mRNA_E-siliculosus-1a_F_contig1150.987.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1150.987.1
Unique NamemRNA_E-siliculosus-1a_F_contig1150.987.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: A0A6H5JNK1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK1_9PHAE)

HSP 1 Score: 525 bits (1352), Expect = 2.270e-179
Identity = 337/394 (85.53%), Postives = 344/394 (87.31%), Query Frame = 1 
Query:    1 MHSKAFYAIEELKGIRDKAKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDKTRNAAPTSTPGPRWGSLSPSNGSPNGHTAHPSSPLRGAGAAGGVDDRFPAIGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGXXXXXXXXXXXLSASSRQEHAKVHFLLTSLRSSKAAATQGDDGGGKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKAVRRGVTFAEDVVXXXXXXXXXXXXXXXXXXXXXXXXXXXSTASTDRIVGWSP 1182
            MHSKAFYAIE+LKGIRDKAKSSNRRR GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNR + ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDKTRNAAPT+TPG RWGSLSPS+GSP+GHTAHPSSPLRGA AAGGVDDRFPA GGVGGSTPTPPRKKPREKSPWEGRGRKRPRSG           LSASSRQEHAKVHFLLTSLR SKAAA QG DGG K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  KAVRRGVTFAEDVV                      XXX  S AS DR++GWSP
Sbjct:  326 MHSKAFYAIEQLKGIRDKAKSSNRRR-GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAK-ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDKTRNAAPTATPGSRWGSLSPSHGSPDGHTAHPSSPLRGARAAGGVDDRFPANGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGGSGKRVTGGGGLSASSRQEHAKVHFLLTSLRPSKAAAAQGGDGGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KAVRRGVTFAEDVVVVQDKAVAAVEDPRWRGEAAAGXXXA-SAASPDRVIGWSP 714
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: D7FP68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP68_ECTSI)

HSP 1 Score: 508 bits (1309), Expect = 1.790e-177
Identity = 347/399 (86.97%), Postives = 351/399 (87.97%), Query Frame = 1 
Query:    1 MHSKAFYAIEELKGIRDKAKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD-KTRNAAPTSTPGPRWGSLSPSNGSPNGHTAHPSSPLRGAGAAGGVDDRFPAIGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGXXXXXXXXXXXLSASSRQEHAKVHFLLTSLRSSKAAATQGDDGGGKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KKAVRRGVTFAEDVVXXXXXXXXXXXXXXXXXXXXXXXXXXX---STASTDRIVGWSP 1182
            MHSKAFYAIE+LKGIRDKAKSSNRRR GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNR + ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD KTRNAAPT+TPG RWGSLSP+NGSPNGHTAH SSPLRGAGAAGGVD RFPA GGVGGSTPTPPRKKPREKSPWEGRGRKRPRSG           LSASSRQEHAKVHFLLTSLRSSKAAA          XXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXX KKAVRRGVTFAEDVV   XXXXXXXXXXXXXXXXXXXXXXXX   S AS DRIVGWSP
Sbjct:    1 MHSKAFYAIEQLKGIRDKAKSSNRRR-GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAK-ELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDDKTRNAAPTATPGSRWGSLSPTNGSPNGHTAHSSSPLRGAGAAGGVDGRFPANGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGGSGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXGEGDAGSLSSXXXXXXXXXXXXXXXXXXKKAVRRGVTFAEDVVVVQXXXXXXXXXXXXXXXXXXXXXXXXXXVSAASPDRIVGWSP 397
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BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: A0A835Z414_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z414_9STRA)

HSP 1 Score: 153 bits (387), Expect = 5.780e-37
Identity = 86/177 (48.59%), Postives = 117/177 (66.10%), Query Frame = 1 
Query:    1 MHSKAFYAIEELKGIR--------DKAKSSNRRRR----GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD 495
            MHSKA   I +L   R        + A S   +RR     D RP+KAI+FSQF  VL++VGDK  R  G  PE GW  RG + VAEF+G  RR  EL +F+T  +CFVLLL   G+ GLDLSFVTH++L+++IW+++LE QV+ARA+R+GA G V V+QL M+ T+E+ L + ++ D
Sbjct: 1044 MHSKAREVIRQLDAARATAQQVQHELAASVREQRRLSAARDTRPVKAIIFSQFRKVLDMVGDKMYRYYGRCPEAGWLERGSEQVAEFFGA-RRNDELTKFKTSADCFVLLLNMDGSTGLDLSFVTHIYLLEEIWNKALERQVIARAHRLGATGPVKVIQLAMRGTIEETLLNGMDGD 1219
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BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: B8CDY7_THAPS (Bromo domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY7_THAPS)

HSP 1 Score: 140 bits (354), Expect = 1.130e-32
Identity = 77/167 (46.11%), Postives = 104/167 (62.28%), Query Frame = 1 
Query:    7 SKAFYAIEELKGIRDKAK-----------SSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQEL 474
            SKA Y I++L  +R+++            S +      +RPLKAIVFSQF P+    GD+ +RE GG            CVA+F     R  EL++FR DP+CF++LL K+G+HGLDLSF TH+F +D I+D+SLE QVVARA RMGA G V V QL  KD++E+ +
Sbjct: 1282 SKAKYTIDKLLQLRNESSRNVSELAVRMFSKSSTHSSSHRPLKAIVFSQFRPIYEYFGDRLIREFGGA-----------CVADFSFTKTRNEELKKFRLDPQCFIMLLSKQGSHGLDLSFCTHIFFLDTIYDKSLEQQVVARAYRMGATGPVYVEQLTAKDSIEEVM 1437
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: A0A7S3L006_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L006_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.220e-32
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:  106 IVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSD 495
            I+FSQF   LN+VGD+ L   G             CV+E+WG+ R + EL +F +DPECF +LLGK G+ GLDLSFVTH+F +++IWD+SL  Q VARA RMGA+G+V V  +I +DT+E+ +++    D
Sbjct:    1 IIFSQFRKALNLVGDRLLGRFGSA-----------CVSEYWGRYRTQ-ELHKFTSDPECFCMLLGKDGSEGLDLSFVTHIFFLEEIWDKSLAEQTVARAWRMGARGAVEVETIIAQDTVEETMKALEAGD 118
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: A0A7S0C464_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C464_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.050e-30
Identity = 64/126 (50.79%), Postives = 89/126 (70.63%), Query Frame = 1 
Query:   91 RPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQ 468
            RP+K I+FSQF  +LN+VGD+ +R  G             C+AE+WG +R+  EL +F     CF +LLGK G+HGLDLSFVTH+F +++IWD+SL+ QV+ARA RMGA GSV V QL+ K+++E+
Sbjct:  428 RPVKVILFSQFRQILNVVGDRLIRRFGN-----------DCIAEYWGGHRKS-ELAKFILSENCFCMLLGKDGSHGLDLSFVTHIFFVEEIWDKSLKDQVIARAYRMGATGSVHVEQLVAKNSVEE 541
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BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: A0A7S2UJZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJZ7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.030e-29
Identity = 64/141 (45.39%), Postives = 98/141 (69.50%), Query Frame = 1 
Query:   91 RPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDKTRNAA 513
            R LK I+FSQF P+LN++GD+ +R+ G           +  ++E+WG  + + EL++F   P+CF++LL + G+HGLDLSFVTHMF M++IWD+SLE QVVAR+ RMG KG V + QL+ ++++E EL + +N  +   +A
Sbjct:  428 RALKVIIFSQFRPILNLIGDRLIRKFG-----------DDNISEYWGYAKAK-ELDKFIYSPDCFIMLLSRDGSHGLDLSFVTHMFFMEEIWDKSLEQQVVARSYRMGTKGHVEIEQLVSRNSVE-ELMANMNDREGEQSA 555
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: A0A448ZGK3_9STRA (RING-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.150e-29
Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:   82 GDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQEL 474
            G  RP K IVFSQF  VLNI GD+ LR  G             C+AE+WGK R++ EL++F  D +C  +LLGK G+ GLDLSFVTH+  ++Q+WD+SLE QVVARA RMGA+GSV V  L+ ++++E+ +
Sbjct: 1368 GGRRPPKVIVFSQFRKVLNITGDRLLRRFGSG-----------CIAEYWGKYRKK-ELQKFVRDEKCLCMLLGKDGSEGLDLSFVTHIVFLEQVWDKSLENQVVARAWRMGARGSVEVETLVAENSIEETM 1486
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: A0A1Z5KLC0_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLC0_FISSO)

HSP 1 Score: 129 bits (324), Expect = 9.190e-29
Identity = 74/164 (45.12%), Postives = 100/164 (60.98%), Query Frame = 1 
Query:    7 SKAFYAIEELKGIRDKAKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDK 498
            SK+ Y I ++  +   +K+         RPLK IVFSQF   LN+VGD+  R  G             CVAE+WG+ R+E EL +F    EC  LLL K G+ GLDLSFVTH+FL+++IWD++LE QVVARA RMGA G V V  L+ + ++E E+   V +D+
Sbjct: 1042 SKSHYLINKIAALHSNSKNQ--------RPLKVIVFSQFRKALNVVGDRLYRRFGSA-----------CVAEYWGRYRKE-ELSKFIHHSECVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQVVARAWRMGAHGRVEVETLVAQHSVE-EIMMDVKADE 1184
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Match: A0A1Z5KNI5_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNI5_FISSO)

HSP 1 Score: 128 bits (321), Expect = 2.260e-28
Identity = 71/164 (43.29%), Postives = 99/164 (60.37%), Query Frame = 1 
Query:    7 SKAFYAIEELKGIRDKAKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIMKDTMEQELRSYVNSDK 498
            SK+ Y I ++  +   +K+         RPLK IVFSQF   LN+VGD+  R  G             CVAE+WG+ R+E EL +F    +C  LLL K G+ GLDLSFVTH+FL+++IWD++LE QVVARA RMGA+G V V  L+ + ++E+ +    +  K
Sbjct: 1039 SKSHYLINKIAALHSNSKNE--------RPLKVIVFSQFRKALNVVGDRLYRRFGSA-----------CVAEYWGRYRKE-ELSKFIHRNDCVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQVVARAWRMGARGRVEVETLVAQHSVEEIMMDADDEQK 1182
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1150.987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNK1_9PHAE2.270e-17985.53SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FP68_ECTSI1.790e-17786.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z414_9STRA5.780e-3748.59SNF2 family N-terminal domain-containing protein n... [more]
B8CDY7_THAPS1.130e-3246.11Bromo domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S3L006_9STRA6.220e-3248.46Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0C464_9STRA3.050e-3050.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2UJZ7_9STRA1.030e-2945.39Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448ZGK3_9STRA1.150e-2951.15RING-type domain-containing protein n=1 Tax=Pseudo... [more]
A0A1Z5KLC0_FISSO9.190e-2945.12Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fist... [more]
A0A1Z5KNI5_FISSO2.260e-2843.29Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fist... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1150contigE-siliculosus-1a_F_contig1150:24766..28284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1185
Model size1185
Exons5
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EggNOG OGsCOG0141@1,KOG1002@2759
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
Seed eggNOG ortholog2880.D7FP68
Seed ortholog evalue2.1e-144
Seed ortholog score518.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1150.987.1prot_E-siliculosus-1a_F_contig1150.987.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1150 24766..28284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927665.032721-CDS-E-siliculosus-1a_F_contig1150:24765..255631622927665.032721-CDS-E-siliculosus-1a_F_contig1150:24765..25563Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 24766..25563 -
1696318630.5060823-CDS-E-siliculosus-1a_F_contig1150:24765..255631696318630.5060823-CDS-E-siliculosus-1a_F_contig1150:24765..25563Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 24766..25563 -
1622927665.0537477-CDS-E-siliculosus-1a_F_contig1150:25885..260231622927665.0537477-CDS-E-siliculosus-1a_F_contig1150:25885..26023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 25886..26023 -
1696318630.5180702-CDS-E-siliculosus-1a_F_contig1150:25885..260231696318630.5180702-CDS-E-siliculosus-1a_F_contig1150:25885..26023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 25886..26023 -
1622927665.0783367-CDS-E-siliculosus-1a_F_contig1150:27280..273911622927665.0783367-CDS-E-siliculosus-1a_F_contig1150:27280..27391Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 27281..27391 -
1696318630.5274262-CDS-E-siliculosus-1a_F_contig1150:27280..273911696318630.5274262-CDS-E-siliculosus-1a_F_contig1150:27280..27391Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 27281..27391 -
1622927665.0960202-CDS-E-siliculosus-1a_F_contig1150:27910..279711622927665.0960202-CDS-E-siliculosus-1a_F_contig1150:27910..27971Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 27911..27971 -
1696318630.5364342-CDS-E-siliculosus-1a_F_contig1150:27910..279711696318630.5364342-CDS-E-siliculosus-1a_F_contig1150:27910..27971Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 27911..27971 -
1622927665.1142416-CDS-E-siliculosus-1a_F_contig1150:28207..282841622927665.1142416-CDS-E-siliculosus-1a_F_contig1150:28207..28284Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 28208..28284 -
1696318630.54561-CDS-E-siliculosus-1a_F_contig1150:28207..282841696318630.54561-CDS-E-siliculosus-1a_F_contig1150:28207..28284Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1150 28208..28284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1150.987.1

>prot_E-siliculosus-1a_F_contig1150.987.1 ID=prot_E-siliculosus-1a_F_contig1150.987.1|Name=mRNA_E-siliculosus-1a_F_contig1150.987.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=395bp
MHSKAFYAIEELKGIRDKAKSSNRRRRGDYRPLKAIVFSQFLPVLNIVGD
KFLRELGGFPEEGWQRRGEKCVAEFWGKNRREGELERFRTDPECFVLLLG
KRGAHGLDLSFVTHMFLMDQIWDRSLETQVVARANRMGAKGSVSVVQLIM
KDTMEQELRSYVNSDKTRNAAPTSTPGPRWGSLSPSNGSPNGHTAHPSSP
LRGAGAAGGVDDRFPAIGGVGGSTPTPPRKKPREKSPWEGRGRKRPRSGG
GGKRVAGGGGLSASSRQEHAKVHFLLTSLRSSKAAATQGDDGGGKDKEKQ
RGAEEEEEEEDGEGNAGALSSARQGDGKGKGKGKGKGKGKKAVRRGVTFA
EDVVVVQDNAAAAAVEDPLWGGEAAAGGGGASTASTDRIVGWSP*
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mRNA from alignment at E-siliculosus-1a_F_contig1150:24766..28284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1150.987.1 ID=mRNA_E-siliculosus-1a_F_contig1150.987.1|Name=mRNA_E-siliculosus-1a_F_contig1150.987.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3519bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1150:24766..28284- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACAGCAAGGCGTTCTACGCAATTGAGGAGCTGAAGGGTATTCGGGA
CAAGGCCAAGTCATCGAACAGGCGACGGTAAGCAGGAGAGAAATACTGAG
AAGCACGCATCTTATCCTTAGGTTGAGGATTTTTCTATCGCCGCGTGTGC
CGCCTGTAGGCGGGCCTGCTTTACTCGTACTACGCTTGCTTTAATGGGAA
AAAATACGCCTGGTTGCTGTTTCAACGGATAGGTATTGGCCACAATAGAC
ATATGTATGACCGCCAATTCATGACAAGTGTTTTTTCGTCGTTTCCCTGT
CGTCGTCCGCGAGCAGGGGAGACTATCGTCCGTTGAAGGCGATCGTGTTC
TCGCAGTTTCTTCCAGTCCTCAACGTGAGTCCAGCCGATTTATTCGGCGT
TGACACGCTGCACTATATAGAGGGATAGCAGCAGTGTCGCGAGAGATCGA
CCGAACGATACGACAAGGTTTTAAAGAAGTTCGTTGGTGAAATTGATCCA
AAAAATAAGGTGCTGTGCATGTACGACCATCGCAGACAACAACAGGGTTT
AAAAGAAGTTAATTGTTGATTAAAAAAACAAGGTGCTGTGCGTGTACGAC
CATCGCACACAACAAAAGGTTTTGAAGAAGTTCGTTGTTGAGAAAAAAAA
CAAGTGCTGTGCATGTACGACCACCGCATACAACGTGGAGAGAACGAAGC
CAACAGCCGACGGGGCTGGGATCATGATCCGCCTTCAAGCGCTTCAATAC
TAGCTGACAACGACGCCAAATATCCACGTATGTATCCAACGAGAAATCGA
GATACATACCCGTGTAGCGCGCCCATACACTAGTTTACTAGTTGTTCCAT
TCCGGCACTAAACCGTCATCGCGCAATCCGCACCTGCCTGCAGATCGTGG
GAGACAAGTTTCTCCGAGAGTTGGGCGGTTTTCCCGAAGAAGGCTGGCAG
CGAAGAGGAGAGAAGTGCGTCGCGGAGTTCTGGGGCAAGAACAGGCGAGA
GGGTGTATTTTTTAGTGTAATATAATCCTTGACAACCGCCAAGTGTTTTC
TCCCTGCAAGCTAGCGTAATACGAGTGTTGCAGACGCGCGCATGCAGCGA
TAAGGCTATCCTTAACCCAAGGTATAAAAGGTTCGCGAGCGAGTACCGAG
GGTGACACGAGATACCACACTACCAGGACCGAGTTTCTAGGCTCGATTAC
TCCACGACCAAGAGGATGCACGAATGAAACGATACGTTATCGGAAAGCCT
CTCGATGAGAGGGCTTCAACGGCACCGTTGTCGGCGCTGCCACTCTTTCT
GCTGTGGAGAAATCGAGCTTGGAAAATCGGTCCAGGGGATGTGATATCTG
CTGTCACCTACGGTATTATAGTACCGAGCAAGCCTGCAAGACGAGTCGAC
TCATGCCCTTGAGTCCTCTTTGGTAAAGCGTCTGTCTTTGGGCCACACGT
GGTGGGTATGTGGTCCGGAGAGTTACATGTGCCCTCAGCGGATCCCCCAG
GCGCGGCCTACCCAGGTTGTAGTGGGAAGGCCGAGCCACCAACCCCGCTT
TGAGATATGTAAAAAGTATTTAGCGTTGAGGAGTCAACAGAGGCCCTTCA
GATGGGACAGTAAGGGGTTACCATGATCATCTCGAGCTCCTTGGTTCCGC
GTGGGGGGCATGGCCAGGTCGCTTGCACCGTACCGGATCCAAGAAAACGT
CTTGTCTCTGTACGTCTGTTGTGCAGACACCTGCCTAAGAATTTGGTGAT
ACCTTTTCAGAAATTGACGGTTCAGTTCTCACGAAATACGAAGTATAAGA
ACATGAACCCTACCCACACTAAGACCTATACATTCCCGGTTGTTTGGTTT
CCCCAGTGATCAAACAAGGAACGAGGGTTGCTCAATGTTATTGTAGAGTT
TCTTAGGTGGTGGCACGTCCGGTGCTGCTGTCAACTGAAGTTTCTCTTTG
AGACGTTCACGCCCGAAGACTGGTCTTTTTTGGAAAGTAGTGGCAGGCTC
CATGGACGCACAGCTCGTTTTATTTTTCTTGAACGTTTTTTTTGGAAGGG
CGAGTGGGATGGCTTTCGTAATTTCCTGGATTATTCTTTCTTGGGACCTG
AAAGTACACATGGCGTTACTGTCGGTGAAATACACCAAAACGGATATCAG
TTGATTCGTGATGGAATCGCACGCGTCATGTTGTATGATCTACCTACTGA
TCCTTCGCGATTGTTTCCCGTCGTCTCTTTGCCTCCCTTTCCGCGTAAAA
CCAGGGCCAAGGAACTCGAGAGGTTCCGCACCGACCCCGAGTGCTTCGTG
TTGCTGCTGGGCAAAAGGGGGGCCCACGGCCTTGACCTCAGCTTCGTGAC
GCACATGTTCTTGATGGACCAGATCTGGGACCGTTCTTTGGAAACACAGG
TGAGGAGGAGTAGGGGGACCCAAAGACAGTACAGTCGGTTACGGGTGGGT
GTGCAGGTGTCGGGAGATCGCACGCCCTTTGTCTTCTTTTTTGCCATCCC
ATCTTTGCACCCCCTTCATGTGTTTCTAATGTCATATAATTTGTTCTGGA
CGTCGGTCTTCGCACCGTTCGGTACAATTTTTCAAGATAGACGAGTATTG
AATGCATGTTTAGTTGTTCCCCGTCGTGTGTGCGTCGGCCGGATAAAGTA
ACATCGGCGTTTGACGGCTTCTCCGCCATCGCCCTTGTCCCCGTTGCTGC
CCACCACATCCGTATACCAAGGTTGTTGCTCGTGCTAACCGCATGGGCGC
TAAGGGCTCGGTCTCTGTGGTGCAGCTCATCATGAAGGACACGATGGAAC
AAGAGCTCCGTTCCTACGTCAACAGCGACAAGACTCGGAACGCCGCCCCC
ACCTCTACCCCGGGGCCTCGCTGGGGTTCGCTTTCTCCGTCTAACGGTAG
CCCCAACGGTCATACCGCTCATCCTTCTTCCCCTCTGCGTGGGGCGGGTG
CCGCGGGCGGCGTTGATGACCGTTTTCCAGCCATTGGGGGGGTGGGCGGA
TCAACCCCGACCCCCCCGAGAAAAAAGCCTCGAGAGAAGAGCCCGTGGGA
GGGGAGGGGGAGGAAACGTCCCCGGTCCGGCGGCGGCGGCAAGAGGGTTG
CCGGCGGCGGCGGGTTGTCGGCGTCATCACGTCAAGAGCACGCCAAGGTG
CACTTCCTGTTGACAAGCTTGAGGTCGTCGAAGGCGGCCGCTACTCAGGG
GGATGACGGCGGTGGGAAGGACAAGGAGAAGCAGAGGGGCGCCGAGGAGG
AAGAGGAAGAGGAGGACGGCGAGGGAAACGCGGGTGCGTTGTCGTCGGCA
CGCCAAGGGGACGGTAAGGGGAAAGGCAAGGGCAAGGGCAAGGGCAAGGG
CAAAAAGGCCGTCAGGAGAGGGGTAACTTTCGCCGAAGACGTCGTGGTTG
TCCAAGACAACGCTGCTGCTGCTGCCGTCGAGGACCCGCTGTGGGGGGGG
GAGGCGGCGGCAGGAGGCGGAGGAGCGAGCACCGCAAGCACCGACCGCAT
CGTCGGCTGGTCGCCCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1150:24766..28284-

>mRNA_E-siliculosus-1a_F_contig1150.987.1 ID=mRNA_E-siliculosus-1a_F_contig1150.987.1|Name=mRNA_E-siliculosus-1a_F_contig1150.987.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2370bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1150:24766..28284- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACAGCAAGGCGTTCTACGCAATTGAGGAGCTGAAGGGTATTCGGGA
CAAGGCCAAGTCATCGAACAGGCGACGATGCACAGCAAGGCGTTCTACGC
AATTGAGGAGCTGAAGGGTATTCGGGACAAGGCCAAGTCATCGAACAGGC
GACGCAGGGGAGACTATCGTCCGTTGAAGGCGATCGTGTTCTCGCAGTTT
CTTCCAGTCCTCAACCAGGGGAGACTATCGTCCGTTGAAGGCGATCGTGT
TCTCGCAGTTTCTTCCAGTCCTCAACATCGTGGGAGACAAGTTTCTCCGA
GAGTTGGGCGGTTTTCCCGAAGAAGGCTGGCAGCGAAGAGGAGAGAAGTG
CGTCGCGGAGTTCTGGGGCAAGAACAGGCGAGAGGGTATCGTGGGAGACA
AGTTTCTCCGAGAGTTGGGCGGTTTTCCCGAAGAAGGCTGGCAGCGAAGA
GGAGAGAAGTGCGTCGCGGAGTTCTGGGGCAAGAACAGGCGAGAGGGTGA
ACTCGAGAGGTTCCGCACCGACCCCGAGTGCTTCGTGTTGCTGCTGGGCA
AAAGGGGGGCCCACGGCCTTGACCTCAGCTTCGTGACGCACATGTTCTTG
ATGGACCAGATCTGGGACCGTTCTTTGGAAACACAGGAACTCGAGAGGTT
CCGCACCGACCCCGAGTGCTTCGTGTTGCTGCTGGGCAAAAGGGGGGCCC
ACGGCCTTGACCTCAGCTTCGTGACGCACATGTTCTTGATGGACCAGATC
TGGGACCGTTCTTTGGAAACACAGGTTGTTGCTCGTGCTAACCGCATGGG
CGCTAAGGGCTCGGTCTCTGTGGTGCAGCTCATCATGAAGGACACGATGG
AACAAGAGCTCCGTTCCTACGTCAACAGCGACAAGACTCGGAACGCCGCC
CCCACCTCTACCCCGGGGCCTCGCTGGGGTTCGCTTTCTCCGTCTAACGG
TAGCCCCAACGGTCATACCGCTCATCCTTCTTCCCCTCTGCGTGGGGCGG
GTGCCGCGGGCGGCGTTGATGACCGTTTTCCAGCCATTGGGGGGGTGGGC
GGATCAACCCCGACCCCCCCGAGAAAAAAGCCTCGAGAGAAGAGCCCGTG
GGAGGGGAGGGGGAGGAAACGTCCCCGGTCCGGCGGCGGCGGCAAGAGGG
TTGCCGGCGGCGGCGGGTTGTCGGCGTCATCACGTCAAGAGCACGCCAAG
GTGCACTTCCTGTTGACAAGCTTGAGGTCGTCGAAGGCGGCCGCTACTCA
GGGGGATGACGGCGGTGGGAAGGACAAGGAGAAGCAGAGGGGCGCCGAGG
AGGAAGAGGAAGAGGAGGACGGCGAGGGAAACGCGGGTGCGTTGTCGTCG
GCACGCCAAGGGGACGGTAAGGGGAAAGGCAAGGGCAAGGGCAAGGGCAA
GGGCAAAAAGGCCGTCAGGAGAGGGGTAACTTTCGCCGAAGACGTCGTGG
TTGTCCAAGACAACGCTGCTGCTGCTGCCGTCGAGGACCCGCTGTGGGGG
GGGGAGGCGGCGGCAGGAGGCGGAGGAGCGAGCACCGCAAGCACCGACCG
CATCGTCGGCTGGTCGCCCTAAGTTGTTGCTCGTGCTAACCGCATGGGCG
CTAAGGGCTCGGTCTCTGTGGTGCAGCTCATCATGAAGGACACGATGGAA
CAAGAGCTCCGTTCCTACGTCAACAGCGACAAGACTCGGAACGCCGCCCC
CACCTCTACCCCGGGGCCTCGCTGGGGTTCGCTTTCTCCGTCTAACGGTA
GCCCCAACGGTCATACCGCTCATCCTTCTTCCCCTCTGCGTGGGGCGGGT
GCCGCGGGCGGCGTTGATGACCGTTTTCCAGCCATTGGGGGGGTGGGCGG
ATCAACCCCGACCCCCCCGAGAAAAAAGCCTCGAGAGAAGAGCCCGTGGG
AGGGGAGGGGGAGGAAACGTCCCCGGTCCGGCGGCGGCGGCAAGAGGGTT
GCCGGCGGCGGCGGGTTGTCGGCGTCATCACGTCAAGAGCACGCCAAGGT
GCACTTCCTGTTGACAAGCTTGAGGTCGTCGAAGGCGGCCGCTACTCAGG
GGGATGACGGCGGTGGGAAGGACAAGGAGAAGCAGAGGGGCGCCGAGGAG
GAAGAGGAAGAGGAGGACGGCGAGGGAAACGCGGGTGCGTTGTCGTCGGC
ACGCCAAGGGGACGGTAAGGGGAAAGGCAAGGGCAAGGGCAAGGGCAAGG
GCAAAAAGGCCGTCAGGAGAGGGGTAACTTTCGCCGAAGACGTCGTGGTT
GTCCAAGACAACGCTGCTGCTGCTGCCGTCGAGGACCCGCTGTGGGGGGG
GGAGGCGGCGGCAGGAGGCGGAGGAGCGAGCACCGCAAGCACCGACCGCA
TCGTCGGCTGGTCGCCCTAA
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