASAPRREATCPSRTDLLDDKQARRRLGEPPLLLNRQGVTDGGGKEQTGYRMPSKDAEAVGRAVCKEALIAAVSKGGVRV 1734
            MRTKLEDAE+RAEISRAV+PVLL   RSA +LK ALKMACG+VA+ILLD E+LPPQVSPFFL+  FDQPERG S+ALVGFMCPAHEDNV  SGESGNRTI LHRLIESAVASQGHD A+CVNTNAVRCLKSGDGS++NP A DENV+SVSQLLRA+YFAGLH YGVK++RIVQC                                                              +AR GEKGPRLSS G  VF SV AGT EAAFR CPEDIGPP PSSGSAASEQAVTNLRSMLE SLCGSL                           AAKNANDA F+ +V DRDGVK+SGVAGGL SGVAIVDTW PD CDSGRLIERGPG RDQRVAH+ HMNS LL  AHGGAS+P  +AT PSR DLL DKQARRRLG+PPLLL+RQGVTDGGGKEQTGYRMPSK  EAVGRAVCK  L AAVSKGGVRV
Sbjct:    1 MRTKLEDAEIRAEISRAVKPVLLEPRRSAKELKGALKMACGKVARILLDSEKLPPQVSPFFLNDCFDQPERGASYALVGFMCPAHEDNVGFSGESGNRTIKLHRLIESAVASQGHDRAVCVNTNAVRCLKSGDGSHANPFARDENVDSVSQLLRAMYFAGLHAYGVKITRIVQC--------------------------------------------------------------RARSGEKGPRLSSAGRVVFDSVRAGTTEAAFRVCPEDIGPPTPSSGSAASEQAVTNLRSMLEASLCGSLA--------------------------AAKNANDARFRHVVPDRDGVKHSGVAGGLASGVAIVDTWAPDVCDSGRLIERGPGPRDQRVAHSLHMNSFLLVWAHGGASSPLGKATRPSRDDLLGDKQARRRLGKPPLLLDRQGVTDGGGKEQTGYRMPSKRVEAVGRAVCKATLKAAVSKGGVRV 401

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig11510.994.1 vs. uniprot
Match: A0A6H5JPV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV0_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 2.210e-79
Identity = 155/310 (50.00%), Postives = 191/310 (61.61%), Query Frame = 1

Query:  247 TVATCTGMRTKLEDAEVRAEISRAVEPVLLHLSRSAIDLKTALKMACGQVAKILLDEEELPPQVSPFFLDASFDQPERGGSHALVGFMCPAHEDNVCLSGESGNRTITLHRLIESAVASQGHDPALCVNTNAVRCLKSGDGSYSNPCAVDENVNSVSQLLRAIYFAGLHEYGVKVSRIVQCCGSEELDRGPFHLGPWSGLLPAAGLLLSLSTTQFLTAPHLTATKCSQSYHEGLAARVAARIVQARLGEKGPRLSSTGSAVFGSVSAGTNEAAFRQCPEDIGPPAPSSGSAASEQAVTNLRSMLEESLCG 1176
            T   CT +  +LED    A++ R VE VL  LS S I+L+ ALK   G+VA++L+  EELP ++SPFFLD  F+ PE G S AL+G+ CPAHEDNV L GE+ NR ITL                         C     G  +      E    +S+ +RA+YFA L    VKV+RIVQ CGSE+L +GPFHL PW    P AG LL+L TT F ++PH TATK S+SYH GLAA+ AA+I +ARLGE GPRLS  G A F SV+AGT  A FR CPE I PP  +SGS AS+QAV+NLRS L+E   G
Sbjct:  139 TATLCTELNNRLEDVSTIADVLREVEEVLGELSGSKIELEPALKEMVGKVARVLMGVEELPKEMSPFFLDPLFNAPEWGESCALMGYTCPAHEDNVSLGGETENRIITLG------------------------C----GGGGARQVVGRERQLLLSEFVRALYFAALDANDVKVTRIVQSCGSEDLAKGPFHLAPWLERFPVAGHLLNLPTTPFFSSPHRTATKTSKSYHPGLAAKAAAQIFRARLGEAGPRLSDDGRAFFDSVNAGTAAAGFRDCPEYIAPPTRTSGSTASKQAVSNLRSSLQELFSG 420

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig11510.994.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig11510.994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L509_9PHAE	1.660e-201	67.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPV0_9PHAE	2.210e-79	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig11510	contig	E-siliculosus-1a_F_contig11510:67..1804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	0
Stop	0
Cds size	1737
Model size	1739
Exons	1
Hectar predicted targeting category	other localisation

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927666.8437119-CDS-E-siliculosus-1a_F_contig11510:66..1803	1622927666.8437119-CDS-E-siliculosus-1a_F_contig11510:66..1803	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig11510 67..1803 +
1696318631.492913-CDS-E-siliculosus-1a_F_contig11510:66..1803	1696318631.492913-CDS-E-siliculosus-1a_F_contig11510:66..1803	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig11510 67..1803 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig11510.994.1	prot_E-siliculosus-1a_F_contig11510.994.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig11510 67..1803 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig11510:67..1804+
coding sequence from alignment at E-siliculosus-1a_F_contig11510:67..1804+

protein sequence of mRNA_E-siliculosus-1a_F_contig11510.994.1

>prot_E-siliculosus-1a_F_contig11510.994.1 ID=prot_E-siliculosus-1a_F_contig11510.994.1|Name=mRNA_E-siliculosus-1a_F_contig11510.994.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=579bp
VRGGNSGKQPKTSGGGNGSAGNGSSGGGTGRTSNSSSNNSGNSSSGGGGG
SSSSSSDAGAVVGPNHPSDAHKALYRHHAGNVTVATCTGMRTKLEDAEVR
AEISRAVEPVLLHLSRSAIDLKTALKMACGQVAKILLDEEELPPQVSPFF
LDASFDQPERGGSHALVGFMCPAHEDNVCLSGESGNRTITLHRLIESAVA
SQGHDPALCVNTNAVRCLKSGDGSYSNPCAVDENVNSVSQLLRAIYFAGL
HEYGVKVSRIVQCCGSEELDRGPFHLGPWSGLLPAAGLLLSLSTTQFLTA
PHLTATKCSQSYHEGLAARVAARIVQARLGEKGPRLSSTGSAVFGSVSAG
TNEAAFRQCPEDIGPPAPSSGSAASEQAVTNLRSMLEESLCGSLGSREVA
ASAVSRISAPPSKDEAKQSATAAKNANDAAFKKLVSDRDGVKNSGVAGGL
TSGVAIVDTWTPDACDSGRLIERGPGTRDQRVAHTWHMNSLLLGRAHGGA
SAPRREATCPSRTDLLDDKQARRRLGEPPLLLNRQGVTDGGGKEQTGYRM
PSKDAEAVGRAVCKEALIAAVSKGGVRVV

mRNA from alignment at E-siliculosus-1a_F_contig11510:67..1804+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig11510.994.1 ID=mRNA_E-siliculosus-1a_F_contig11510.994.1|Name=mRNA_E-siliculosus-1a_F_contig11510.994.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1738bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11510:67..1804+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCGTGGCGGCAACAGCGGCAAGCAGCCGAAGACCAGCGGCGGCGGCAA
CGGTAGCGCAGGCAACGGCAGCAGCGGCGGCGGCACGGGCAGAACCAGCA
ACAGCAGCAGCAACAACAGCGGCAACAGCAGTAGCGGGGGCGGCGGCGGC
AGCAGCAGCAGTTCCAGCGATGCCGGGGCCGTGGTTGGTCCGAATCACCC
GAGCGACGCCCACAAGGCGCTCTACCGGCATCATGCCGGCAACGTTACCG
TGGCCACCTGCACCGGAATGAGGACGAAGCTGGAAGACGCCGAAGTCCGG
GCCGAGATTTCACGGGCAGTGGAGCCGGTGCTACTTCACCTGAGTCGGTC
CGCTATAGACTTGAAGACCGCGCTCAAGATGGCGTGCGGACAGGTCGCCA
AGATACTCTTGGATGAGGAGGAGCTGCCGCCGCAGGTGTCCCCTTTCTTC
CTCGACGCGAGCTTCGACCAGCCCGAGCGGGGTGGATCGCACGCCCTCGT
GGGCTTCATGTGCCCCGCACATGAAGACAACGTCTGCTTATCCGGAGAGA
GCGGAAACCGGACGATCACGCTGCACCGCCTGATCGAGTCTGCGGTGGCG
AGCCAGGGCCACGACCCGGCGCTCTGTGTGAACACCAACGCGGTACGCTG
CCTCAAGAGTGGGGATGGCAGCTACTCGAACCCTTGCGCTGTCGACGAGA
ACGTCAACAGCGTCTCGCAACTTCTTCGTGCGATCTACTTCGCGGGTCTC
CACGAGTACGGCGTGAAGGTCTCCCGCATCGTCCAGTGCTGCGGGAGCGA
GGAGCTGGATAGAGGGCCGTTCCACCTGGGACCCTGGTCTGGGCTTCTTC
CGGCGGCGGGGCTCCTGCTCTCGTTGTCCACCACCCAGTTCCTCACCGCC
CCCCACCTGACGGCGACCAAGTGCAGCCAGAGCTACCACGAGGGACTCGC
GGCGAGGGTTGCCGCGCGGATCGTTCAGGCGCGGTTGGGCGAGAAGGGGC
CGCGGCTTTCTTCCACCGGGAGTGCAGTTTTCGGCTCCGTGAGTGCCGGA
ACAAATGAGGCAGCCTTTCGCCAGTGCCCAGAGGACATCGGCCCCCCCGC
CCCCAGCTCCGGGTCTGCTGCGTCGGAGCAGGCCGTCACAAACCTGAGGT
CGATGCTTGAGGAGAGCCTATGCGGCAGTCTCGGTTCGCGAGAGGTGGCG
GCATCGGCTGTGTCACGTATCTCCGCCCCACCCAGCAAGGACGAGGCGAA
GCAGTCGGCAACCGCCGCGAAGAATGCCAACGACGCTGCATTCAAGAAAC
TGGTCTCCGACCGCGACGGCGTCAAGAATAGCGGGGTCGCAGGCGGCTTG
ACCTCGGGAGTGGCTATAGTGGATACGTGGACGCCGGACGCTTGCGACAG
CGGCCGTCTGATCGAGCGGGGGCCGGGGACGCGTGACCAGAGGGTCGCAC
ATACCTGGCACATGAATTCCCTCCTGCTCGGACGGGCTCATGGTGGAGCG
TCTGCCCCGCGGAGAGAAGCGACTTGTCCCAGCCGGACCGACCTCTTGGA
CGACAAGCAAGCCCGCCGGAGGTTGGGCGAGCCCCCGCTGCTTCTCAATA
GGCAGGGGGTAACGGACGGTGGTGGAAAGGAGCAGACGGGATACCGTATG
CCCAGCAAGGACGCGGAGGCCGTGGGCAGGGCCGTGTGCAAAGAAGCGTT
GATCGCGGCGGTCTCAAAGGGTGGGGTGCGGGTGGTGG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11510:67..1804+

>mRNA_E-siliculosus-1a_F_contig11510.994.1 ID=mRNA_E-siliculosus-1a_F_contig11510.994.1|Name=mRNA_E-siliculosus-1a_F_contig11510.994.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3474bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11510:67..1804+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCGTGGCGGCAACAGCGGCAAGCAGCCGAAGACCAGCGGCGGCGGCAA
CGGTAGCGCAGGCAACGGCAGCAGCGGCGGCGGCACGGGCAGAACCAGCA
ACAGCAGCAGCAACAACAGCGGCAACAGCAGTAGCGGGGGCGGCGGCGGC
AGCAGCAGCAGTTCCAGCGATGCCGGGGCCGTGGTTGGTCCGAATCACCC
GAGCGACGCCCACAAGGCGCTCTACCGGCATCATGCCGGCAACGTTACCG
TGGCCACCTGCACCGGAATGAGGACGAAGCTGGAAGACGCCGAAGTCCGG
GCCGAGATTTCACGGGCAGTGGAGCCGGTGCTACTTCACCTGAGTCGGTC
CGCTATAGACTTGAAGACCGCGCTCAAGATGGCGTGCGGACAGGTCGCCA
AGATACTCTTGGATGAGGAGGAGCTGCCGCCGCAGGTGTCCCCTTTCTTC
CTCGACGCGAGCTTCGACCAGCCCGAGCGGGGTGGATCGCACGCCCTCGT
GGGCTTCATGTGCCCCGCACATGAAGACAACGTCTGCTTATCCGGAGAGA
GCGGAAACCGGACGATCACGCTGCACCGCCTGATCGAGTCTGCGGTGGCG
AGCCAGGGCCACGACCCGGCGCTCTGTGTGAACACCAACGCGGTACGCTG
CCTCAAGAGTGGGGATGGCAGCTACTCGAACCCTTGCGCTGTCGACGAGA
ACGTCAACAGCGTCTCGCAACTTCTTCGTGCGATCTACTTCGCGGGTCTC
CACGAGTACGGCGTGAAGGTCTCCCGCATCGTCCAGTGCTGCGGGAGCGA
GGAGCTGGATAGAGGGCCGTTCCACCTGGGACCCTGGTCTGGGCTTCTTC
CGGCGGCGGGGCTCCTGCTCTCGTTGTCCACCACCCAGTTCCTCACCGCC
CCCCACCTGACGGCGACCAAGTGCAGCCAGAGCTACCACGAGGGACTCGC
GGCGAGGGTTGCCGCGCGGATCGTTCAGGCGCGGTTGGGCGAGAAGGGGC
CGCGGCTTTCTTCCACCGGGAGTGCAGTTTTCGGCTCCGTGAGTGCCGGA
ACAAATGAGGCAGCCTTTCGCCAGTGCCCAGAGGACATCGGCCCCCCCGC
CCCCAGCTCCGGGTCTGCTGCGTCGGAGCAGGCCGTCACAAACCTGAGGT
CGATGCTTGAGGAGAGCCTATGCGGCAGTCTCGGTTCGCGAGAGGTGGCG
GCATCGGCTGTGTCACGTATCTCCGCCCCACCCAGCAAGGACGAGGCGAA
GCAGTCGGCAACCGCCGCGAAGAATGCCAACGACGCTGCATTCAAGAAAC
TGGTCTCCGACCGCGACGGCGTCAAGAATAGCGGGGTCGCAGGCGGCTTG
ACCTCGGGAGTGGCTATAGTGGATACGTGGACGCCGGACGCTTGCGACAG
CGGCCGTCTGATCGAGCGGGGGCCGGGGACGCGTGACCAGAGGGTCGCAC
ATACCTGGCACATGAATTCCCTCCTGCTCGGACGGGCTCATGGTGGAGCG
TCTGCCCCGCGGAGAGAAGCGACTTGTCCCAGCCGGACCGACCTCTTGGA
CGACAAGCAAGCCCGCCGGAGGTTGGGCGAGCCCCCGCTGCTTCTCAATA
GGCAGGGGGTAACGGACGGTGGTGGAAAGGAGCAGACGGGATACCGTATG
CCCAGCAAGGACGCGGAGGCCGTGGGCAGGGCCGTGTGCAAAGAAGCGTT
GATCGCGGCGGTCTCAAAGGGTGGGGTGCGGGTGGTGGTCCGTGGCGGCA
ACAGCGGCAAGCAGCCGAAGACCAGCGGCGGCGGCAACGGTAGCGCAGGC
AACGGCAGCAGCGGCGGCGGCACGGGCAGAACCAGCAACAGCAGCAGCAA
CAACAGCGGCAACAGCAGTAGCGGGGGCGGCGGCGGCAGCAGCAGCAGTT
CCAGCGATGCCGGGGCCGTGGTTGGTCCGAATCACCCGAGCGACGCCCAC
AAGGCGCTCTACCGGCATCATGCCGGCAACGTTACCGTGGCCACCTGCAC
CGGAATGAGGACGAAGCTGGAAGACGCCGAAGTCCGGGCCGAGATTTCAC
GGGCAGTGGAGCCGGTGCTACTTCACCTGAGTCGGTCCGCTATAGACTTG
AAGACCGCGCTCAAGATGGCGTGCGGACAGGTCGCCAAGATACTCTTGGA
TGAGGAGGAGCTGCCGCCGCAGGTGTCCCCTTTCTTCCTCGACGCGAGCT
TCGACCAGCCCGAGCGGGGTGGATCGCACGCCCTCGTGGGCTTCATGTGC
CCCGCACATGAAGACAACGTCTGCTTATCCGGAGAGAGCGGAAACCGGAC
GATCACGCTGCACCGCCTGATCGAGTCTGCGGTGGCGAGCCAGGGCCACG
ACCCGGCGCTCTGTGTGAACACCAACGCGGTACGCTGCCTCAAGAGTGGG
GATGGCAGCTACTCGAACCCTTGCGCTGTCGACGAGAACGTCAACAGCGT
CTCGCAACTTCTTCGTGCGATCTACTTCGCGGGTCTCCACGAGTACGGCG
TGAAGGTCTCCCGCATCGTCCAGTGCTGCGGGAGCGAGGAGCTGGATAGA
GGGCCGTTCCACCTGGGACCCTGGTCTGGGCTTCTTCCGGCGGCGGGGCT
CCTGCTCTCGTTGTCCACCACCCAGTTCCTCACCGCCCCCCACCTGACGG
CGACCAAGTGCAGCCAGAGCTACCACGAGGGACTCGCGGCGAGGGTTGCC
GCGCGGATCGTTCAGGCGCGGTTGGGCGAGAAGGGGCCGCGGCTTTCTTC
CACCGGGAGTGCAGTTTTCGGCTCCGTGAGTGCCGGAACAAATGAGGCAG
CCTTTCGCCAGTGCCCAGAGGACATCGGCCCCCCCGCCCCCAGCTCCGGG
TCTGCTGCGTCGGAGCAGGCCGTCACAAACCTGAGGTCGATGCTTGAGGA
GAGCCTATGCGGCAGTCTCGGTTCGCGAGAGGTGGCGGCATCGGCTGTGT
CACGTATCTCCGCCCCACCCAGCAAGGACGAGGCGAAGCAGTCGGCAACC
GCCGCGAAGAATGCCAACGACGCTGCATTCAAGAAACTGGTCTCCGACCG
CGACGGCGTCAAGAATAGCGGGGTCGCAGGCGGCTTGACCTCGGGAGTGG
CTATAGTGGATACGTGGACGCCGGACGCTTGCGACAGCGGCCGTCTGATC
GAGCGGGGGCCGGGGACGCGTGACCAGAGGGTCGCACATACCTGGCACAT
GAATTCCCTCCTGCTCGGACGGGCTCATGGTGGAGCGTCTGCCCCGCGGA
GAGAAGCGACTTGTCCCAGCCGGACCGACCTCTTGGACGACAAGCAAGCC
CGCCGGAGGTTGGGCGAGCCCCCGCTGCTTCTCAATAGGCAGGGGGTAAC
GGACGGTGGTGGAAAGGAGCAGACGGGATACCGTATGCCCAGCAAGGACG
CGGAGGCCGTGGGCAGGGCCGTGTGCAAAGAAGCGTTGATCGCGGCGGTC
TCAAAGGGTGGGGTGCGGGTGGTG